IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1669	 59.30	0	1670954..1673968	-	1004	163843946	sucA	BSUIS_A1763	-	alpha-ketoglutarate decarboxylase
1670	 56.67	0	1674105..1674254	+	49	163843947	-	BSUIS_A1764	-	hypothetical protein
1671	 60.69	0	1674244..1675146	-	300	163843948	-	BSUIS_A1765	-	succinyl-CoA synthetase subunit alpha
1672	 57.64	0	1675150..1676346	-	398	163843949	-	BSUIS_A1766	-	succinyl-CoA synthetase subunit beta
1673	 61.37	+1	1676453..1677415	-	320	163843950	mdh	BSUIS_A1767	-	malate dehydrogenase
1674	 52.26	-1	1677535..1677777	-	80	163843951	-	BSUIS_A1768	-	hypothetical protein
1675	 57.65	0	1677883..1679046	-	387	163843952	-	BSUIS_A1769	-	AFG1 family ATPase
1676	 63.48	+1	1679166..1679699	-	177	163843953	-	BSUIS_A1770	-	hypothetical protein
1677	 50.00	-1	1679829..1680032	-	67	163843954	-	BSUIS_A1771	-	hypothetical protein
1678	 63.16	+1	1680063..1680974	+	303	163843955	dapF	BSUIS_A1772	-	diaminopimelate epimerase
1679	 60.05	0	1680974..1682257	+	427	163843956	-	BSUIS_A1773	-	MiaB-like tRNA modifying enzyme
1680	 60.73	0	1682279..1683676	+	465	163843957	ftsY	BSUIS_A1774	-	signal recognition particle-docking protein FtsY
1681	 56.11	0	1683676..1684338	+	220	163843958	ispZ	BSUIS_A1775	-	intracellular septation protein A
1682	 58.24	0	1684362..1685144	+	260	163843959	gloB	BSUIS_A1776	-	hydroxyacylglutathione hydrolase
1683	 54.47	0	1685191..1685682	+	163	163843960	-	BSUIS_A1777	-	hypothetical protein
1684	 56.21	0	1685747..1686052	-	101	163843961	-	BSUIS_A1778	-	hypothetical protein
1685	 59.71	0	1686164..1686580	-	138	163843962	-	BSUIS_A1779	-	mutator MutT protein
1686	 59.72	0	1686577..1687368	-	263	163843963	-	BSUIS_A1780	-	GCN5-related N-acetyltransferase
1687	 60.87	0	1687426..1688667	-	413	163843964	argJ	BSUIS_A1781	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1688	 52.78	0	1688901..1689044	-	47	163843965	-	BSUIS_A1782	-	hypothetical protein
1689	 57.73	0	1689105..1690100	-	331	163843966	plp	BSUIS_A1783	-	parvulin-like PPIase precursor
1690	 47.62	-2	1690228..1690395	-	55	163843967	-	BSUIS_A1784	-	hypothetical protein
1691	 58.65	0	1690439..1693159	+	906	163843968	secA	BSUIS_A1785	-	preprotein translocase subunit SecA
1692	 44.68	-2	1693187..1693327	+	46	163843969	-	BSUIS_A1786	-	hypothetical protein
1693	 58.97	0	1693936..1695222	+	428	163843970	-	BSUIS_A1787	-	hypothetical protein
1694	 55.54	0	1695391..1697025	+	544	163843971	-	BSUIS_A1788	-	sulfatase
1695	 46.08	-2	1697379..1697480	+	33	163843972	-	BSUIS_A1789	-	hypothetical protein
1696	 59.04	0	1698194..1699177	-	327	163843973	oxyR	BSUIS_A1791	-	hydrogen peroxide-inducible genes activator
1697	 42.47	-2	1699217..1699402	-	61	163843974	-	BSUIS_A1792	-	hypothetical protein
1698	 58.04	0	1699468..1700313	+	281	163843975	patH	BSUIS_A1793	-	amino acid ABC transporter
1699	 58.51	0	1700400..1701098	+	232	163843976	-	BSUIS_A1794	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1700	 57.95	0	1701103..1701825	+	240	163843977	-	BSUIS_A1795	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1701	 59.80	0	1701822..1702637	+	271	163843978	occP	BSUIS_A1796	-	octopine permease ATP-binding protein P
1702	 60.45	0	1702658..1703671	+	337	163843979	pah	BSUIS_A1797	-	proclavaminate amidinohydrolase
1703	 58.61	0	1703680..1705131	+	483	163843980	aspA	BSUIS_A1798	-	aspartate ammonia-lyase
1704	 57.54	0	1705115..1705870	+	251	163843981	bztD	BSUIS_A1799	-	glutamate/glutamine/aspartate/asparagine transport ATP-binding protein bztD
1705	 58.76	0	1705879..1706877	+	332	163843982	ansA	BSUIS_A1800	-	L-asparaginase
1706	 51.75	-1	1707014..1707697	-	227	163843983	-	BSUIS_A1801	-	GntR family transcriptional regulator
1707	 56.16	0	1707721..1708710	-	329	163843984	ansA	BSUIS_A1802	-	L-asparaginase
1708	 54.20	0	1708788..1710095	+	435	163843985	-	BSUIS_A1803	-	major facilitator transporter
1709	 56.21	0	1710582..1710734	-	50	163843986	-	BSUIS_A1804	-	hypothetical protein
1710	 58.88	0	1710781..1712064	-	427	163843987	mdeA	BSUIS_A1805	-	methionine gamma-lyase
1711	 57.78	0	1712244..1712693	-	149	163843988	-	BSUIS_A1806	-	UspA domain-containing protein
1712	 57.86	0	1712913..1713923	+	336	163843989	cysK	BSUIS_A1807	-	cysteine synthase A
1713	 50.60	-1	1714005..1714253	-	82	163843990	-	BSUIS_A1808	-	hypothetical protein
1714	 57.19	0	1714413..1715288	-	291	163843991	mmgB	BSUIS_A1809	-	3-hydroxybutyryl-CoA dehydrogenase
1715	 60.54	0	1715774..1716703	-	309	163843992	-	BSUIS_A1810	-	electron transfer flavoprotein, alpha subunit
1716	 58.23	0	1716856..1717602	-	248	163843993	etfB	BSUIS_A1811	-	electron transfer flavoprotein subunit beta
1717	 59.66	0	1717938..1718636	+	232	163843994	-	BSUIS_A1812	-	exsB protein
1718	 56.01	0	1718636..1719001	+	121	163843995	-	BSUIS_A1813	-	hypothetical protein
1719	 58.07	0	1719001..1719756	+	251	163843996	-	BSUIS_A1814	-	radical SAM domain-containing protein
1720	 61.39	+1	1719893..1720480	-	195	163843997	-	BSUIS_A1815	-	ATP:cob(I)alamin adenosyltransferase
1721	 54.90	0	1720482..1720685	-	67	163843998	-	BSUIS_A1816	-	hypothetical protein
1722	 60.14	0	1720715..1721557	-	280	163843999	vdlC	BSUIS_A1817	-	short chain dehydrogenase
1723	 56.91	0	1721715..1722575	+	286	163844000	yihY	BSUIS_A1818	-	YihY family protein
1724	 61.32	+1	1722593..1723078	+	161	163844001	-	BSUIS_A1819	-	hypothetical protein
1725	 58.86	0	1723086..1723802	-	238	163844002	-	BSUIS_A1820	-	redoxin domain-containing protein
1726	 59.60	0	1723856..1725256	+	466	163844003	argH	BSUIS_A1821	-	argininosuccinate lyase
1727	 58.20	0	1725361..1725549	+	62	163844004	-	BSUIS_A1822	-	hypothetical protein
1728	 61.06	0	1725577..1726842	+	421	163844005	lysA	BSUIS_A1823	-	diaminopimelate decarboxylase
1729	 61.11	0	1726941..1729586	+	881	163844006	-	BSUIS_A1824	-	hypothetical protein
1730	 55.68	0	1729626..1730162	-	178	163844007	hpt	BSUIS_A1825	-	hypoxanthine phosphoribosyltransferase
1731	 62.82	+1	1730311..1731090	+	259	163844008	-	BSUIS_A1826	-	ATP synthase subunits region ORF 4
1732	 59.26	0	1731235..1732341	+	368	163844009	hisC	BSUIS_A1827	-	histidinol-phosphate aminotransferase
1733	 60.35	0	1732346..1733311	+	321	163844010	-	BSUIS_A1828	-	cyclohexadienyl dehydrogenase
1734	 57.65	0	1733280..1734299	-	339	163844011	-	BSUIS_A1829	-	hypothetical protein
1735	 49.02	-1	1734319..1734522	-	67	163844012	-	BSUIS_A1830	-	hypothetical protein
1736	 57.93	0	1734511..1735071	+	186	163844013	-	BSUIS_A1831	-	cation transport regulator-like protein 1
1737	 53.26	0	1735404..1735694	+	96	163844014	-	BSUIS_A1833	-	protein of unknown function YGGT
1738	 55.18	0	1735865..1736395	-	176	163844015	ppa	BSUIS_A1834	-	inorganic pyrophosphatase
1739	 58.62	0	1736548..1737330	-	260	163844016	-	BSUIS_A1835	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1740	 56.37	0	1737509..1738042	-	177	163844017	-	BSUIS_A1836	-	hypothetical protein
1741	 60.78	0	1738408..1739409	-	333	163844018	-	BSUIS_A1837	-	hypothetical protein
1742	 60.15	0	1739402..1740061	-	219	163844019	ftsE	BSUIS_A1838	-	cell division ATP-binding protein FtsE
1743	 53.11	0	1740066..1740242	-	58	163844020	-	BSUIS_A1839	-	hypothetical protein
1744	 56.29	0	1740419..1740736	+	105	163844021	-	BSUIS_A1840	-	hypothetical protein
1745	 57.84	0	1740773..1740874	-	33	163844022	-	BSUIS_A1841	-	hypothetical protein
1746	 58.37	0	1741120..1741806	+	228	163844023	-	BSUIS_A1842	-	aquaporin Z
1747	 55.03	0	1742187..1742882	+	231	163844024	-	BSUIS_A1843	-	outer membrane lipoprotein carrier protein LolA
1748	 58.24	0	1742985..1743791	+	268	163844025	-	BSUIS_A1844	-	exodeoxyribonuclease III (xth)
1749	 61.69	+1	1743797..1744258	-	153	163844026	-	BSUIS_A1845	-	cAMP-dependent protein kinase regulatory subunit
1750	 55.85	0	1744293..1744976	-	227	163844027	pmrA	BSUIS_A1846	-	transcriptional regulatory protein basR/pmrA
1751	 61.17	0	1745184..1745729	+	181	163844028	-	BSUIS_A1847	-	hypothetical protein
1752	 44.67	-2	1745790..1746089	+	99	163844029	-	BSUIS_A1848	-	hypothetical protein
1753	 45.95	-2	1746118..1747647	-	509	163844030	-	BSUIS_A1849	-	hypothetical protein
1754	 43.15	-2	1747644..1748723	-	359	163844031	-	BSUIS_A1850	-	hypothetical protein
1755	 46.15	-2	1749050..1749439	+	129	163844032	-	BSUIS_A1851	-	hypothetical protein
1756	 43.42	-2	1749526..1751082	-	518	163844033	-	BSUIS_A1852	-	glycoprotein X precursor
1757	 58.78	0	1756178..1756849	-	223	163844034	-	BSUIS_A1855	-	hypothetical protein
1758	 59.52	0	1756929..1757222	-	97	163844035	rpmB	BSUIS_A1856	-	50S ribosomal protein L28
1759	 55.02	0	1757584..1758399	+	271	163844036	-	BSUIS_A1857	-	hypothetical protein
1760	 58.87	0	1758511..1758933	-	140	163844037	-	BSUIS_A1858	-	heavy metal-dependent transcription regulator 1
1761	 60.78	0	1759022..1761466	+	814	163844038	-	BSUIS_A1859	-	heavy metal translocating P-type ATPase
1762	 45.73	-2	1761873..1762622	+	249	163844039	-	BSUIS_A1860	-	hypothetical protein
1763	 41.25	-2	1762649..1763734	+	361	163844040	-	BSUIS_A1861	-	hypothetical protein
1764	 61.57	+1	1763907..1765808	-	633	163844041	cobT	BSUIS_A1862	-	cobaltochelatase, CobT subunit
1765	 57.85	0	1765916..1766902	-	328	163844042	cobS	BSUIS_A1863	-	cobaltochelatase, CobS subunit
1766	 63.64	+1	1766981..1767211	+	76	163844043	-	BSUIS_A1864	-	hypothetical protein
1767	 56.98	0	1767189..1767818	-	209	163844044	-	BSUIS_A1865	-	hypothetical protein
1768	 49.49	-1	1767815..1768012	-	65	163844045	-	BSUIS_A1866	-	hypothetical protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.