IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
121	 59.45	0	135275..138211	+	978	163842398	polA	BSUIS_A0128	-	DNA polymerase I
122	 60.07	0	138353..140233	+	626	163842399	ydbR	BSUIS_A0129	-	DEAD-box ATP-dependent RNA helicase ydbR
123	 59.79	0	140329..142770	-	813	163842400	gyrB	BSUIS_A0130	-	DNA gyrase subunit B
124	 50.00	-1	142821..142988	-	55	163842401	-	BSUIS_A0131	-	hypothetical protein
125	 64.54	+1	143410..145431	+	673	163842402	hrpB	BSUIS_A0132	-	ATP-dependent helicase HrpB
126	 60.94	0	145526..146818	+	430	163842403	regB	BSUIS_A0133	-	sensor histidine kinase regB
127	 58.54	0	146888..147256	+	122	163842404	-	BSUIS_A0134	-	transposase for insertion sequence element IS6501
128	 58.01	0	146910..147221	+	103	163842405	-	BSUIS_A0135	-	IS711, transposase orfA
129	 50.13	-1	147253..147645	+	130	163842406	-	BSUIS_A0136	-	transposase for insertion sequence element IS6501
130	 51.03	-1	147711..148049	+	112	163842407	-	BSUIS_A0137	-	hypothetical protein
131	 60.46	0	148245..148808	+	187	163842408	regA	BSUIS_A0138	-	photosynthetic apparatus regulatory protein regA
132	 63.70	+1	148814..149116	-	100	163842409	-	BSUIS_A0139	-	hypothetical protein
133	 57.33	0	149578..150198	+	206	163842410	-	BSUIS_A0140	-	ErfK/YbiS/YcfS/YnhG family protein
134	 59.69	0	150288..150860	-	190	163842411	-	BSUIS_A0141	-	HIRA-interacting protein 5
135	 60.93	0	150969..151508	-	179	163842412	-	BSUIS_A0142	-	UspA domain-containing protein
136	 59.41	0	151515..152672	-	385	163842413	trpS	BSUIS_A0143	-	tryptophanyl-tRNA synthetase
137	 59.87	0	152679..154268	-	529	163842414	mviN	BSUIS_A0144	-	integral membrane protein MviN
138	 58.54	0	154282..157086	-	934	163842415	glnD	BSUIS_A0145	-	PII uridylyl-transferase
139	 45.83	-2	157152..157247	+	31	163842416	-	BSUIS_A0146	-	hypothetical protein
140	 60.48	0	159679..162411	+	910	163842417	mutS	BSUIS_A0148	-	DNA mismatch repair protein
141	 58.39	0	162717..163610	-	297	163842418	-	BSUIS_A0149	-	hypothetical protein
142	 52.80	0	163885..164367	-	160	163842419	lspA	BSUIS_A0150	-	signal peptidase II
143	 60.18	0	164369..165262	-	297	163842420	-	BSUIS_A0151	-	tRNA/rRNA methyltransferase (SpoU)
144	 61.08	0	165259..166404	-	381	163842421	-	BSUIS_A0152	-	hypothetical protein
145	 58.95	0	166517..166840	-	107	163842422	-	BSUIS_A0153	-	hypothetical protein
146	 57.19	0	166850..167134	-	94	163842423	ihfB	BSUIS_A0154	-	integration host factor subunit beta
147	 60.16	0	167181..168164	-	327	163842424	sppA	BSUIS_A0155	-	signal peptide peptidase SppA, 36K type
148	 56.29	0	168626..169348	+	240	163842425	-	BSUIS_A0156	-	hypothetical protein
149	 61.14	0	169671..170285	+	204	163842426	-	BSUIS_A0157	-	hypothetical protein
150	 59.83	0	170297..171130	+	277	163842427	-	BSUIS_A0158	-	ABC transporter ATP-binding protein
151	 57.75	0	171426..172928	+	500	163842428	rpoN	BSUIS_A0159	-	RNA polymerase factor sigma-54
152	 46.99	-2	173077..173442	-	121	163842429	-	BSUIS_A0160	-	hypothetical protein
153	 58.92	0	173678..174271	+	197	163842430	yfiA	BSUIS_A0161	-	ribosomal subunit interface protein
154	 58.49	0	174374..174838	+	154	163842431	ptsN	BSUIS_A0162	-	PTS IIA-like nitrogen-regulatory protein PtsN
155	 58.54	0	174919..175164	-	81	163842432	-	BSUIS_A0163	-	hypothetical protein
156	 56.50	0	175270..175692	-	140	163842433	hspD	BSUIS_A0164	-	small heat shock protein hspD
157	 49.25	-1	175783..175983	-	66	163842434	-	BSUIS_A0165	-	hypothetical protein
158	 60.51	0	176567..177313	+	248	163842435	nth	BSUIS_A0167	-	endonuclease III
159	 58.40	0	177354..178067	-	237	163842436	-	BSUIS_A0168	-	CysZ-like protein
160	 59.00	0	178064..178324	-	86	163842437	-	BSUIS_A0169	-	hypothetical protein
161	 59.82	0	178327..179319	+	330	163842438	-	BSUIS_A0170	-	fructokinase-2
162	 59.97	0	179338..179994	-	218	163842439	-	BSUIS_A0171	-	hypothetical protein
163	 59.31	0	180127..180819	-	230	163842440	grpE	BSUIS_A0172	-	protein grpE
164	 59.85	0	180925..181995	-	356	163842441	hrcA	BSUIS_A0173	-	heat-inducible transcription repressor
165	 62.76	+1	182217..182933	+	238	163842442	rph	BSUIS_A0174	-	ribonuclease PH
166	 57.78	0	183107..183511	+	134	163842443	-	BSUIS_A0175	-	glyoxalase/bleomycin resistance protein/dioxygenase
167	 59.58	0	183514..184176	+	220	163842444	rdgB	BSUIS_A0176	-	putative deoxyribonucleotide triphosphate pyrophosphatase
168	 60.49	0	184173..185387	+	404	163842445	-	BSUIS_A0177	-	coproporphyrinogen III oxidase
169	 62.06	+1	185399..186310	+	303	163842446	-	BSUIS_A0178	-	hypothetical protein
170	 61.68	+1	186307..186687	+	126	163842447	-	BSUIS_A0179	-	hypothetical protein
171	 64.01	+1	186913..188340	+	475	163842448	cobA	BSUIS_A0180	-	uroporphyrin-III C-methyltransferase
172	 62.38	+1	188358..188660	+	100	163842449	-	BSUIS_A0181	-	hypothetical protein
173	 57.51	0	188681..190351	+	556	163842450	-	BSUIS_A0182	-	sulfite reductase (ferredoxin)
174	 63.37	+1	190341..191099	+	252	163842451	cysH	BSUIS_A0183	-	phosphoadenosine phosphosulfate reductase
175	 59.05	0	191152..191676	+	174	163842452	-	BSUIS_A0184	-	hypothetical protein
176	 53.40	0	191744..192037	+	97	163842453	-	BSUIS_A0185	-	stress responsive alpha-beta barrel domain-containing protein
177	 59.24	0	192038..192616	-	192	163842454	-	BSUIS_A0186	-	methylated-DNA-[protein]-cysteine S-methyltransferase
178	 56.91	0	192874..193119	+	81	163842455	-	BSUIS_A0187	-	hypothetical protein
179	 61.28	+1	193172..193561	-	129	163842456	-	BSUIS_A0188	-	BA14K family protein
180	 59.27	0	193875..197672	+	1265	163842457	metH	BSUIS_A0189	-	B12-dependent methionine synthase
181	 48.81	-1	197636..197803	-	55	163842458	-	BSUIS_A0190	-	hypothetical protein
182	 51.41	-1	197993..198700	+	235	163842459	solR	BSUIS_A0191	-	transcriptional activator protein solR
183	 59.52	0	198815..200185	+	456	163842460	-	BSUIS_A0192	-	aminotransferase
184	 55.70	0	200571..201473	+	300	163842461	cysD	BSUIS_A0193	-	sulfate adenylyltransferase subunit 2
185	 58.19	0	201473..203407	+	644	163842462	cysN	BSUIS_A0194	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
186	 61.58	+1	203410..204255	+	281	163842463	cysQ	BSUIS_A0195	-	3'(2'),5'-bisphosphate nucleotidase
187	 57.18	0	205520..206257	+	245	163842464	moaR	BSUIS_A0198	-	monoamine regulon transcriptional regulator
188	 34.09	-2	206232..206363	+	43	163842465	-	BSUIS_A0199	-	hypothetical protein
189	 58.21	0	206585..207376	+	263	163842466	-	BSUIS_A0200	-	DeoR family transcriptional regulator
190	 60.19	0	207458..208969	+	503	163842467	glpD	BSUIS_A0201	-	glycerol-3-phosphate dehydrogenase
191	 64.71	+1	209188..210156	+	322	163842468	-	BSUIS_A0202	-	Fis family transcriptional regulator
192	 58.10	0	210305..211822	+	505	163842469	thcA	BSUIS_A0203	-	EPTC-inducible aldehyde dehydrogenase
193	 59.03	0	212303..213337	+	344	163842470	adhT	BSUIS_A0204	-	alcohol dehydrogenase
194	 60.70	0	213359..213760	+	133	163842471	-	BSUIS_A0205	-	hypothetical protein
195	 59.82	0	213822..214844	+	340	163842472	-	BSUIS_A0206	-	alanine racemase
196	 61.64	+1	214936..216627	-	563	163842473	-	BSUIS_A0207	-	ABC transporter related
197	 41.82	-2	216878..217042	-	54	163842474	-	BSUIS_A0208	-	hypothetical protein
198	 59.07	0	217248..218681	+	477	163842475	aldHT	BSUIS_A0209	-	aldehyde dehydrogenase
199	 63.32	+1	218726..219502	-	258	163842476	-	BSUIS_A0210	-	binding-protein-dependent transport systems inner membrane component
200	 58.94	0	219499..220197	-	232	163842477	-	BSUIS_A0211	-	TenA family transcription regulator
201	 57.28	0	220194..221162	-	322	163842478	-	BSUIS_A0212	-	NMT1/THI5-like domain-containing protein
202	 61.11	0	221186..221797	-	203	163842479	thiE	BSUIS_A0213	-	thiamine-phosphate pyrophosphorylase
203	 62.78	+1	221794..222564	-	256	163842480	thiG	BSUIS_A0214	-	thiazole synthase
204	 59.09	0	222566..222763	-	65	163842481	thiS	BSUIS_A0215	-	thiamine biosynthesis protein ThiS
205	 63.28	+1	222760..223764	-	334	163842482	thiO	BSUIS_A0216	-	glycine oxidase ThiO
206	 62.79	+1	223764..224639	-	291	163842483	thiD	BSUIS_A0217	-	phosphomethylpyrimidine kinase
207	 57.91	0	225068..227179	+	703	163842484	-	BSUIS_A0219	-	diguanylate cyclase
208	 62.15	+1	227278..229758	+	826	163842485	-	BSUIS_A0220	-	heavy metal translocating P-type ATPase
209	 58.67	0	229738..230187	-	149	163842486	cueR	BSUIS_A0221	-	Cu(I)-responsive transcriptional regulator
210	 61.18	0	230293..231039	-	248	163842487	-	BSUIS_A0222	-	binding-protein-dependent transport systems inner membrane component
211	 63.58	+1	231036..231974	-	312	163842488	-	BSUIS_A0223	-	ABC transporter related
212	 62.36	+1	231971..233131	-	386	163842489	-	BSUIS_A0224	-	binding-protein-dependent transport systems inner membrane component
213	 55.90	0	233204..234271	-	355	163842490	-	BSUIS_A0225	-	substrate-binding region of ABC-type glycine betaine transport system
214	 45.80	-2	234304..234969	-	221	163842491	-	BSUIS_A0226	-	hypothetical protein
215	 60.51	0	235259..236524	-	421	163842492	gdhA	BSUIS_A0227	-	glutamate dehydrogenase
216	 51.79	-1	236715..236882	+	55	163842493	-	BSUIS_A0228	-	hypothetical protein
217	 59.89	0	236851..238104	+	417	163842494	-	BSUIS_A0229	-	sarcosine oxidase beta subunit family protein
218	 58.82	0	238123..238428	+	101	163842495	-	BSUIS_A0230	-	sarcosine oxidase delta subunit family protein
219	 57.66	0	241437..241991	+	184	163842496	-	BSUIS_A0232	-	sarcosine oxidase gamma subunit
220	 60.38	0	242949..243743	-	264	163842497	-	BSUIS_A0234	-	regulatory protein IclR
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.