IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
205	 63.28	+1	222760..223764	-	334	163842482	thiO	BSUIS_A0216	-	glycine oxidase ThiO
206	 62.79	+1	223764..224639	-	291	163842483	thiD	BSUIS_A0217	-	phosphomethylpyrimidine kinase
207	 57.91	0	225068..227179	+	703	163842484	-	BSUIS_A0219	-	diguanylate cyclase
208	 62.15	+1	227278..229758	+	826	163842485	-	BSUIS_A0220	-	heavy metal translocating P-type ATPase
209	 58.67	0	229738..230187	-	149	163842486	cueR	BSUIS_A0221	-	Cu(I)-responsive transcriptional regulator
210	 61.18	0	230293..231039	-	248	163842487	-	BSUIS_A0222	-	binding-protein-dependent transport systems inner membrane component
211	 63.58	+1	231036..231974	-	312	163842488	-	BSUIS_A0223	-	ABC transporter related
212	 62.36	+1	231971..233131	-	386	163842489	-	BSUIS_A0224	-	binding-protein-dependent transport systems inner membrane component
213	 55.90	0	233204..234271	-	355	163842490	-	BSUIS_A0225	-	substrate-binding region of ABC-type glycine betaine transport system
214	 45.80	-2	234304..234969	-	221	163842491	-	BSUIS_A0226	-	hypothetical protein
215	 60.51	0	235259..236524	-	421	163842492	gdhA	BSUIS_A0227	-	glutamate dehydrogenase
216	 51.79	-1	236715..236882	+	55	163842493	-	BSUIS_A0228	-	hypothetical protein
217	 59.89	0	236851..238104	+	417	163842494	-	BSUIS_A0229	-	sarcosine oxidase beta subunit family protein
218	 58.82	0	238123..238428	+	101	163842495	-	BSUIS_A0230	-	sarcosine oxidase delta subunit family protein
219	 57.66	0	241437..241991	+	184	163842496	-	BSUIS_A0232	-	sarcosine oxidase gamma subunit
220	 60.38	0	242949..243743	-	264	163842497	-	BSUIS_A0234	-	regulatory protein IclR
221	 57.73	0	243901..245220	+	439	163842498	-	BSUIS_A0235	-	extracellular solute-binding protein
222	 58.77	0	245281..246204	+	307	163842499	-	BSUIS_A0236	-	binding-protein-dependent transport systems inner membrane component
223	 59.59	0	246207..247082	+	291	163842500	-	BSUIS_A0237	-	binding-protein-dependent transport systems inner membrane component
224	 60.35	0	247090..248181	+	363	163842501	lacK	BSUIS_A0238	-	lactose transport ATP-binding protein lacK
225	 59.70	0	248184..249302	+	372	163842502	mdlA	BSUIS_A0239	-	mandelate racemase
226	 51.01	-1	249299..249643	+	114	163842503	-	BSUIS_A0240	-	hypothetical protein
227	 60.56	0	249636..250715	+	359	163842504	-	BSUIS_A0241	-	oxidoreductase domain-containing protein
228	 52.38	-1	250712..250816	+	34	163842505	-	BSUIS_A0242	-	hypothetical protein
229	 61.50	+1	250820..251554	+	244	163842506	polS	BSUIS_A0243	-	sorbitol dehydrogenase
230	 59.10	0	251595..252440	+	281	163842507	-	BSUIS_A0244	-	fumarylacetoacetate hydrolase domain-containing protein
231	 58.53	0	252454..253731	+	425	163842508	-	BSUIS_A0245	-	mandelate racemase/muconate lactonizing protein
232	 47.83	-2	254130..254681	-	183	163842509	-	BSUIS_A0246	-	hypothetical protein
233	 46.38	-2	255510..255647	-	45	163842510	-	BSUIS_A0247	-	hypothetical protein
234	 55.78	0	255884..256627	+	247	163842511	-	BSUIS_A0248	-	integrase DNA protein
235	 55.71	0	257589..257807	+	72	163842512	-	BSUIS_A0249	-	hypothetical protein
236	 52.70	-1	258014..258328	+	104	163842513	-	BSUIS_A0250	-	hypothetical protein
237	 59.75	0	258325..259206	+	293	163842514	-	BSUIS_A0251	-	virulence-associated protein E
238	 55.16	0	259203..260732	+	509	163842515	-	BSUIS_A0252	-	hypothetical protein
239	 50.16	-1	260702..261319	+	205	163842516	-	BSUIS_A0253	-	hypothetical protein
240	 53.69	0	261473..262489	+	338	163842517	-	BSUIS_A0254	-	hypothetical protein
241	 49.52	-1	262591..262800	+	69	163842518	-	BSUIS_A0255	-	hypothetical protein
242	 55.90	0	262791..264917	+	708	163842519	flgJ	BSUIS_A0256	-	peptidoglycan hydrolase flgJ
243	 56.89	0	264914..266959	+	681	163842520	-	BSUIS_A0257	-	elastin precursor
244	 52.61	-1	267160..267465	+	101	163842521	-	BSUIS_A0258	-	hypothetical protein
245	 55.56	0	268564..268770	+	68	163842522	-	BSUIS_A0259	-	hypothetical protein
246	 48.82	-1	270034..270582	+	182	163842523	-	BSUIS_A0260	-	hypothetical protein
247	 40.53	-2	270967..271452	-	161	163842524	-	BSUIS_A0261	-	hypothetical protein
248	 53.66	0	271990..272235	-	81	163842525	-	BSUIS_A0262	-	helix-turn-helix domain-containing protein
249	 54.07	0	272313..272558	+	81	163842526	-	BSUIS_A0263	-	hypothetical protein
250	 51.89	-1	272624..272914	+	96	163842527	-	BSUIS_A0264	-	hypothetical protein
251	 56.81	0	272911..273549	+	212	163842528	-	BSUIS_A0265	-	hypothetical protein
252	 56.32	0	273551..273724	+	57	163842529	-	BSUIS_A0266	-	hypothetical protein
253	 52.64	-1	273721..274725	+	334	163842530	-	BSUIS_A0267	-	hypothetical protein
254	 46.86	-2	275030..275857	-	275	163842531	-	BSUIS_A0268	-	hypothetical protein
255	 59.72	0	276836..277051	-	71	163842532	-	BSUIS_A0270	-	zinc-binding protein
256	 61.24	0	277061..277687	-	208	163842533	maf	BSUIS_A0271	-	Maf-like protein
257	 52.05	-1	277721..277939	-	72	163842534	infA	BSUIS_A0272	-	translation initiation factor IF-1
258	 58.65	0	278051..278524	-	157	163842535	-	BSUIS_A0273	-	protein tyrosine phosphatase
259	 58.80	0	278531..279013	-	160	163842536	-	BSUIS_A0274	-	hypothetical protein
260	 61.87	+1	279020..280312	-	430	163842537	hisD	BSUIS_A0275	-	histidinol dehydrogenase
261	 55.33	0	280387..280827	-	146	163842538	-	BSUIS_A0276	-	hypothetical protein
262	 61.01	0	281098..282387	-	429	163842539	murA	BSUIS_A0277	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
263	 53.56	0	282553..282903	+	116	163842540	-	BSUIS_A0278	-	hypothetical protein
264	 59.44	0	282610..282789	-	59	163842541	-	BSUIS_A0279	-	hypothetical protein
265	 55.69	0	283079..284845	+	588	163842542	-	BSUIS_A0281	-	hypothetical protein
266	 56.26	0	284940..285362	+	140	163842543	-	BSUIS_A0282	-	hypothetical protein
267	 56.41	0	285375..285569	+	64	163842544	-	BSUIS_A0283	-	hypothetical protein
268	 54.62	0	286012..286758	+	248	163842545	tnpR	BSUIS_A0284	-	transposon Tn2501 resolvase
269	 54.80	0	287133..288497	+	454	163842546	-	BSUIS_A0285	-	hypothetical protein
270	 56.49	0	289810..290094	-	94	163842547	-	BSUIS_A0286	-	hypothetical protein
271	 55.94	0	290208..290468	-	86	163842548	-	BSUIS_A0287	-	hypothetical protein
272	 52.56	-1	290552..290941	+	129	163842549	-	BSUIS_A0288	-	hypothetical protein
273	 62.81	+1	291574..292377	+	267	163842550	ureD	BSUIS_A0289	-	urease accessory protein ureD
274	 60.40	0	292530..292832	+	100	163842551	ureA	BSUIS_A0290	-	urease subunit gamma
275	 58.33	0	292891..292986	+	31	163842552	-	BSUIS_A0291	-	hypothetical protein
276	 57.84	0	292999..293304	+	101	163842553	ureB	BSUIS_A0292	-	urease subunit beta
277	 60.36	0	293323..295035	+	570	163842554	ureC	BSUIS_A0293	-	urease subunit alpha
278	 59.10	0	295051..295539	+	162	163842555	ureE	BSUIS_A0294	-	urease accessory protein UreE
279	 63.17	+1	295511..296197	+	228	163842556	ureF	BSUIS_A0295	-	urease accessory protein ureF
280	 57.26	0	296194..296820	+	208	163842557	ureG	BSUIS_A0296	-	urease accessory protein UreG
281	 57.93	0	296995..298803	-	602	163842558	luxN	BSUIS_A0298	-	autoinducer 1 sensor kinase/phosphatase luxN
282	 54.25	0	298820..299125	-	101	163842559	-	BSUIS_A0299	-	hypothetical protein
283	 60.68	0	299088..300239	+	383	163842560	-	BSUIS_A0300	-	RND family efflux transporter MFP subunit
284	 60.31	0	300254..303385	+	1043	163842561	-	BSUIS_A0301	-	acriflavin resistance protein
285	 60.00	0	303508..304977	-	489	163842562	hydA	BSUIS_A0302	-	dihydropyrimidinase
286	 59.94	0	305029..306276	-	415	163842563	-	BSUIS_A0303	-	allantoate amidohydrolase
287	 55.12	0	306495..307178	+	227	163842564	-	BSUIS_A0304	-	TetR family transcriptional regulator
288	 61.28	+1	307175..307564	+	129	163842565	-	BSUIS_A0305	-	NUDIX hydrolase
289	 60.79	0	307609..308919	-	436	163842566	-	BSUIS_A0306	-	dihydropyrimidine dehydrogenase
290	 60.92	0	308923..310419	-	498	163842567	-	BSUIS_A0307	-	putative oxidoreductase
291	 54.62	0	310296..310544	+	82	163842568	-	BSUIS_A0308	-	hypothetical protein
292	 56.29	0	310607..311059	-	150	163842569	-	BSUIS_A0309	-	carbon monoxide dehydrogenase subunit G
293	 60.61	0	311210..312859	+	549	163842570	pgi	BSUIS_A0310	-	glucose-6-phosphate isomerase
294	 58.57	0	313095..314156	+	353	163842571	-	BSUIS_A0311	-	succinylglutamate desuccinylase/aspartoacylase
295	 60.27	0	314153..314902	+	249	163842572	-	BSUIS_A0312	-	HAD family hydrolase
296	 59.22	0	314875..315747	-	290	163842573	-	BSUIS_A0313	-	hypothetical protein
297	 59.22	0	315773..317518	-	581	163842574	-	BSUIS_A0314	-	acyl-CoA synthetase
298	 56.35	0	317869..318498	-	209	163842575	ttgR	BSUIS_A0315	-	HTH-type transcriptional regulator ttgR
299	 60.11	0	318629..318811	-	60	163842576	-	BSUIS_A0316	-	hypothetical protein
300	 59.88	0	318671..319864	+	397	163842577	-	BSUIS_A0317	-	RND family efflux transporter MFP subunit
301	 60.08	0	319861..323019	+	1052	163842578	-	BSUIS_A0318	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
302	 52.98	0	323130..323297	-	55	163842579	-	BSUIS_A0319	-	hypothetical protein
303	 48.23	-2	323518..323658	-	46	163842580	-	BSUIS_A0320	-	hypothetical protein
304	 58.13	0	323727..324569	-	280	163842581	-	BSUIS_A0321	-	extracellular solute-binding protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.