IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
372	 59.58	0	391975..392637	-	220	163842649	ccoO	BSUIS_A0393	-	cytochrome c oxidase, cbb3-type, subunit II
373	 57.87	0	392720..394345	-	541	163842650	ccoN	BSUIS_A0394	-	cytochrome c oxidase, cbb3-type, subunit I
374	 58.82	0	394563..395021	-	152	163842651	fur	BSUIS_A0395	-	ferric uptake regulation protein
375	 51.99	-1	395020..395346	+	108	163842652	-	BSUIS_A0396	-	hypothetical protein
376	 57.40	0	395463..396077	+	204	163842653	-	BSUIS_A0397	-	DSBA oxidoreductase
377	 60.79	0	396126..397571	-	481	163842654	-	BSUIS_A0398	-	succinate semialdehyde dehydrogenase
378	 59.48	0	397770..398855	+	361	163842655	-	BSUIS_A0399	-	methylated-DNA-[protein]-cysteine S-methyltransferase
379	 53.56	0	399037..399387	+	116	163842656	-	BSUIS_A0400	-	hypothetical protein
380	 60.06	0	399724..400767	+	347	163842657	-	BSUIS_A0401	-	hypothetical protein
381	 62.00	+1	400989..401996	+	335	163842658	-	BSUIS_A0402	-	hypothetical protein
382	 56.01	0	402218..403465	+	415	163842659	-	BSUIS_A0403	-	transport protein
383	 60.06	0	403504..404502	-	332	163842660	-	BSUIS_A0404	-	polysaccharide deacetylase
384	 62.20	+1	404748..405419	+	223	163842661	-	BSUIS_A0405	-	hypothetical protein
385	 61.78	+1	405441..406892	+	483	163842662	-	BSUIS_A0406	-	GTP-binding protein EngA
386	 56.87	0	407051..408367	+	438	163842663	dnaK	BSUIS_A0407	-	chaperone protein dnaK
387	 60.44	0	408804..410087	+	427	163842664	-	BSUIS_A0408	-	cell wall hydrolase SleB
388	 56.14	0	410364..410762	+	132	163842665	-	BSUIS_A0409	-	hypothetical protein
389	 55.87	0	410870..411619	+	249	163842666	atpB	BSUIS_A0410	-	F0F1 ATP synthase subunit A
390	 61.84	+1	411687..411914	+	75	163842667	atpE	BSUIS_A0411	-	F0F1 ATP synthase subunit C
391	 63.00	+1	412086..412712	+	208	163842668	-	BSUIS_A0412	-	F0F1 ATP synthase subunit B'
392	 56.25	0	412723..413202	+	159	163842669	atpF	BSUIS_A0413	-	F0F1 ATP synthase subunit B
393	 62.29	+1	413325..413987	-	220	163842670	rnhB	BSUIS_A0414	-	ribonuclease HII
394	 61.04	0	414164..415336	-	390	163842671	-	BSUIS_A0415	-	radical SAM domain-containing protein
395	 62.13	+1	415472..415978	+	168	163842672	-	BSUIS_A0416	-	hypothetical protein
396	 56.18	0	416058..416324	-	88	163842673	-	BSUIS_A0417	-	hypothetical protein
397	 33.33	-2	416396..416608	-	70	163842674	-	BSUIS_A0418	-	hypothetical protein
398	 48.98	-1	416592..416738	-	48	163842675	-	BSUIS_A0419	-	hypothetical protein
399	 60.22	0	416683..417582	-	299	163842676	ispE	BSUIS_A0420	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
400	 61.26	0	417611..417832	-	73	163842677	-	BSUIS_A0421	-	hypothetical protein
401	 59.98	0	418262..419368	-	368	163842678	-	BSUIS_A0422	-	peptidase S49
402	 59.48	0	419289..420470	-	393	163842679	nhaA	BSUIS_A0423	-	Na+/H+ antiporter NhaA
403	 46.85	-2	420490..420711	-	73	163842680	-	BSUIS_A0424	-	hypothetical protein
404	 65.39	+1	420760..421542	-	260	163842681	-	BSUIS_A0425	-	methyltransferase small
405	 53.07	0	421539..421766	-	75	163842682	-	BSUIS_A0426	-	hypothetical protein
406	 61.78	+1	422029..423051	+	340	163842683	-	BSUIS_A0427	-	hypothetical protein
407	 59.06	0	423355..425220	+	621	163842684	-	BSUIS_A0428	-	TPR repeat-containing protein
408	 57.07	0	425372..426298	+	308	163842685	glyQ	BSUIS_A0429	-	glycyl-tRNA synthetase subunit alpha
409	 59.94	0	426417..428750	+	777	163842686	glyS	BSUIS_A0430	-	glycyl-tRNA synthetase subunit beta
410	 64.92	+1	428889..429860	+	323	163842687	-	BSUIS_A0431	-	Sua5/YciO/YrdC/YwlC family protein
411	 59.02	0	429886..431298	+	470	163842688	-	BSUIS_A0432	-	hypothetical protein
412	 52.52	-1	431336..431653	-	105	163842689	-	BSUIS_A0433	-	plasmid stabilization system protein
413	 54.41	0	431650..431910	-	86	163842690	-	BSUIS_A0434	-	CopG-like DNA-binding
414	 46.01	-2	432019..432231	-	70	163842691	-	BSUIS_A0435	-	hypothetical protein
415	 63.41	+1	432221..432742	+	173	163842692	-	BSUIS_A0436	-	hypothetical protein
416	 60.56	0	432917..433669	-	250	163842693	-	BSUIS_A0437	-	enoyl-CoA hydratase
417	 61.05	0	433672..435450	-	592	163842694	-	BSUIS_A0438	-	acyl-CoA dehydrogenase domain-containing protein
418	 57.77	0	435768..436913	+	381	163842695	-	BSUIS_A0439	-	diguanylate cyclase
419	 61.14	0	436931..438214	-	427	163842696	purD	BSUIS_A0440	-	phosphoribosylamine--glycine ligase
420	 61.48	+1	438359..439360	+	333	163842697	ubiA	BSUIS_A0441	-	prenyltransferase
421	 60.13	0	439400..440011	-	203	163842698	pdxH	BSUIS_A0442	-	pyridoxamine 5'-phosphate oxidase
422	 56.26	0	440285..440755	+	156	163842699	-	BSUIS_A0443	-	hypothetical protein
423	 60.19	0	440900..441841	+	313	163842700	dnaJ	BSUIS_A0444	-	chaperone protein dnaJ
424	 56.78	0	441985..442803	+	272	163842701	fabI	BSUIS_A0445	-	enoyl-(acyl carrier protein) reductase
425	 43.03	-2	443633..443797	-	54	163842702	-	BSUIS_A0448	-	hypothetical protein
426	 53.33	0	443760..443969	+	69	163842703	-	BSUIS_A0449	-	ATP/GTP-binding motif-containing protein
427	 49.33	-1	444067..444216	-	49	163842704	-	BSUIS_A0450	-	hypothetical protein
428	 55.87	0	444439..444651	+	70	163842705	-	BSUIS_A0451	-	hypothetical protein
429	 60.21	0	444728..445408	+	226	163842706	-	BSUIS_A0452	-	hypothetical protein
430	 50.00	-1	445553..445804	-	83	163842707	-	BSUIS_A0453	-	hypothetical protein
431	 61.00	0	446080..447174	+	364	163842708	aroC	BSUIS_A0454	-	chorismate synthase
432	 60.30	0	447310..448425	+	371	163842709	ribB	BSUIS_A0455	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
433	 58.15	0	448641..449591	+	316	163842710	-	BSUIS_A0456	-	histone deacetylase superfamily protein
434	 56.86	0	449596..449850	+	84	163842711	xseB	BSUIS_A0457	-	exodeoxyribonuclease VII small subunit
435	 57.61	0	449857..450375	-	172	163842712	-	BSUIS_A0458	-	SNARE associated Golgi protein
436	 53.26	0	450617..450877	-	86	163842713	ymgE	BSUIS_A0459	-	transglycosylase-associated protein
437	 64.13	+1	451040..451591	+	183	163842714	-	BSUIS_A0460	-	hypothetical protein
438	 61.17	0	451796..452668	+	290	163842715	-	BSUIS_A0461	-	pirin domain-containing protein
439	 62.11	+1	452811..454742	+	643	163842716	dxs	BSUIS_A0462	-	1-deoxy-D-xylulose-5-phosphate synthase
440	 61.92	+1	454793..455509	+	238	163842717	-	BSUIS_A0463	-	hemolysin A
441	 63.70	+1	455506..456753	+	415	163842718	rumA	BSUIS_A0464	-	23S rRNA (uracil-5-)-methyltransferase rumA
442	 58.21	0	456913..457515	-	200	163842719	-	BSUIS_A0465	-	hypothetical protein
443	 51.64	-1	457645..458010	+	121	163842720	-	BSUIS_A0466	-	hypothetical protein
444	 61.73	+1	458197..459411	+	404	163842721	-	BSUIS_A0467	-	peptidoglycan-binding LysM
445	 58.29	0	459614..461500	+	628	163842722	-	BSUIS_A0468	-	heavy metal tolerance protein precursor
446	 59.80	0	461605..462303	+	232	163842723	-	BSUIS_A0469	-	phosphatidylserine decarboxylase
447	 59.38	0	462308..463144	+	278	163842724	pssA	BSUIS_A0470	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
448	 61.00	0	463229..463969	-	246	163842725	-	BSUIS_A0471	-	short-chain dehydrogenase/reductase SDR
449	 59.12	0	464038..465495	-	485	163842726	purF	BSUIS_A0472	-	amidophosphoribosyltransferase
450	 48.99	-1	465517..465714	+	65	163842727	-	BSUIS_A0473	-	hypothetical protein
451	 58.20	0	465810..466388	-	192	163842728	-	BSUIS_A0474	-	colicin V production protein
452	 62.25	+1	466514..467917	-	467	163842729	radA	BSUIS_A0475	-	DNA repair protein RadA
453	 58.70	0	467945..469450	-	501	163842730	dnaB	BSUIS_A0476	-	replicative DNA helicase
454	 55.89	0	469649..470929	-	426	163842731	-	BSUIS_A0477	-	hypothetical protein
455	 58.42	0	471303..471872	-	189	163842732	rplI	BSUIS_A0478	-	50S ribosomal protein L9
456	 61.93	+1	471902..472873	-	323	163842733	-	BSUIS_A0479	-	hypothetical protein
457	 58.23	0	473024..473272	-	82	163842734	rpsR	BSUIS_A0480	-	30S ribosomal protein S18
458	 61.30	+1	473275..473721	-	148	163842735	rpsF	BSUIS_A0481	-	30S ribosomal protein S6
459	 54.72	0	473746..474105	-	119	163842736	-	BSUIS_A0482	-	hypothetical protein
460	 61.69	+1	474127..475071	+	314	163842737	fabD	BSUIS_A0483	-	malonyl CoA-acyl carrier protein transacylase
461	 59.08	0	475141..475878	+	245	163842738	nodG	BSUIS_A0484	-	3-ketoacyl-(acyl-carrier-protein) reductase NodG
462	 53.16	0	476152..476388	+	78	163842739	acpP	BSUIS_A0485	-	acyl carrier protein
463	 57.58	0	476392..476655	+	87	163842740	-	BSUIS_A0486	-	hypothetical protein
464	 62.00	+1	476712..477974	+	420	163842741	-	BSUIS_A0487	-	3-oxoacyl-(acyl carrier protein) synthase II
465	 58.92	0	478199..479437	+	412	163842742	-	BSUIS_A0488	-	hypothetical protein
466	 61.33	+1	479622..480521	+	299	163842743	-	BSUIS_A0489	-	hypothetical protein
467	 57.62	0	480530..481192	+	220	163842744	gmk	BSUIS_A0490	-	guanylate kinase
468	 61.00	0	481219..482631	-	470	163842745	-	BSUIS_A0491	-	peptidase U62 modulator of DNA gyrase
469	 63.80	+1	482773..483399	-	208	163842746	-	BSUIS_A0492	-	invasion associated locus B family protein
470	 62.37	+1	483597..483689	-	30	163842747	-	BSUIS_A0493	-	hypothetical protein
471	 58.71	0	483833..484687	+	284	163842748	coxB	BSUIS_A0494	-	cytochrome c oxidase, subunit II
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.