IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1745	 57.84	0	1740773..1740874	-	33	163844022	-	BSUIS_A1841	-	hypothetical protein
1746	 58.37	0	1741120..1741806	+	228	163844023	-	BSUIS_A1842	-	aquaporin Z
1747	 55.03	0	1742187..1742882	+	231	163844024	-	BSUIS_A1843	-	outer membrane lipoprotein carrier protein LolA
1748	 58.24	0	1742985..1743791	+	268	163844025	-	BSUIS_A1844	-	exodeoxyribonuclease III (xth)
1749	 61.69	+1	1743797..1744258	-	153	163844026	-	BSUIS_A1845	-	cAMP-dependent protein kinase regulatory subunit
1750	 55.85	0	1744293..1744976	-	227	163844027	pmrA	BSUIS_A1846	-	transcriptional regulatory protein basR/pmrA
1751	 61.17	0	1745184..1745729	+	181	163844028	-	BSUIS_A1847	-	hypothetical protein
1752	 44.67	-2	1745790..1746089	+	99	163844029	-	BSUIS_A1848	-	hypothetical protein
1753	 45.95	-2	1746118..1747647	-	509	163844030	-	BSUIS_A1849	-	hypothetical protein
1754	 43.15	-2	1747644..1748723	-	359	163844031	-	BSUIS_A1850	-	hypothetical protein
1755	 46.15	-2	1749050..1749439	+	129	163844032	-	BSUIS_A1851	-	hypothetical protein
1756	 43.42	-2	1749526..1751082	-	518	163844033	-	BSUIS_A1852	-	glycoprotein X precursor
1757	 58.78	0	1756178..1756849	-	223	163844034	-	BSUIS_A1855	-	hypothetical protein
1758	 59.52	0	1756929..1757222	-	97	163844035	rpmB	BSUIS_A1856	-	50S ribosomal protein L28
1759	 55.02	0	1757584..1758399	+	271	163844036	-	BSUIS_A1857	-	hypothetical protein
1760	 58.87	0	1758511..1758933	-	140	163844037	-	BSUIS_A1858	-	heavy metal-dependent transcription regulator 1
1761	 60.78	0	1759022..1761466	+	814	163844038	-	BSUIS_A1859	-	heavy metal translocating P-type ATPase
1762	 45.73	-2	1761873..1762622	+	249	163844039	-	BSUIS_A1860	-	hypothetical protein
1763	 41.25	-2	1762649..1763734	+	361	163844040	-	BSUIS_A1861	-	hypothetical protein
1764	 61.57	+1	1763907..1765808	-	633	163844041	cobT	BSUIS_A1862	-	cobaltochelatase, CobT subunit
1765	 57.85	0	1765916..1766902	-	328	163844042	cobS	BSUIS_A1863	-	cobaltochelatase, CobS subunit
1766	 63.64	+1	1766981..1767211	+	76	163844043	-	BSUIS_A1864	-	hypothetical protein
1767	 56.98	0	1767189..1767818	-	209	163844044	-	BSUIS_A1865	-	hypothetical protein
1768	 49.49	-1	1767815..1768012	-	65	163844045	-	BSUIS_A1866	-	hypothetical protein
1769	 57.78	0	1768005..1768319	+	104	163844046	-	BSUIS_A1867	-	hypothetical protein
1770	 59.40	0	1768344..1769651	-	435	163844047	-	BSUIS_A1868	-	CBS domain-containing protein
1771	 60.25	0	1769715..1770851	-	378	163844048	aroB	BSUIS_A1869	-	3-dehydroquinate synthase
1772	 58.21	0	1770944..1771546	-	200	163844049	aroK	BSUIS_A1870	-	shikimate kinase
1773	 55.91	0	1771692..1771877	+	61	163844050	-	BSUIS_A1871	-	hypothetical protein
1774	 59.63	0	1771880..1772803	+	307	163844051	xerD	BSUIS_A1872	-	site-specific tyrosine recombinase XerD
1775	 59.43	0	1772942..1773895	+	317	163844052	accA	BSUIS_A1873	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1776	 58.50	0	1774117..1775328	+	403	163844053	-	BSUIS_A1874	-	hypothetical protein
1777	 54.65	0	1775307..1775564	+	85	163844054	-	BSUIS_A1875	-	SirA family protein
1778	 59.44	0	1775582..1776757	-	391	163844055	-	BSUIS_A1876	-	cobw protein
1779	 60.83	0	1776759..1777871	-	370	163844056	-	BSUIS_A1877	-	Serine-type D-Ala-D-Ala carboxypeptidase
1780	 51.85	-1	1779315..1779449	+	44	163844057	-	BSUIS_A1879	-	hypothetical protein
1781	 59.35	0	1779517..1780281	-	254	163844058	gdhII	BSUIS_A1881	-	glucose 1-dehydrogenase 2
1782	 50.80	-1	1780389..1780823	+	144	163844059	-	BSUIS_A1882	-	hypothetical protein
1783	 44.70	-2	1780922..1781317	+	131	163844060	-	BSUIS_A1883	-	hypothetical protein
1784	 58.59	0	1781387..1783021	-	544	163844061	alkJ	BSUIS_A1884	-	alcohol dehydrogenase (acceptor)
1785	 60.52	0	1783032..1783796	-	254	163844062	nodG	BSUIS_A1885	-	3-ketoacyl-(acyl-carrier-protein) reductase
1786	 59.12	0	1783793..1785277	-	494	163844063	-	BSUIS_A1886	-	glucose-methanol-choline oxidoreductase
1787	 59.96	0	1785290..1786810	-	506	163844064	-	BSUIS_A1887	-	aldehyde dehydrogenase
1788	 61.00	0	1786804..1787580	-	258	163844065	-	BSUIS_A1888	-	enoyl-CoA hydratase/isomerase
1789	 58.11	0	1787582..1789183	-	533	163844066	-	BSUIS_A1889	-	hypothetical protein
1790	 59.78	0	1789189..1790190	-	333	163844067	-	BSUIS_A1890	-	hypothetical protein
1791	 59.30	0	1790169..1791227	-	352	163844068	-	BSUIS_A1891	-	alanine racemase
1792	 58.72	0	1791478..1792647	+	389	163844069	-	BSUIS_A1892	-	hypothetical protein
1793	 59.43	0	1792681..1793703	-	340	163844070	luxA	BSUIS_A1893	-	alkanal monooxygenase subunit alpha
1794	 55.71	0	1793700..1793909	-	69	163844071	-	BSUIS_A1894	-	hypothetical protein
1795	 60.35	0	1793972..1794937	+	321	163844072	-	BSUIS_A1895	-	hypothetical protein
1796	 58.64	0	1795581..1796465	+	294	163844073	-	BSUIS_A1896	-	hypothetical protein
1797	 59.62	0	1796462..1797256	+	264	163844074	-	BSUIS_A1897	-	ABC transporter related
1798	 59.87	0	1797418..1798461	+	347	163844075	holA	BSUIS_A1898	-	DNA polymerase III subunit delta
1799	 56.58	0	1798555..1799436	-	293	163844076	-	BSUIS_A1899	-	ParB-like partition protein
1800	 54.37	0	1799480..1800268	-	262	163844077	-	BSUIS_A1900	-	hypothetical protein
1801	 54.52	0	1800330..1800971	-	213	163844078	gidB	BSUIS_A1901	-	glucose-inhibited division protein B
1802	 56.72	0	1800968..1802878	-	636	163844079	gidA	BSUIS_A1902	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1803	 52.75	0	1803105..1804433	-	442	163844080	trmE	BSUIS_A1903	-	tRNA modification GTPase TrmE
1804	 54.87	0	1804548..1806548	+	666	163844081	-	BSUIS_A1904	-	spermatogenesis-associated protein 20 precursor
1805	 55.21	0	1806633..1807898	-	421	163844082	rho	BSUIS_A1905	-	transcription termination factor Rho
1806	 54.00	0	1808280..1808816	-	178	163844083	-	BSUIS_A1906	-	hypothetical protein
1807	 55.56	0	1808813..1809838	-	341	163844084	hemE	BSUIS_A1907	-	uroporphyrinogen decarboxylase
1808	 55.00	0	1810102..1811130	+	342	163844085	-	BSUIS_A1908	-	hypothetical protein
1809	 54.50	0	1811127..1811726	+	199	163844086	maf	BSUIS_A1909	-	Maf-like protein
1810	 58.39	0	1811719..1812588	+	289	163844087	aroE	BSUIS_A1910	-	shikimate 5-dehydrogenase
1811	 57.38	0	1812585..1813187	+	200	163844088	coaE	BSUIS_A1911	-	dephospho-CoA kinase
1812	 58.30	0	1813229..1813933	+	234	163844089	dnaQ	BSUIS_A1912	-	DNA polymerase III subunit epsilon
1813	 56.91	0	1813992..1814483	-	163	163844090	secB	BSUIS_A1913	-	preprotein translocase subunit SecB
1814	 59.64	0	1814603..1815100	-	165	163844091	fxsA	BSUIS_A1914	-	FxsA
1815	 55.46	0	1815317..1816012	+	231	163844092	-	BSUIS_A1915	-	import inner membrane translocase subunit Tim44
1816	 60.18	0	1816076..1817185	+	369	163844093	-	BSUIS_A1916	-	MltA domain-containing protein
1817	 63.02	+1	1817191..1817793	+	200	163844094	-	BSUIS_A1917	-	Smr protein/MutS2
1818	 57.78	0	1817790..1818104	+	104	163844095	-	BSUIS_A1918	-	XRE family transcriptional regulator
1819	 56.37	0	1818180..1819199	-	339	163844096	-	BSUIS_A1919	-	hypothetical protein
1820	 59.77	0	1819346..1820650	-	434	163844097	hslU	BSUIS_A1920	-	ATP-dependent protease ATP-binding subunit
1821	 59.64	0	1820724..1821278	-	184	163844098	hslV	BSUIS_A1921	-	ATP-dependent protease peptidase subunit
1822	 51.77	-1	1821310..1821591	-	93	163844099	-	BSUIS_A1922	-	hypothetical protein
1823	 59.77	0	1821575..1822183	+	202	163844100	hisB	BSUIS_A1923	-	imidazoleglycerol-phosphate dehydratase
1824	 59.80	0	1822295..1822804	+	169	163844101	-	BSUIS_A1924	-	hypothetical protein
1825	 57.76	0	1822807..1823457	+	216	163844102	hisH	BSUIS_A1925	-	imidazole glycerol phosphate synthase subunit HisH
1826	 59.84	0	1823462..1824193	+	243	163844103	hisA	BSUIS_A1926	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1827	 60.18	0	1824190..1824975	+	261	163844104	hisF	BSUIS_A1927	-	imidazole glycerol phosphate synthase subunit HisF
1828	 62.04	+1	1825111..1825434	+	107	163844105	hisE	BSUIS_A1928	-	phosphoribosyl-ATP pyrophosphatase
1829	 57.59	0	1825449..1826417	+	322	163844106	coaA	BSUIS_A1929	-	pantothenate kinase
1830	 59.36	0	1826480..1826917	-	145	163844107	-	BSUIS_A1930	-	hypothetical protein
1831	 50.57	-1	1828923..1829096	-	57	163844108	-	BSUIS_A1932	-	hypothetical protein
1832	 58.33	0	1829041..1829760	+	239	163844109	chvI	BSUIS_A1933	-	transcriptional regulatory protein chvI
1833	 59.36	0	1829871..1831676	+	601	163844110	chvG	BSUIS_A1934	-	sensor protein chvG
1834	 60.21	0	1831702..1832181	+	159	163844111	hprK	BSUIS_A1935	-	HPr kinase/phosphorylase
1835	 55.22	0	1832433..1832834	+	133	163844112	-	BSUIS_A1936	-	PTS system fructose subfamily IIA component
1836	 59.37	0	1832838..1833152	+	104	163844113	-	BSUIS_A1937	-	HPr family phosphocarrier protein
1837	 50.63	-1	1833216..1833533	+	105	163844114	-	BSUIS_A1938	-	hypothetical protein
1838	 58.24	0	1833530..1834930	+	466	163844115	ahcY	BSUIS_A1939	-	S-adenosyl-L-homocysteine hydrolase
1839	 60.58	0	1835315..1837894	+	859	163844116	-	BSUIS_A1940	-	histidine kinase
1840	 59.14	0	1837903..1839444	+	513	163844117	-	BSUIS_A1941	-	hypothetical protein
1841	 59.44	0	1839431..1840150	+	239	163844118	-	BSUIS_A1942	-	nucleotidyl transferase
1842	 62.80	+1	1840165..1843323	+	1052	163844119	addB	BSUIS_A1943	-	double-strand break repair protein AddB
1843	 61.47	+1	1843320..1846862	+	1180	163844120	addA	BSUIS_A1944	-	double-strand break repair helicase AddA
1844	 58.33	0	1847044..1847367	+	107	163844121	trx	BSUIS_A1945	-	thioredoxin
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.