IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1629	 51.11	-1	1631503..1631637	-	44	163843906	-	BSUIS_A1721	-	hypothetical protein
1630	 55.42	0	1632850..1633329	-	159	163843907	-	BSUIS_A1723	-	hypothetical protein
1631	 61.96	+1	1633745..1635316	-	523	163843908	-	BSUIS_A1724	-	HemY domain-containing protein
1632	 62.09	+1	1635329..1636705	-	458	163843909	-	BSUIS_A1725	-	hypothetical protein
1633	 58.76	0	1636788..1637495	-	235	163843910	-	BSUIS_A1726	-	uroporphyrinogen-III synthase
1634	 62.43	+1	1637519..1638463	-	314	163843911	hemC	BSUIS_A1727	-	porphobilinogen deaminase
1635	 63.52	+1	1638582..1639661	+	359	163843912	-	BSUIS_A1728	-	O-sialoglycoprotein endopeptidase
1636	 62.49	+1	1639658..1640638	+	326	163843913	gpsA	BSUIS_A1729	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
1637	 60.48	0	1640640..1640930	+	96	163843914	-	BSUIS_A1730	-	YciI-like protein
1638	 58.04	0	1640943..1641371	+	142	163843915	-	BSUIS_A1731	-	hypothetical protein
1639	 58.87	0	1641323..1642027	+	234	163843916	prmA	BSUIS_A1732	-	ribosomal protein L11 methyltransferase
1640	 61.42	+1	1642073..1642930	-	285	163843917	-	BSUIS_A1733	-	hypothetical protein
1641	 62.12	+1	1643046..1644539	+	497	163843918	-	BSUIS_A1734	-	GntR family transcriptional regulator
1642	 61.25	0	1644601..1647165	-	854	163843919	ftsK	BSUIS_A1735	-	DNA translocase ftsK
1643	 59.06	0	1647375..1648676	-	433	163843920	amt	BSUIS_A1736	-	ammonium transporter
1644	 53.46	0	1648650..1648808	+	52	163843921	-	BSUIS_A1737	-	hypothetical protein
1645	 62.57	+1	1650020..1651264	+	414	163843922	-	BSUIS_A1739	-	2-octaprenyl-6-methoxyphenyl hydroxylase
1646	 55.91	0	1651350..1651721	-	123	163843923	-	BSUIS_A1740	-	glyoxalase/bleomycin resistance protein/dioxygenase
1647	 56.92	0	1651968..1652747	-	259	163843924	-	BSUIS_A1741	-	succinate dehydrogenase iron-sulfur subunit
1648	 61.78	+1	1652763..1654604	-	613	163843925	sdhA	BSUIS_A1742	-	succinate dehydrogenase flavoprotein subunit
1649	 54.29	0	1654612..1655007	-	131	163843926	sdhD	BSUIS_A1743	-	succinate dehydrogenase, hydrophobic membrane anchor protein
1650	 59.40	0	1655021..1655419	-	132	163843927	sdhC	BSUIS_A1744	-	succinate dehydrogenase, cytochrome b556 subunit
1651	 56.64	0	1655764..1656222	-	152	163843928	-	BSUIS_A1745	-	hypothetical protein
1652	 60.28	0	1656479..1657888	-	469	163843929	leuC	BSUIS_A1746	-	isopropylmalate isomerase large subunit
1653	 58.45	0	1658099..1658536	-	145	163843930	rplS	BSUIS_A1747	-	50S ribosomal protein L19
1654	 56.28	0	1658828..1660291	+	487	163843931	-	BSUIS_A1748	-	hypothetical protein
1655	 59.92	0	1660444..1660695	-	83	163843932	-	BSUIS_A1749	-	hypothetical protein
1656	 59.12	0	1660692..1661102	-	136	163843933	-	BSUIS_A1750	-	hypothetical protein
1657	 59.23	0	1661095..1661457	-	120	163843934	-	BSUIS_A1751	-	hypothetical protein
1658	 55.56	0	1661454..1661777	-	107	163843935	-	BSUIS_A1752	-	NIPSNAP family protein
1659	 59.01	0	1661848..1662513	+	221	163843936	-	BSUIS_A1753	-	ArsR family transcriptional regulator
1660	 61.50	+1	1662648..1663382	-	244	163843937	trmD	BSUIS_A1754	-	tRNA (guanine-N(1)-)-methyltransferase
1661	 57.89	0	1663379..1663948	-	189	163843938	rimM	BSUIS_A1755	-	16S rRNA-processing protein
1662	 62.76	+1	1664172..1665119	+	315	163843939	xerC	BSUIS_A1756	-	site-specific tyrosine recombinase XerC
1663	 56.59	0	1665173..1666174	+	333	163843940	-	BSUIS_A1757	-	GumN family protein
1664	 58.33	0	1666378..1667781	-	467	163843941	lpdA	BSUIS_A1758	-	dihydrolipoamide dehydrogenase
1665	 53.22	0	1667950..1668492	-	180	163843942	-	BSUIS_A1759	-	hypothetical protein
1666	 55.56	0	1668563..1669201	-	212	163843943	-	BSUIS_A1760	-	lysine exporter protein LysE/YggA
1667	 59.90	0	1669243..1669656	-	137	163843944	-	BSUIS_A1761	-	hypothetical protein
1668	 61.45	+1	1669666..1670892	-	408	163843945	sucB	BSUIS_A1762	-	dihydrolipoamide acetyltransferase
1669	 59.30	0	1670954..1673968	-	1004	163843946	sucA	BSUIS_A1763	-	alpha-ketoglutarate decarboxylase
1670	 56.67	0	1674105..1674254	+	49	163843947	-	BSUIS_A1764	-	hypothetical protein
1671	 60.69	0	1674244..1675146	-	300	163843948	-	BSUIS_A1765	-	succinyl-CoA synthetase subunit alpha
1672	 57.64	0	1675150..1676346	-	398	163843949	-	BSUIS_A1766	-	succinyl-CoA synthetase subunit beta
1673	 61.37	+1	1676453..1677415	-	320	163843950	mdh	BSUIS_A1767	-	malate dehydrogenase
1674	 52.26	-1	1677535..1677777	-	80	163843951	-	BSUIS_A1768	-	hypothetical protein
1675	 57.65	0	1677883..1679046	-	387	163843952	-	BSUIS_A1769	-	AFG1 family ATPase
1676	 63.48	+1	1679166..1679699	-	177	163843953	-	BSUIS_A1770	-	hypothetical protein
1677	 50.00	-1	1679829..1680032	-	67	163843954	-	BSUIS_A1771	-	hypothetical protein
1678	 63.16	+1	1680063..1680974	+	303	163843955	dapF	BSUIS_A1772	-	diaminopimelate epimerase
1679	 60.05	0	1680974..1682257	+	427	163843956	-	BSUIS_A1773	-	MiaB-like tRNA modifying enzyme
1680	 60.73	0	1682279..1683676	+	465	163843957	ftsY	BSUIS_A1774	-	signal recognition particle-docking protein FtsY
1681	 56.11	0	1683676..1684338	+	220	163843958	ispZ	BSUIS_A1775	-	intracellular septation protein A
1682	 58.24	0	1684362..1685144	+	260	163843959	gloB	BSUIS_A1776	-	hydroxyacylglutathione hydrolase
1683	 54.47	0	1685191..1685682	+	163	163843960	-	BSUIS_A1777	-	hypothetical protein
1684	 56.21	0	1685747..1686052	-	101	163843961	-	BSUIS_A1778	-	hypothetical protein
1685	 59.71	0	1686164..1686580	-	138	163843962	-	BSUIS_A1779	-	mutator MutT protein
1686	 59.72	0	1686577..1687368	-	263	163843963	-	BSUIS_A1780	-	GCN5-related N-acetyltransferase
1687	 60.87	0	1687426..1688667	-	413	163843964	argJ	BSUIS_A1781	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1688	 52.78	0	1688901..1689044	-	47	163843965	-	BSUIS_A1782	-	hypothetical protein
1689	 57.73	0	1689105..1690100	-	331	163843966	plp	BSUIS_A1783	-	parvulin-like PPIase precursor
1690	 47.62	-2	1690228..1690395	-	55	163843967	-	BSUIS_A1784	-	hypothetical protein
1691	 58.65	0	1690439..1693159	+	906	163843968	secA	BSUIS_A1785	-	preprotein translocase subunit SecA
1692	 44.68	-2	1693187..1693327	+	46	163843969	-	BSUIS_A1786	-	hypothetical protein
1693	 58.97	0	1693936..1695222	+	428	163843970	-	BSUIS_A1787	-	hypothetical protein
1694	 55.54	0	1695391..1697025	+	544	163843971	-	BSUIS_A1788	-	sulfatase
1695	 46.08	-2	1697379..1697480	+	33	163843972	-	BSUIS_A1789	-	hypothetical protein
1696	 59.04	0	1698194..1699177	-	327	163843973	oxyR	BSUIS_A1791	-	hydrogen peroxide-inducible genes activator
1697	 42.47	-2	1699217..1699402	-	61	163843974	-	BSUIS_A1792	-	hypothetical protein
1698	 58.04	0	1699468..1700313	+	281	163843975	patH	BSUIS_A1793	-	amino acid ABC transporter
1699	 58.51	0	1700400..1701098	+	232	163843976	-	BSUIS_A1794	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1700	 57.95	0	1701103..1701825	+	240	163843977	-	BSUIS_A1795	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1701	 59.80	0	1701822..1702637	+	271	163843978	occP	BSUIS_A1796	-	octopine permease ATP-binding protein P
1702	 60.45	0	1702658..1703671	+	337	163843979	pah	BSUIS_A1797	-	proclavaminate amidinohydrolase
1703	 58.61	0	1703680..1705131	+	483	163843980	aspA	BSUIS_A1798	-	aspartate ammonia-lyase
1704	 57.54	0	1705115..1705870	+	251	163843981	bztD	BSUIS_A1799	-	glutamate/glutamine/aspartate/asparagine transport ATP-binding protein bztD
1705	 58.76	0	1705879..1706877	+	332	163843982	ansA	BSUIS_A1800	-	L-asparaginase
1706	 51.75	-1	1707014..1707697	-	227	163843983	-	BSUIS_A1801	-	GntR family transcriptional regulator
1707	 56.16	0	1707721..1708710	-	329	163843984	ansA	BSUIS_A1802	-	L-asparaginase
1708	 54.20	0	1708788..1710095	+	435	163843985	-	BSUIS_A1803	-	major facilitator transporter
1709	 56.21	0	1710582..1710734	-	50	163843986	-	BSUIS_A1804	-	hypothetical protein
1710	 58.88	0	1710781..1712064	-	427	163843987	mdeA	BSUIS_A1805	-	methionine gamma-lyase
1711	 57.78	0	1712244..1712693	-	149	163843988	-	BSUIS_A1806	-	UspA domain-containing protein
1712	 57.86	0	1712913..1713923	+	336	163843989	cysK	BSUIS_A1807	-	cysteine synthase A
1713	 50.60	-1	1714005..1714253	-	82	163843990	-	BSUIS_A1808	-	hypothetical protein
1714	 57.19	0	1714413..1715288	-	291	163843991	mmgB	BSUIS_A1809	-	3-hydroxybutyryl-CoA dehydrogenase
1715	 60.54	0	1715774..1716703	-	309	163843992	-	BSUIS_A1810	-	electron transfer flavoprotein, alpha subunit
1716	 58.23	0	1716856..1717602	-	248	163843993	etfB	BSUIS_A1811	-	electron transfer flavoprotein subunit beta
1717	 59.66	0	1717938..1718636	+	232	163843994	-	BSUIS_A1812	-	exsB protein
1718	 56.01	0	1718636..1719001	+	121	163843995	-	BSUIS_A1813	-	hypothetical protein
1719	 58.07	0	1719001..1719756	+	251	163843996	-	BSUIS_A1814	-	radical SAM domain-containing protein
1720	 61.39	+1	1719893..1720480	-	195	163843997	-	BSUIS_A1815	-	ATP:cob(I)alamin adenosyltransferase
1721	 54.90	0	1720482..1720685	-	67	163843998	-	BSUIS_A1816	-	hypothetical protein
1722	 60.14	0	1720715..1721557	-	280	163843999	vdlC	BSUIS_A1817	-	short chain dehydrogenase
1723	 56.91	0	1721715..1722575	+	286	163844000	yihY	BSUIS_A1818	-	YihY family protein
1724	 61.32	+1	1722593..1723078	+	161	163844001	-	BSUIS_A1819	-	hypothetical protein
1725	 58.86	0	1723086..1723802	-	238	163844002	-	BSUIS_A1820	-	redoxin domain-containing protein
1726	 59.60	0	1723856..1725256	+	466	163844003	argH	BSUIS_A1821	-	argininosuccinate lyase
1727	 58.20	0	1725361..1725549	+	62	163844004	-	BSUIS_A1822	-	hypothetical protein
1728	 61.06	0	1725577..1726842	+	421	163844005	lysA	BSUIS_A1823	-	diaminopimelate decarboxylase
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.