IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1802	 56.72	0	1800968..1802878	-	636	163844079	gidA	BSUIS_A1902	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1803	 52.75	0	1803105..1804433	-	442	163844080	trmE	BSUIS_A1903	-	tRNA modification GTPase TrmE
1804	 54.87	0	1804548..1806548	+	666	163844081	-	BSUIS_A1904	-	spermatogenesis-associated protein 20 precursor
1805	 55.21	0	1806633..1807898	-	421	163844082	rho	BSUIS_A1905	-	transcription termination factor Rho
1806	 54.00	0	1808280..1808816	-	178	163844083	-	BSUIS_A1906	-	hypothetical protein
1807	 55.56	0	1808813..1809838	-	341	163844084	hemE	BSUIS_A1907	-	uroporphyrinogen decarboxylase
1808	 55.00	0	1810102..1811130	+	342	163844085	-	BSUIS_A1908	-	hypothetical protein
1809	 54.50	0	1811127..1811726	+	199	163844086	maf	BSUIS_A1909	-	Maf-like protein
1810	 58.39	0	1811719..1812588	+	289	163844087	aroE	BSUIS_A1910	-	shikimate 5-dehydrogenase
1811	 57.38	0	1812585..1813187	+	200	163844088	coaE	BSUIS_A1911	-	dephospho-CoA kinase
1812	 58.30	0	1813229..1813933	+	234	163844089	dnaQ	BSUIS_A1912	-	DNA polymerase III subunit epsilon
1813	 56.91	0	1813992..1814483	-	163	163844090	secB	BSUIS_A1913	-	preprotein translocase subunit SecB
1814	 59.64	0	1814603..1815100	-	165	163844091	fxsA	BSUIS_A1914	-	FxsA
1815	 55.46	0	1815317..1816012	+	231	163844092	-	BSUIS_A1915	-	import inner membrane translocase subunit Tim44
1816	 60.18	0	1816076..1817185	+	369	163844093	-	BSUIS_A1916	-	MltA domain-containing protein
1817	 63.02	+1	1817191..1817793	+	200	163844094	-	BSUIS_A1917	-	Smr protein/MutS2
1818	 57.78	0	1817790..1818104	+	104	163844095	-	BSUIS_A1918	-	XRE family transcriptional regulator
1819	 56.37	0	1818180..1819199	-	339	163844096	-	BSUIS_A1919	-	hypothetical protein
1820	 59.77	0	1819346..1820650	-	434	163844097	hslU	BSUIS_A1920	-	ATP-dependent protease ATP-binding subunit
1821	 59.64	0	1820724..1821278	-	184	163844098	hslV	BSUIS_A1921	-	ATP-dependent protease peptidase subunit
1822	 51.77	-1	1821310..1821591	-	93	163844099	-	BSUIS_A1922	-	hypothetical protein
1823	 59.77	0	1821575..1822183	+	202	163844100	hisB	BSUIS_A1923	-	imidazoleglycerol-phosphate dehydratase
1824	 59.80	0	1822295..1822804	+	169	163844101	-	BSUIS_A1924	-	hypothetical protein
1825	 57.76	0	1822807..1823457	+	216	163844102	hisH	BSUIS_A1925	-	imidazole glycerol phosphate synthase subunit HisH
1826	 59.84	0	1823462..1824193	+	243	163844103	hisA	BSUIS_A1926	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1827	 60.18	0	1824190..1824975	+	261	163844104	hisF	BSUIS_A1927	-	imidazole glycerol phosphate synthase subunit HisF
1828	 62.04	+1	1825111..1825434	+	107	163844105	hisE	BSUIS_A1928	-	phosphoribosyl-ATP pyrophosphatase
1829	 57.59	0	1825449..1826417	+	322	163844106	coaA	BSUIS_A1929	-	pantothenate kinase
1830	 59.36	0	1826480..1826917	-	145	163844107	-	BSUIS_A1930	-	hypothetical protein
1831	 50.57	-1	1828923..1829096	-	57	163844108	-	BSUIS_A1932	-	hypothetical protein
1832	 58.33	0	1829041..1829760	+	239	163844109	chvI	BSUIS_A1933	-	transcriptional regulatory protein chvI
1833	 59.36	0	1829871..1831676	+	601	163844110	chvG	BSUIS_A1934	-	sensor protein chvG
1834	 60.21	0	1831702..1832181	+	159	163844111	hprK	BSUIS_A1935	-	HPr kinase/phosphorylase
1835	 55.22	0	1832433..1832834	+	133	163844112	-	BSUIS_A1936	-	PTS system fructose subfamily IIA component
1836	 59.37	0	1832838..1833152	+	104	163844113	-	BSUIS_A1937	-	HPr family phosphocarrier protein
1837	 50.63	-1	1833216..1833533	+	105	163844114	-	BSUIS_A1938	-	hypothetical protein
1838	 58.24	0	1833530..1834930	+	466	163844115	ahcY	BSUIS_A1939	-	S-adenosyl-L-homocysteine hydrolase
1839	 60.58	0	1835315..1837894	+	859	163844116	-	BSUIS_A1940	-	histidine kinase
1840	 59.14	0	1837903..1839444	+	513	163844117	-	BSUIS_A1941	-	hypothetical protein
1841	 59.44	0	1839431..1840150	+	239	163844118	-	BSUIS_A1942	-	nucleotidyl transferase
1842	 62.80	+1	1840165..1843323	+	1052	163844119	addB	BSUIS_A1943	-	double-strand break repair protein AddB
1843	 61.47	+1	1843320..1846862	+	1180	163844120	addA	BSUIS_A1944	-	double-strand break repair helicase AddA
1844	 58.33	0	1847044..1847367	+	107	163844121	trx	BSUIS_A1945	-	thioredoxin
1845	 59.89	0	1847581..1848909	-	442	163844122	folC	BSUIS_A1946	-	FolC bifunctional protein
1846	 57.40	0	1848912..1849817	-	301	163844123	accD	BSUIS_A1947	-	acetyl-CoA carboxylase subunit beta
1847	 58.69	0	1849878..1850717	-	279	163844124	trpA	BSUIS_A1948	-	tryptophan synthase subunit alpha
1848	 62.61	+1	1850714..1851181	-	155	163844125	-	BSUIS_A1949	-	hypothetical protein
1849	 59.87	0	1851184..1852404	-	406	163844126	trpB	BSUIS_A1950	-	tryptophan synthase subunit beta
1850	 58.59	0	1852424..1853092	-	222	163844127	trpF	BSUIS_A1951	-	N-(5'-phosphoribosyl)anthranilate isomerase
1851	 58.02	0	1853131..1853766	-	211	163844128	-	BSUIS_A1952	-	hypothetical protein
1852	 60.37	0	1853763..1854524	-	253	163844129	-	BSUIS_A1953	-	hypothetical protein
1853	 59.73	0	1854633..1855079	-	148	163844130	-	BSUIS_A1954	-	hypothetical protein
1854	 61.98	+1	1855261..1856412	-	383	163844131	-	BSUIS_A1955	-	benzoate transporter
1855	 60.23	0	1856426..1857217	-	263	163844132	-	BSUIS_A1956	-	hypothetical protein
1856	 54.57	0	1857649..1858053	+	134	163844133	infC	BSUIS_A1957	-	translation initiation factor IF-3
1857	 54.80	0	1858182..1858796	+	204	163844134	nccN	BSUIS_A1958	-	nickel-cobalt-cadmium resistance protein nccN
1858	 57.71	0	1859063..1859263	+	66	163844135	rpmI	BSUIS_A1959	-	50S ribosomal protein L35
1859	 57.78	0	1859291..1859695	+	134	163844136	rplT	BSUIS_A1960	-	50S ribosomal protein L20
1860	 57.76	0	1859640..1860650	+	336	163844137	-	BSUIS_A1961	-	hypothetical protein
1861	 59.19	0	1860711..1861820	+	369	163844138	pheS	BSUIS_A1962	-	phenylalanyl-tRNA synthetase subunit alpha
1862	 60.50	0	1861842..1864256	+	804	163844139	pheT	BSUIS_A1963	-	phenylalanyl-tRNA synthetase subunit beta
1863	 57.84	0	1864197..1867595	-	1132	163844198	-	BSUIS_A2024	-	NAD-specific glutamate dehydrogenase
1864	 58.05	0	1864326..1865312	+	328	163844140	-	BSUIS_A1964	-	hypothetical protein
1865	 58.41	0	1865538..1867451	+	637	163844141	dnaK	BSUIS_A1965	-	molecular chaperone DnaK
1866	 59.61	0	1867696..1868829	+	377	163844142	dnaJ	BSUIS_A1966	-	chaperone protein DnaJ
1867	 56.33	0	1868950..1869549	+	199	163844143	-	BSUIS_A1967	-	phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase
1868	 60.25	0	1869759..1870475	+	238	163844144	pyrF	BSUIS_A1968	-	orotidine 5'-phosphate decarboxylase
1869	 58.33	0	1870524..1870811	+	95	163844145	-	BSUIS_A1969	-	hypothetical protein
1870	 58.08	0	1870849..1872036	-	395	163844146	-	BSUIS_A1970	-	regucalcin
1871	 58.89	0	1871972..1872910	+	312	163844147	gshB	BSUIS_A1971	-	glutathione synthetase
1872	 62.26	+1	1872987..1874552	+	521	163844148	-	BSUIS_A1972	-	Mg chelatase-related protein
1873	 57.81	0	1874601..1875221	-	206	163844149	-	BSUIS_A1973	-	transglutaminase family protein cysteine peptidase BTLCP
1874	 60.78	0	1875669..1876025	-	118	163844150	rlpA	BSUIS_A1974	-	rare lipoprotein A
1875	 42.92	-2	1876184..1876402	+	72	163844151	-	BSUIS_A1975	-	hypothetical protein
1876	 61.54	+1	1876635..1876985	+	116	163844152	-	BSUIS_A1976	-	hypothetical protein
1877	 56.73	0	1877140..1878186	+	348	163844153	-	BSUIS_A1977	-	hypothetical protein
1878	 60.23	0	1878328..1879818	+	496	163844154	pstC	BSUIS_A1978	-	phosphate ABC transporter, permease protein PstC
1879	 59.88	0	1879818..1881128	+	436	163844155	pstA	BSUIS_A1979	-	phosphate ABC transporter, permease protein PstA
1880	 59.12	0	1881145..1881966	+	273	163844156	pstB	BSUIS_A1980	-	phosphate ABC transporter, ATP-binding protein
1881	 57.54	0	1882032..1882754	+	240	163844157	phoU	BSUIS_A1981	-	phosphate transport system regulatory protein PhoU
1882	 61.86	+1	1882872..1883558	+	228	163844158	phoB	BSUIS_A1982	-	phosphate regulon transcriptional regulatory protein PhoB
1883	 48.43	-2	1883914..1884072	-	52	163844159	-	BSUIS_A1983	-	hypothetical protein
1884	 61.98	+1	1884144..1885124	+	326	163844160	-	BSUIS_A1984	-	cell wall hydrolase SleB
1885	 54.32	0	1885234..1885557	-	107	163844161	-	BSUIS_A1985	-	lipoprotein
1886	 60.77	0	1885634..1886887	+	417	163844162	-	BSUIS_A1986	-	aminopeptidase T
1887	 55.62	0	1887048..1887545	-	165	163844163	dps	BSUIS_A1987	-	DNA starvation/stationary phase protection protein Dps
1888	 60.58	0	1887828..1888517	+	229	163844164	-	BSUIS_A1988	-	peptidase M22 glycoprotease
1889	 61.08	0	1888522..1889022	+	166	163844165	rimI	BSUIS_A1989	-	ribosomal-protein-alanine acetyltransferase
1890	 59.95	0	1889019..1889822	+	267	163844166	plsC	BSUIS_A1990	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1891	 61.04	0	1889880..1891283	+	467	163844167	-	BSUIS_A1991	-	RNA modification protein
1892	 61.08	0	1891520..1892503	+	327	163844168	-	BSUIS_A1992	-	hypothetical protein
1893	 55.03	0	1892639..1893145	+	168	163844169	-	BSUIS_A1993	-	hypothetical protein
1894	 59.96	0	1893148..1894266	+	372	163844170	tlyC	BSUIS_A1994	-	hemolysin C
1895	 60.23	0	1894263..1895861	+	532	163844171	lnt	BSUIS_A1995	-	apolipoprotein N-acyltransferase
1896	 53.14	0	1896008..1896421	+	137	163844172	-	BSUIS_A1996	-	hypothetical protein
1897	 60.43	0	1896648..1897913	+	421	163844173	metK	BSUIS_A1997	-	S-adenosylmethionine synthetase
1898	 61.54	+1	1897922..1898623	+	233	163844174	trmB	BSUIS_A1998	-	tRNA (guanine-N(7))-methyltransferase
1899	 59.09	0	1898803..1899462	+	219	163844175	-	BSUIS_A1999	-	hypothetical protein
1900	 59.23	0	1899515..1901128	+	537	163844176	nusA	BSUIS_A2000	-	transcription elongation factor NusA
1901	 60.70	0	1901510..1902112	+	200	163844177	-	BSUIS_A2001	-	hypothetical protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.