IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1707	 56.16	0	1707721..1708710	-	329	163843984	ansA	BSUIS_A1802	-	L-asparaginase
1708	 54.20	0	1708788..1710095	+	435	163843985	-	BSUIS_A1803	-	major facilitator transporter
1709	 56.21	0	1710582..1710734	-	50	163843986	-	BSUIS_A1804	-	hypothetical protein
1710	 58.88	0	1710781..1712064	-	427	163843987	mdeA	BSUIS_A1805	-	methionine gamma-lyase
1711	 57.78	0	1712244..1712693	-	149	163843988	-	BSUIS_A1806	-	UspA domain-containing protein
1712	 57.86	0	1712913..1713923	+	336	163843989	cysK	BSUIS_A1807	-	cysteine synthase A
1713	 50.60	-1	1714005..1714253	-	82	163843990	-	BSUIS_A1808	-	hypothetical protein
1714	 57.19	0	1714413..1715288	-	291	163843991	mmgB	BSUIS_A1809	-	3-hydroxybutyryl-CoA dehydrogenase
1715	 60.54	0	1715774..1716703	-	309	163843992	-	BSUIS_A1810	-	electron transfer flavoprotein, alpha subunit
1716	 58.23	0	1716856..1717602	-	248	163843993	etfB	BSUIS_A1811	-	electron transfer flavoprotein subunit beta
1717	 59.66	0	1717938..1718636	+	232	163843994	-	BSUIS_A1812	-	exsB protein
1718	 56.01	0	1718636..1719001	+	121	163843995	-	BSUIS_A1813	-	hypothetical protein
1719	 58.07	0	1719001..1719756	+	251	163843996	-	BSUIS_A1814	-	radical SAM domain-containing protein
1720	 61.39	+1	1719893..1720480	-	195	163843997	-	BSUIS_A1815	-	ATP:cob(I)alamin adenosyltransferase
1721	 54.90	0	1720482..1720685	-	67	163843998	-	BSUIS_A1816	-	hypothetical protein
1722	 60.14	0	1720715..1721557	-	280	163843999	vdlC	BSUIS_A1817	-	short chain dehydrogenase
1723	 56.91	0	1721715..1722575	+	286	163844000	yihY	BSUIS_A1818	-	YihY family protein
1724	 61.32	+1	1722593..1723078	+	161	163844001	-	BSUIS_A1819	-	hypothetical protein
1725	 58.86	0	1723086..1723802	-	238	163844002	-	BSUIS_A1820	-	redoxin domain-containing protein
1726	 59.60	0	1723856..1725256	+	466	163844003	argH	BSUIS_A1821	-	argininosuccinate lyase
1727	 58.20	0	1725361..1725549	+	62	163844004	-	BSUIS_A1822	-	hypothetical protein
1728	 61.06	0	1725577..1726842	+	421	163844005	lysA	BSUIS_A1823	-	diaminopimelate decarboxylase
1729	 61.11	0	1726941..1729586	+	881	163844006	-	BSUIS_A1824	-	hypothetical protein
1730	 55.68	0	1729626..1730162	-	178	163844007	hpt	BSUIS_A1825	-	hypoxanthine phosphoribosyltransferase
1731	 62.82	+1	1730311..1731090	+	259	163844008	-	BSUIS_A1826	-	ATP synthase subunits region ORF 4
1732	 59.26	0	1731235..1732341	+	368	163844009	hisC	BSUIS_A1827	-	histidinol-phosphate aminotransferase
1733	 60.35	0	1732346..1733311	+	321	163844010	-	BSUIS_A1828	-	cyclohexadienyl dehydrogenase
1734	 57.65	0	1733280..1734299	-	339	163844011	-	BSUIS_A1829	-	hypothetical protein
1735	 49.02	-1	1734319..1734522	-	67	163844012	-	BSUIS_A1830	-	hypothetical protein
1736	 57.93	0	1734511..1735071	+	186	163844013	-	BSUIS_A1831	-	cation transport regulator-like protein 1
1737	 53.26	0	1735404..1735694	+	96	163844014	-	BSUIS_A1833	-	protein of unknown function YGGT
1738	 55.18	0	1735865..1736395	-	176	163844015	ppa	BSUIS_A1834	-	inorganic pyrophosphatase
1739	 58.62	0	1736548..1737330	-	260	163844016	-	BSUIS_A1835	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1740	 56.37	0	1737509..1738042	-	177	163844017	-	BSUIS_A1836	-	hypothetical protein
1741	 60.78	0	1738408..1739409	-	333	163844018	-	BSUIS_A1837	-	hypothetical protein
1742	 60.15	0	1739402..1740061	-	219	163844019	ftsE	BSUIS_A1838	-	cell division ATP-binding protein FtsE
1743	 53.11	0	1740066..1740242	-	58	163844020	-	BSUIS_A1839	-	hypothetical protein
1744	 56.29	0	1740419..1740736	+	105	163844021	-	BSUIS_A1840	-	hypothetical protein
1745	 57.84	0	1740773..1740874	-	33	163844022	-	BSUIS_A1841	-	hypothetical protein
1746	 58.37	0	1741120..1741806	+	228	163844023	-	BSUIS_A1842	-	aquaporin Z
1747	 55.03	0	1742187..1742882	+	231	163844024	-	BSUIS_A1843	-	outer membrane lipoprotein carrier protein LolA
1748	 58.24	0	1742985..1743791	+	268	163844025	-	BSUIS_A1844	-	exodeoxyribonuclease III (xth)
1749	 61.69	+1	1743797..1744258	-	153	163844026	-	BSUIS_A1845	-	cAMP-dependent protein kinase regulatory subunit
1750	 55.85	0	1744293..1744976	-	227	163844027	pmrA	BSUIS_A1846	-	transcriptional regulatory protein basR/pmrA
1751	 61.17	0	1745184..1745729	+	181	163844028	-	BSUIS_A1847	-	hypothetical protein
1752	 44.67	-2	1745790..1746089	+	99	163844029	-	BSUIS_A1848	-	hypothetical protein
1753	 45.95	-2	1746118..1747647	-	509	163844030	-	BSUIS_A1849	-	hypothetical protein
1754	 43.15	-2	1747644..1748723	-	359	163844031	-	BSUIS_A1850	-	hypothetical protein
1755	 46.15	-2	1749050..1749439	+	129	163844032	-	BSUIS_A1851	-	hypothetical protein
1756	 43.42	-2	1749526..1751082	-	518	163844033	-	BSUIS_A1852	-	glycoprotein X precursor
1757	 58.78	0	1756178..1756849	-	223	163844034	-	BSUIS_A1855	-	hypothetical protein
1758	 59.52	0	1756929..1757222	-	97	163844035	rpmB	BSUIS_A1856	-	50S ribosomal protein L28
1759	 55.02	0	1757584..1758399	+	271	163844036	-	BSUIS_A1857	-	hypothetical protein
1760	 58.87	0	1758511..1758933	-	140	163844037	-	BSUIS_A1858	-	heavy metal-dependent transcription regulator 1
1761	 60.78	0	1759022..1761466	+	814	163844038	-	BSUIS_A1859	-	heavy metal translocating P-type ATPase
1762	 45.73	-2	1761873..1762622	+	249	163844039	-	BSUIS_A1860	-	hypothetical protein
1763	 41.25	-2	1762649..1763734	+	361	163844040	-	BSUIS_A1861	-	hypothetical protein
1764	 61.57	+1	1763907..1765808	-	633	163844041	cobT	BSUIS_A1862	-	cobaltochelatase, CobT subunit
1765	 57.85	0	1765916..1766902	-	328	163844042	cobS	BSUIS_A1863	-	cobaltochelatase, CobS subunit
1766	 63.64	+1	1766981..1767211	+	76	163844043	-	BSUIS_A1864	-	hypothetical protein
1767	 56.98	0	1767189..1767818	-	209	163844044	-	BSUIS_A1865	-	hypothetical protein
1768	 49.49	-1	1767815..1768012	-	65	163844045	-	BSUIS_A1866	-	hypothetical protein
1769	 57.78	0	1768005..1768319	+	104	163844046	-	BSUIS_A1867	-	hypothetical protein
1770	 59.40	0	1768344..1769651	-	435	163844047	-	BSUIS_A1868	-	CBS domain-containing protein
1771	 60.25	0	1769715..1770851	-	378	163844048	aroB	BSUIS_A1869	-	3-dehydroquinate synthase
1772	 58.21	0	1770944..1771546	-	200	163844049	aroK	BSUIS_A1870	-	shikimate kinase
1773	 55.91	0	1771692..1771877	+	61	163844050	-	BSUIS_A1871	-	hypothetical protein
1774	 59.63	0	1771880..1772803	+	307	163844051	xerD	BSUIS_A1872	-	site-specific tyrosine recombinase XerD
1775	 59.43	0	1772942..1773895	+	317	163844052	accA	BSUIS_A1873	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1776	 58.50	0	1774117..1775328	+	403	163844053	-	BSUIS_A1874	-	hypothetical protein
1777	 54.65	0	1775307..1775564	+	85	163844054	-	BSUIS_A1875	-	SirA family protein
1778	 59.44	0	1775582..1776757	-	391	163844055	-	BSUIS_A1876	-	cobw protein
1779	 60.83	0	1776759..1777871	-	370	163844056	-	BSUIS_A1877	-	Serine-type D-Ala-D-Ala carboxypeptidase
1780	 51.85	-1	1779315..1779449	+	44	163844057	-	BSUIS_A1879	-	hypothetical protein
1781	 59.35	0	1779517..1780281	-	254	163844058	gdhII	BSUIS_A1881	-	glucose 1-dehydrogenase 2
1782	 50.80	-1	1780389..1780823	+	144	163844059	-	BSUIS_A1882	-	hypothetical protein
1783	 44.70	-2	1780922..1781317	+	131	163844060	-	BSUIS_A1883	-	hypothetical protein
1784	 58.59	0	1781387..1783021	-	544	163844061	alkJ	BSUIS_A1884	-	alcohol dehydrogenase (acceptor)
1785	 60.52	0	1783032..1783796	-	254	163844062	nodG	BSUIS_A1885	-	3-ketoacyl-(acyl-carrier-protein) reductase
1786	 59.12	0	1783793..1785277	-	494	163844063	-	BSUIS_A1886	-	glucose-methanol-choline oxidoreductase
1787	 59.96	0	1785290..1786810	-	506	163844064	-	BSUIS_A1887	-	aldehyde dehydrogenase
1788	 61.00	0	1786804..1787580	-	258	163844065	-	BSUIS_A1888	-	enoyl-CoA hydratase/isomerase
1789	 58.11	0	1787582..1789183	-	533	163844066	-	BSUIS_A1889	-	hypothetical protein
1790	 59.78	0	1789189..1790190	-	333	163844067	-	BSUIS_A1890	-	hypothetical protein
1791	 59.30	0	1790169..1791227	-	352	163844068	-	BSUIS_A1891	-	alanine racemase
1792	 58.72	0	1791478..1792647	+	389	163844069	-	BSUIS_A1892	-	hypothetical protein
1793	 59.43	0	1792681..1793703	-	340	163844070	luxA	BSUIS_A1893	-	alkanal monooxygenase subunit alpha
1794	 55.71	0	1793700..1793909	-	69	163844071	-	BSUIS_A1894	-	hypothetical protein
1795	 60.35	0	1793972..1794937	+	321	163844072	-	BSUIS_A1895	-	hypothetical protein
1796	 58.64	0	1795581..1796465	+	294	163844073	-	BSUIS_A1896	-	hypothetical protein
1797	 59.62	0	1796462..1797256	+	264	163844074	-	BSUIS_A1897	-	ABC transporter related
1798	 59.87	0	1797418..1798461	+	347	163844075	holA	BSUIS_A1898	-	DNA polymerase III subunit delta
1799	 56.58	0	1798555..1799436	-	293	163844076	-	BSUIS_A1899	-	ParB-like partition protein
1800	 54.37	0	1799480..1800268	-	262	163844077	-	BSUIS_A1900	-	hypothetical protein
1801	 54.52	0	1800330..1800971	-	213	163844078	gidB	BSUIS_A1901	-	glucose-inhibited division protein B
1802	 56.72	0	1800968..1802878	-	636	163844079	gidA	BSUIS_A1902	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1803	 52.75	0	1803105..1804433	-	442	163844080	trmE	BSUIS_A1903	-	tRNA modification GTPase TrmE
1804	 54.87	0	1804548..1806548	+	666	163844081	-	BSUIS_A1904	-	spermatogenesis-associated protein 20 precursor
1805	 55.21	0	1806633..1807898	-	421	163844082	rho	BSUIS_A1905	-	transcription termination factor Rho
1806	 54.00	0	1808280..1808816	-	178	163844083	-	BSUIS_A1906	-	hypothetical protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.