IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.01   STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.54	0	634..2274	+	546	163842278	dnaA	BSUIS_A0001	-	chromosomal replication initiation protein
2	 58.71	0	2503..3696	+	397	163842279	dnaN	BSUIS_A0002	-	DNA polymerase III subunit beta
3	 61.30	+1	3878..5032	+	384	163842280	recF	BSUIS_A0003	-	recombination protein F
4	 61.30	+1	5070..5852	+	260	163842281	-	BSUIS_A0004	-	molybdopterin biosynthesis protein MoeB
5	 57.47	0	5869..6825	-	318	163842282	-	BSUIS_A0005	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
6	 59.16	0	6822..8447	-	541	163842283	-	BSUIS_A0006	-	ABC transporter related
7	 58.07	0	8471..9610	-	379	163842284	-	BSUIS_A0007	-	binding-protein-dependent transport systems inner membrane component
8	 55.83	0	9610..10707	-	365	163842285	-	BSUIS_A0008	-	hypothetical protein
9	 57.31	0	10819..12666	-	615	163842286	-	BSUIS_A0009	-	extracellular solute-binding protein
10	 55.91	0	12680..14548	-	622	163842287	-	BSUIS_A0010	-	extracellular solute-binding protein
11	 53.40	0	14779..15102	-	107	163842288	-	BSUIS_A0011	-	hypothetical protein
12	 48.26	-2	15148..15348	-	66	163842289	-	BSUIS_A0012	-	hypothetical protein
13	 36.48	-2	15388..15546	-	52	163842290	-	BSUIS_A0013	-	hypothetical protein
14	 59.26	0	16002..17108	-	368	163842291	-	BSUIS_A0014	-	branched-chain amino acid ABC transporter, perisplasmic amino acid-binding protein
15	 54.95	0	17065..17286	+	73	163842292	-	BSUIS_A0015	-	hypothetical protein
16	 52.74	-1	17380..17580	+	66	163842293	-	BSUIS_A0016	-	hypothetical protein
17	 61.64	+1	17577..18371	-	264	163842294	-	BSUIS_A0017	-	enoyl-CoA hydratase
18	 59.38	0	18368..19231	-	287	163842295	-	BSUIS_A0018	-	hydroxymethylglutaryl-CoA lyase
19	 62.17	+1	19224..21245	-	673	163842296	-	BSUIS_A0019	-	biotin carboxylase
20	 62.00	+1	21257..22864	-	535	163842297	-	BSUIS_A0020	-	propionyl-CoA carboxylase
21	 58.78	0	22864..24042	-	392	163842298	-	BSUIS_A0021	-	isovaleryl-CoA dehydrogenase
22	 53.10	0	26355..26789	-	144	163842299	-	BSUIS_A0023	-	CHRD domain-containing protein
23	 55.73	0	28611..28994	-	127	163842300	-	BSUIS_A0026	-	hypothetical protein
24	 61.27	0	29379..30731	+	450	163842301	aroA	BSUIS_A0027	-	3-phosphoshikimate 1-carboxyvinyltransferase
25	 62.58	+1	30728..31387	+	219	163842302	cmk	BSUIS_A0028	-	cytidylate kinase
26	 58.02	0	31603..33303	+	566	163842303	rpsA	BSUIS_A0029	-	30S ribosomal protein S1
27	 59.74	0	33721..34731	-	336	163842304	-	BSUIS_A0030	-	hypothetical protein
28	 57.33	0	34847..35746	+	299	163842305	-	BSUIS_A0031	-	LysR family transcriptional regulator
29	 29.86	-2	35740..36315	-	191	163842306	-	BSUIS_A0032	-	hypothetical protein
30	 55.11	0	36351..37622	-	423	163842307	-	BSUIS_A0033	-	lytic murein transglycosylase
31	 60.73	0	37638..38243	-	201	163842308	recR	BSUIS_A0034	-	recombination protein RecR
32	 59.88	0	38374..38697	-	107	163842309	-	BSUIS_A0035	-	hypothetical protein
33	 61.80	+1	38722..40530	-	602	163842310	dnaX	BSUIS_A0036	-	DNA polymerase III subunits gamma and tau
34	 61.23	0	40812..41216	+	134	163842311	-	BSUIS_A0038	-	histidine triad (HIT) protein
35	 60.23	0	41245..42192	+	315	163842312	-	BSUIS_A0039	-	peroxisomal NADH pyrophosphatase NUDT12
36	 58.45	0	42193..43056	-	287	163842313	pheA	BSUIS_A0040	-	prephenate dehydratase
37	 60.58	0	43145..43900	-	251	163842314	kdsB	BSUIS_A0041	-	3-deoxy-manno-octulosonate cytidylyltransferase
38	 56.98	0	44278..44886	+	202	163842315	-	BSUIS_A0042	-	cytochrome c
39	 61.70	+1	44931..45896	-	321	163842316	-	BSUIS_A0043	-	hypothetical protein
40	 50.16	-1	45952..46260	+	102	163842317	-	BSUIS_A0044	-	hypothetical protein
41	 56.02	0	46435..47448	+	337	163842318	cyoA	BSUIS_A0045	-	ubiquinol oxidase, subunit II
42	 57.93	0	47528..49507	+	659	163842319	cyoB	BSUIS_A0046	-	cytochrome o ubiquinol oxidase, subunit I
43	 58.10	0	49511..50140	+	209	163842320	cyoC	BSUIS_A0047	-	cytochrome o ubiquinol oxidase, subunit III
44	 55.46	0	50140..50505	+	121	163842321	cyoD	BSUIS_A0048	-	cytochrome o ubiquinol oxidase subunit IV
45	 50.54	-1	50502..50780	-	92	163842322	-	BSUIS_A0049	-	hypothetical protein
46	 64.63	+1	50956..51543	+	195	163842323	-	BSUIS_A0050	-	SH3 type 3 domain-containing protein
47	 59.22	0	52139..54058	+	639	163842324	-	BSUIS_A0051	-	surface antigen (D15)
48	 59.87	0	54055..58794	+	1579	163842325	-	BSUIS_A0052	-	hypothetical protein
49	 57.58	0	58939..59664	+	241	163842326	-	BSUIS_A0053	-	ErfK/YbiS/YcfS/YnhG family protein
50	 55.56	0	59715..59930	-	71	163842327	-	BSUIS_A0054	-	hypothetical protein
51	 58.63	0	60000..60509	-	169	163842328	-	BSUIS_A0055	-	hypothetical protein
52	 61.19	0	60840..61040	-	66	163842329	-	BSUIS_A0056	-	hypothetical protein
53	 58.61	0	61051..62055	-	334	163842330	-	BSUIS_A0057	-	hypothetical protein
54	 59.40	0	62190..62588	-	132	163842331	-	BSUIS_A0058	-	hypothetical protein
55	 58.59	0	62865..63260	-	131	163842332	-	BSUIS_A0059	-	glyoxalase/bleomycin resistance protein/dioxygenase
56	 62.11	+1	63457..64620	+	387	163842333	-	BSUIS_A0060	-	nucleotide-binding protein-like protein
57	 57.90	0	64865..66496	-	543	163842334	pgm	BSUIS_A0061	-	phosphoglucomutase
58	 44.62	-2	66552..66737	-	61	163842335	-	BSUIS_A0062	-	hypothetical protein
59	 59.73	0	66712..67605	-	297	163842336	-	BSUIS_A0063	-	LysR family transcriptional regulator
60	 54.65	0	67730..68653	+	307	163842337	-	BSUIS_A0064	-	hypothetical protein
61	 58.94	0	68726..69424	+	232	163842338	-	BSUIS_A0065	-	putative fructose transport system kinase
62	 58.99	0	69524..70213	+	229	163842339	-	BSUIS_A0066	-	fumarylacetoacetate hydrolase domain-containing protein
63	 52.60	-1	70233..70424	+	63	163842340	-	BSUIS_A0067	-	hypothetical protein
64	 46.30	-2	70486..70701	+	71	163842341	-	BSUIS_A0068	-	hypothetical protein
65	 51.85	-1	70867..71055	+	62	163842342	-	BSUIS_A0069	-	hypothetical protein
66	 62.38	+1	71070..71933	+	287	163842343	-	BSUIS_A0070	-	lytic transglycosylase catalytic
67	 57.84	0	72119..72775	+	218	163842344	-	BSUIS_A0071	-	hemolysin-3
68	 64.71	+1	76052..77638	-	528	163842345	-	BSUIS_A0073	-	hypothetical protein
69	 64.00	+1	77529..78392	-	287	163842346	-	BSUIS_A0074	-	hypothetical protein
70	 52.97	0	78911..81472	+	853	163842347	-	BSUIS_A0075	-	hypothetical protein
71	 53.52	0	81492..82229	+	245	163842348	-	BSUIS_A0076	-	invasion associated locus B family protein
72	 58.23	0	82308..83528	-	406	163842349	argG	BSUIS_A0077	-	argininosuccinate synthase
73	 57.54	0	84378..84881	-	167	163842350	-	BSUIS_A0079	-	hypothetical protein
74	 59.14	0	84915..86150	-	411	163842351	-	BSUIS_A0080	-	radical SAM protein
75	 50.52	-1	86094..86285	+	63	163842352	-	BSUIS_A0081	-	hypothetical protein
76	 55.38	0	86270..86464	+	64	163842353	-	BSUIS_A0082	-	hypothetical protein
77	 57.54	0	86410..86913	-	167	163842354	-	BSUIS_A0083	-	hypothetical protein
78	 61.58	+1	87238..87768	-	176	163842355	-	BSUIS_A0084	-	hypothetical protein
79	 54.76	0	87856..88149	-	97	163842356	-	BSUIS_A0085	-	pterin-4-alpha-carbinolamine dehydratase
80	 55.61	0	88376..88981	+	201	163842357	-	BSUIS_A0086	-	protein tyrosine phosphatase
81	 61.25	0	88891..89481	-	196	163842358	-	BSUIS_A0087	-	2'-5' RNA ligase
82	 55.92	0	89662..90387	-	241	163842359	-	BSUIS_A0088	-	arylesterase precursor
83	 61.73	+1	90534..91262	+	242	163842360	-	BSUIS_A0089	-	ABC transporter related
84	 61.65	+1	91259..93808	+	849	163842361	-	BSUIS_A0090	-	hypothetical protein
85	 57.99	0	94044..94781	+	245	163842362	-	BSUIS_A0092	-	hypothetical protein
86	 59.44	0	94896..95435	+	179	163842363	pat	BSUIS_A0093	-	phosphinothricin N-acetyltransferase
87	 54.73	0	95455..95856	-	133	163842364	-	BSUIS_A0094	-	hypothetical protein
88	 57.01	0	96406..97140	-	244	163842365	-	BSUIS_A0095	-	hypothetical protein
89	 56.74	0	97293..97433	-	46	163842366	-	BSUIS_A0096	-	hypothetical protein
90	 60.27	0	97417..100104	-	895	163842367	acnA	BSUIS_A0097	-	aconitate hydratase
91	 58.33	0	100448..101095	+	215	163842368	ccmA	BSUIS_A0098	-	cytochrome c biogenesis protein CcmA
92	 62.01	+1	101095..101760	+	221	163842369	ccmB	BSUIS_A0099	-	heme exporter protein CcmB
93	 58.52	0	101818..102603	+	261	163842370	ccmC	BSUIS_A0100	-	heme exporter protein CcmC
94	 56.90	0	102600..102773	+	57	163842371	-	BSUIS_A0101	-	Heme exporter protein D (CcmD)
95	 59.31	0	102770..103381	+	203	163842372	dsbE	BSUIS_A0102	-	DsbE subfamily periplasmic protein thiol:disulfide oxidoreductase
96	 61.00	0	103630..105465	-	611	163842373	ilvD	BSUIS_A0103	-	dihydroxy-acid dehydratase
97	 54.35	0	105647..105784	+	45	163842374	-	BSUIS_A0104	-	hypothetical protein
98	 61.57	+1	105865..106296	-	143	163842375	-	BSUIS_A0105	-	hypothetical protein
99	 59.79	0	106323..106700	-	125	163842376	-	BSUIS_A0106	-	response regulator receiver protein
100	 49.37	-1	106875..107111	-	78	163842377	-	BSUIS_A0107	-	AsnC family transcriptional regulator
57.01	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.