IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
230	 59.10	0	251595..252440	+	281	163842507	-	BSUIS_A0244	-	fumarylacetoacetate hydrolase domain-containing protein
231	 58.53	0	252454..253731	+	425	163842508	-	BSUIS_A0245	-	mandelate racemase/muconate lactonizing protein
232	 47.83	-2	254130..254681	-	183	163842509	-	BSUIS_A0246	-	hypothetical protein
233	 46.38	-2	255510..255647	-	45	163842510	-	BSUIS_A0247	-	hypothetical protein
234	 55.78	0	255884..256627	+	247	163842511	-	BSUIS_A0248	-	integrase DNA protein
235	 55.71	0	257589..257807	+	72	163842512	-	BSUIS_A0249	-	hypothetical protein
236	 52.70	-1	258014..258328	+	104	163842513	-	BSUIS_A0250	-	hypothetical protein
237	 59.75	0	258325..259206	+	293	163842514	-	BSUIS_A0251	-	virulence-associated protein E
238	 55.16	0	259203..260732	+	509	163842515	-	BSUIS_A0252	-	hypothetical protein
239	 50.16	-1	260702..261319	+	205	163842516	-	BSUIS_A0253	-	hypothetical protein
240	 53.69	0	261473..262489	+	338	163842517	-	BSUIS_A0254	-	hypothetical protein
241	 49.52	-1	262591..262800	+	69	163842518	-	BSUIS_A0255	-	hypothetical protein
242	 55.90	0	262791..264917	+	708	163842519	flgJ	BSUIS_A0256	-	peptidoglycan hydrolase flgJ
243	 56.89	0	264914..266959	+	681	163842520	-	BSUIS_A0257	-	elastin precursor
244	 52.61	-1	267160..267465	+	101	163842521	-	BSUIS_A0258	-	hypothetical protein
245	 55.56	0	268564..268770	+	68	163842522	-	BSUIS_A0259	-	hypothetical protein
246	 48.82	-1	270034..270582	+	182	163842523	-	BSUIS_A0260	-	hypothetical protein
247	 40.53	-2	270967..271452	-	161	163842524	-	BSUIS_A0261	-	hypothetical protein
248	 53.66	0	271990..272235	-	81	163842525	-	BSUIS_A0262	-	helix-turn-helix domain-containing protein
249	 54.07	0	272313..272558	+	81	163842526	-	BSUIS_A0263	-	hypothetical protein
250	 51.89	-1	272624..272914	+	96	163842527	-	BSUIS_A0264	-	hypothetical protein
251	 56.81	0	272911..273549	+	212	163842528	-	BSUIS_A0265	-	hypothetical protein
252	 56.32	0	273551..273724	+	57	163842529	-	BSUIS_A0266	-	hypothetical protein
253	 52.64	-1	273721..274725	+	334	163842530	-	BSUIS_A0267	-	hypothetical protein
254	 46.86	-2	275030..275857	-	275	163842531	-	BSUIS_A0268	-	hypothetical protein
255	 59.72	0	276836..277051	-	71	163842532	-	BSUIS_A0270	-	zinc-binding protein
256	 61.24	0	277061..277687	-	208	163842533	maf	BSUIS_A0271	-	Maf-like protein
257	 52.05	-1	277721..277939	-	72	163842534	infA	BSUIS_A0272	-	translation initiation factor IF-1
258	 58.65	0	278051..278524	-	157	163842535	-	BSUIS_A0273	-	protein tyrosine phosphatase
259	 58.80	0	278531..279013	-	160	163842536	-	BSUIS_A0274	-	hypothetical protein
260	 61.87	+1	279020..280312	-	430	163842537	hisD	BSUIS_A0275	-	histidinol dehydrogenase
261	 55.33	0	280387..280827	-	146	163842538	-	BSUIS_A0276	-	hypothetical protein
262	 61.01	0	281098..282387	-	429	163842539	murA	BSUIS_A0277	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
263	 53.56	0	282553..282903	+	116	163842540	-	BSUIS_A0278	-	hypothetical protein
264	 59.44	0	282610..282789	-	59	163842541	-	BSUIS_A0279	-	hypothetical protein
265	 55.69	0	283079..284845	+	588	163842542	-	BSUIS_A0281	-	hypothetical protein
266	 56.26	0	284940..285362	+	140	163842543	-	BSUIS_A0282	-	hypothetical protein
267	 56.41	0	285375..285569	+	64	163842544	-	BSUIS_A0283	-	hypothetical protein
268	 54.62	0	286012..286758	+	248	163842545	tnpR	BSUIS_A0284	-	transposon Tn2501 resolvase
269	 54.80	0	287133..288497	+	454	163842546	-	BSUIS_A0285	-	hypothetical protein
270	 56.49	0	289810..290094	-	94	163842547	-	BSUIS_A0286	-	hypothetical protein
271	 55.94	0	290208..290468	-	86	163842548	-	BSUIS_A0287	-	hypothetical protein
272	 52.56	-1	290552..290941	+	129	163842549	-	BSUIS_A0288	-	hypothetical protein
273	 62.81	+1	291574..292377	+	267	163842550	ureD	BSUIS_A0289	-	urease accessory protein ureD
274	 60.40	0	292530..292832	+	100	163842551	ureA	BSUIS_A0290	-	urease subunit gamma
275	 58.33	0	292891..292986	+	31	163842552	-	BSUIS_A0291	-	hypothetical protein
276	 57.84	0	292999..293304	+	101	163842553	ureB	BSUIS_A0292	-	urease subunit beta
277	 60.36	0	293323..295035	+	570	163842554	ureC	BSUIS_A0293	-	urease subunit alpha
278	 59.10	0	295051..295539	+	162	163842555	ureE	BSUIS_A0294	-	urease accessory protein UreE
279	 63.17	+1	295511..296197	+	228	163842556	ureF	BSUIS_A0295	-	urease accessory protein ureF
280	 57.26	0	296194..296820	+	208	163842557	ureG	BSUIS_A0296	-	urease accessory protein UreG
281	 57.93	0	296995..298803	-	602	163842558	luxN	BSUIS_A0298	-	autoinducer 1 sensor kinase/phosphatase luxN
282	 54.25	0	298820..299125	-	101	163842559	-	BSUIS_A0299	-	hypothetical protein
283	 60.68	0	299088..300239	+	383	163842560	-	BSUIS_A0300	-	RND family efflux transporter MFP subunit
284	 60.31	0	300254..303385	+	1043	163842561	-	BSUIS_A0301	-	acriflavin resistance protein
285	 60.00	0	303508..304977	-	489	163842562	hydA	BSUIS_A0302	-	dihydropyrimidinase
286	 59.94	0	305029..306276	-	415	163842563	-	BSUIS_A0303	-	allantoate amidohydrolase
287	 55.12	0	306495..307178	+	227	163842564	-	BSUIS_A0304	-	TetR family transcriptional regulator
288	 61.28	+1	307175..307564	+	129	163842565	-	BSUIS_A0305	-	NUDIX hydrolase
289	 60.79	0	307609..308919	-	436	163842566	-	BSUIS_A0306	-	dihydropyrimidine dehydrogenase
290	 60.92	0	308923..310419	-	498	163842567	-	BSUIS_A0307	-	putative oxidoreductase
291	 54.62	0	310296..310544	+	82	163842568	-	BSUIS_A0308	-	hypothetical protein
292	 56.29	0	310607..311059	-	150	163842569	-	BSUIS_A0309	-	carbon monoxide dehydrogenase subunit G
293	 60.61	0	311210..312859	+	549	163842570	pgi	BSUIS_A0310	-	glucose-6-phosphate isomerase
294	 58.57	0	313095..314156	+	353	163842571	-	BSUIS_A0311	-	succinylglutamate desuccinylase/aspartoacylase
295	 60.27	0	314153..314902	+	249	163842572	-	BSUIS_A0312	-	HAD family hydrolase
296	 59.22	0	314875..315747	-	290	163842573	-	BSUIS_A0313	-	hypothetical protein
297	 59.22	0	315773..317518	-	581	163842574	-	BSUIS_A0314	-	acyl-CoA synthetase
298	 56.35	0	317869..318498	-	209	163842575	ttgR	BSUIS_A0315	-	HTH-type transcriptional regulator ttgR
299	 60.11	0	318629..318811	-	60	163842576	-	BSUIS_A0316	-	hypothetical protein
300	 59.88	0	318671..319864	+	397	163842577	-	BSUIS_A0317	-	RND family efflux transporter MFP subunit
301	 60.08	0	319861..323019	+	1052	163842578	-	BSUIS_A0318	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
302	 52.98	0	323130..323297	-	55	163842579	-	BSUIS_A0319	-	hypothetical protein
303	 48.23	-2	323518..323658	-	46	163842580	-	BSUIS_A0320	-	hypothetical protein
304	 58.13	0	323727..324569	-	280	163842581	-	BSUIS_A0321	-	extracellular solute-binding protein
305	 58.32	0	324835..326727	+	630	163842582	bcsA	BSUIS_A0322	-	cellulose synthase catalytic subunit (UDP-forming)
306	 60.97	0	327748..329064	+	438	163842583	phoR	BSUIS_A0324	-	phosphate regulon sensor protein phoR
307	 61.33	+1	329194..329736	-	180	163842584	-	BSUIS_A0325	-	GcrA cell cycle regulator
308	 55.26	0	329908..330249	-	113	163842585	-	BSUIS_A0326	-	hypothetical protein
309	 59.82	0	330339..331550	+	403	163842586	argD	BSUIS_A0327	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
310	 57.83	0	331555..332493	+	312	163842587	argF	BSUIS_A0328	-	ornithine carbamoyltransferase
311	 58.46	0	332495..333517	+	340	163842588	hslO	BSUIS_A0329	-	Hsp33-like chaperonin
312	 56.74	0	333558..333950	-	130	163842589	apaG	BSUIS_A0330	-	ApaG
313	 59.48	0	334319..335515	-	398	163842590	metZ	BSUIS_A0331	-	O-succinylhomoserine sulfhydrylase
314	 54.17	0	335505..335600	-	31	163842591	-	BSUIS_A0332	-	hypothetical protein
315	 61.17	0	335942..337033	+	363	163842592	-	BSUIS_A0334	-	2'-deoxycytidine 5'-triphosphate deaminase
316	 60.08	0	337124..338140	+	338	163842593	-	BSUIS_A0335	-	AraC family transcriptional regulator
317	 53.56	0	338227..338493	+	88	163842594	-	BSUIS_A0336	-	hypothetical protein
318	 59.83	0	338530..339012	+	160	163842595	-	BSUIS_A0337	-	SCP-like extracellular
319	 59.94	0	339187..340554	+	455	163842596	-	BSUIS_A0338	-	MATE efflux family protein
320	 60.37	0	340556..341650	-	364	163842597	pyrD	BSUIS_A0339	-	dihydroorotate dehydrogenase 2
321	 58.47	0	341647..342000	-	117	163842598	-	BSUIS_A0340	-	hypothetical protein
322	 54.89	0	342101..342601	-	166	163842599	-	BSUIS_A0341	-	hypothetical protein
323	 58.77	0	342254..342709	+	151	163842600	-	BSUIS_A0342	-	hypothetical protein
324	 58.99	0	342800..343750	-	316	163842601	pip	BSUIS_A0343	-	proline iminopeptidase
325	 58.57	0	343980..344621	+	213	163842602	-	BSUIS_A0344	-	two component LuxR family transcriptional regulator
326	 60.74	0	344658..348182	-	1174	163842603	-	BSUIS_A0345	-	integral membrane sensor hybrid histidine kinase
327	 52.38	-1	348467..348613	-	48	163842604	-	BSUIS_A0346	-	hypothetical protein
328	 52.76	0	348695..349111	+	138	163842605	mscL	BSUIS_A0347	-	large conductance mechanosensitive channel protein
329	 58.69	0	349187..350464	-	425	163842606	hemA	BSUIS_A0348	-	5-aminolevulinate synthase
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.