IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1581	 56.25	0	1577310..1578221	-	303	163843858	-	BSUIS_A1666	-	binding-protein-dependent transport systems inner membrane component
1582	 57.55	0	1578237..1579388	-	383	163843859	-	BSUIS_A1667	-	polyamine ABC transporter, ATP-binding protein
1583	 55.34	0	1579630..1580733	-	367	163843860	-	BSUIS_A1668	-	hypothetical protein
1584	 62.63	+1	1580955..1582367	-	470	163843861	-	BSUIS_A1669	-	hypothetical protein
1585	 60.23	0	1582616..1583905	+	429	163843862	aceA	BSUIS_A1670	-	isocitrate lyase
1586	 55.70	0	1583940..1584176	+	78	163843863	-	BSUIS_A1671	-	hypothetical protein
1587	 55.04	0	1584173..1584301	+	42	163843864	-	BSUIS_A1672	-	hypothetical protein
1588	 55.04	0	1584298..1584426	+	42	163843865	-	BSUIS_A1673	-	hypothetical protein
1589	 54.49	0	1584410..1584565	-	51	163843866	-	BSUIS_A1674	-	hypothetical protein
1590	 59.64	0	1585388..1586155	+	255	163843867	-	BSUIS_A1676	-	7-alpha-hydroxysteroid dehydrogenase
1591	 56.98	0	1586221..1587015	+	264	163843868	-	BSUIS_A1677	-	hypothetical protein
1592	 56.10	0	1587022..1588782	+	586	163843869	-	BSUIS_A1678	-	hypothetical protein
1593	 57.72	0	1588798..1589412	+	204	163843870	-	BSUIS_A1679	-	hypothetical protein
1594	 54.20	0	1589692..1590477	+	261	163843871	ropB	BSUIS_A1680	-	22 kDa outer membrane protein precursor
1595	 53.51	0	1590614..1592164	-	516	163843872	-	BSUIS_A1681	-	patatin-like phospholipase domain-containing protein
1596	 47.06	-2	1592465..1592566	-	33	163843873	-	BSUIS_A1682	-	hypothetical protein
1597	 49.29	-1	1592717..1592998	+	93	163843874	-	BSUIS_A1683	-	hypothetical protein
1598	 55.11	0	1593275..1594018	-	247	163843875	-	BSUIS_A1684	-	dihydroxyacetone kinase, L subunit
1599	 56.12	0	1593988..1596072	-	694	163843876	-	BSUIS_A1685	-	3,4-dihydroxy-2-butanone kinase
1600	 57.53	0	1596231..1596887	-	218	163843877	-	BSUIS_A1686	-	dihydroxyacetone kinase, L subunit
1601	 56.66	0	1596884..1597912	-	342	163843878	-	BSUIS_A1687	-	3,4-dihydroxy-2-butanone kinase
1602	 55.81	0	1597909..1598682	-	257	163843879	polS	BSUIS_A1688	-	short chain dehydrogenase
1603	 55.35	0	1598771..1599760	-	329	163843880	mocB	BSUIS_A1689	-	rhizopine-binding protein precursor
1604	 57.21	0	1599936..1600940	-	334	163843881	-	BSUIS_A1690	-	hypothetical protein
1605	 55.85	0	1601036..1602514	-	492	163843882	-	BSUIS_A1691	-	ribose/galactose/methyl galactoside import ATP-binding protein 2
1606	 53.46	0	1602810..1603127	+	105	163843883	-	BSUIS_A1692	-	hypothetical protein
1607	 52.71	-1	1603257..1603385	-	42	163843884	-	BSUIS_A1693	-	hypothetical protein
1608	 56.56	0	1603484..1605145	+	553	163843885	betA	BSUIS_A1694	-	choline dehydrogenase
1609	 45.10	-2	1605795..1605947	+	50	163843886	-	BSUIS_A1697	-	hypothetical protein
1610	 42.80	-2	1608902..1609144	+	80	163843887	-	BSUIS_A1699	-	hypothetical protein
1611	 58.95	0	1612059..1614014	+	651	163843888	-	BSUIS_A1703	-	peptidase M23B
1612	 59.09	0	1614082..1615308	-	408	163843889	-	BSUIS_A1704	-	ATP synthase subunits region ORF 5
1613	 58.74	0	1615981..1618605	-	874	163843890	clpB	BSUIS_A1705	-	chaperone clpB
1614	 62.85	+1	1618804..1619562	-	252	163843891	-	BSUIS_A1706	-	hypothetical protein
1615	 50.55	-1	1619543..1619815	-	90	163843892	-	BSUIS_A1707	-	hypothetical protein
1616	 49.66	-1	1619877..1620023	+	48	163843893	-	BSUIS_A1708	-	hypothetical protein
1617	 58.00	0	1620007..1620894	-	295	163843894	-	BSUIS_A1709	-	HemK family methyltransferase
1618	 60.00	0	1620891..1621970	-	359	163843895	prfA	BSUIS_A1710	-	peptide chain release factor 1
1619	 60.46	0	1622167..1624437	-	756	163843896	ptsI	BSUIS_A1711	-	phosphoenolpyruvate-protein phosphotransferase
1620	 59.12	0	1624765..1626036	-	423	163843897	-	BSUIS_A1712	-	aspartate kinase
1621	 59.71	0	1626254..1627000	+	248	163843898	ubiG	BSUIS_A1713	-	3-demethylubiquinone-9 3-methyltransferase
1622	 59.17	0	1627006..1627899	-	297	163843899	-	BSUIS_A1714	-	hypothetical protein
1623	 56.57	0	1627927..1628352	-	141	163843900	-	BSUIS_A1715	-	hypothetical protein
1624	 60.00	0	1628358..1629212	-	284	163843901	-	BSUIS_A1716	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1625	 56.55	0	1629223..1629489	-	88	163843902	grxC	BSUIS_A1717	-	glutaredoxin 3
1626	 44.72	-2	1629473..1629595	+	40	163843903	-	BSUIS_A1718	-	hypothetical protein
1627	 61.98	+1	1629573..1630361	-	262	163843904	gntX	BSUIS_A1719	-	protein gntX
1628	 62.30	+1	1630544..1631437	+	297	163843905	bioC	BSUIS_A1720	-	biotin synthesis protein BioC
1629	 51.11	-1	1631503..1631637	-	44	163843906	-	BSUIS_A1721	-	hypothetical protein
1630	 55.42	0	1632850..1633329	-	159	163843907	-	BSUIS_A1723	-	hypothetical protein
1631	 61.96	+1	1633745..1635316	-	523	163843908	-	BSUIS_A1724	-	HemY domain-containing protein
1632	 62.09	+1	1635329..1636705	-	458	163843909	-	BSUIS_A1725	-	hypothetical protein
1633	 58.76	0	1636788..1637495	-	235	163843910	-	BSUIS_A1726	-	uroporphyrinogen-III synthase
1634	 62.43	+1	1637519..1638463	-	314	163843911	hemC	BSUIS_A1727	-	porphobilinogen deaminase
1635	 63.52	+1	1638582..1639661	+	359	163843912	-	BSUIS_A1728	-	O-sialoglycoprotein endopeptidase
1636	 62.49	+1	1639658..1640638	+	326	163843913	gpsA	BSUIS_A1729	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
1637	 60.48	0	1640640..1640930	+	96	163843914	-	BSUIS_A1730	-	YciI-like protein
1638	 58.04	0	1640943..1641371	+	142	163843915	-	BSUIS_A1731	-	hypothetical protein
1639	 58.87	0	1641323..1642027	+	234	163843916	prmA	BSUIS_A1732	-	ribosomal protein L11 methyltransferase
1640	 61.42	+1	1642073..1642930	-	285	163843917	-	BSUIS_A1733	-	hypothetical protein
1641	 62.12	+1	1643046..1644539	+	497	163843918	-	BSUIS_A1734	-	GntR family transcriptional regulator
1642	 61.25	0	1644601..1647165	-	854	163843919	ftsK	BSUIS_A1735	-	DNA translocase ftsK
1643	 59.06	0	1647375..1648676	-	433	163843920	amt	BSUIS_A1736	-	ammonium transporter
1644	 53.46	0	1648650..1648808	+	52	163843921	-	BSUIS_A1737	-	hypothetical protein
1645	 62.57	+1	1650020..1651264	+	414	163843922	-	BSUIS_A1739	-	2-octaprenyl-6-methoxyphenyl hydroxylase
1646	 55.91	0	1651350..1651721	-	123	163843923	-	BSUIS_A1740	-	glyoxalase/bleomycin resistance protein/dioxygenase
1647	 56.92	0	1651968..1652747	-	259	163843924	-	BSUIS_A1741	-	succinate dehydrogenase iron-sulfur subunit
1648	 61.78	+1	1652763..1654604	-	613	163843925	sdhA	BSUIS_A1742	-	succinate dehydrogenase flavoprotein subunit
1649	 54.29	0	1654612..1655007	-	131	163843926	sdhD	BSUIS_A1743	-	succinate dehydrogenase, hydrophobic membrane anchor protein
1650	 59.40	0	1655021..1655419	-	132	163843927	sdhC	BSUIS_A1744	-	succinate dehydrogenase, cytochrome b556 subunit
1651	 56.64	0	1655764..1656222	-	152	163843928	-	BSUIS_A1745	-	hypothetical protein
1652	 60.28	0	1656479..1657888	-	469	163843929	leuC	BSUIS_A1746	-	isopropylmalate isomerase large subunit
1653	 58.45	0	1658099..1658536	-	145	163843930	rplS	BSUIS_A1747	-	50S ribosomal protein L19
1654	 56.28	0	1658828..1660291	+	487	163843931	-	BSUIS_A1748	-	hypothetical protein
1655	 59.92	0	1660444..1660695	-	83	163843932	-	BSUIS_A1749	-	hypothetical protein
1656	 59.12	0	1660692..1661102	-	136	163843933	-	BSUIS_A1750	-	hypothetical protein
1657	 59.23	0	1661095..1661457	-	120	163843934	-	BSUIS_A1751	-	hypothetical protein
1658	 55.56	0	1661454..1661777	-	107	163843935	-	BSUIS_A1752	-	NIPSNAP family protein
1659	 59.01	0	1661848..1662513	+	221	163843936	-	BSUIS_A1753	-	ArsR family transcriptional regulator
1660	 61.50	+1	1662648..1663382	-	244	163843937	trmD	BSUIS_A1754	-	tRNA (guanine-N(1)-)-methyltransferase
1661	 57.89	0	1663379..1663948	-	189	163843938	rimM	BSUIS_A1755	-	16S rRNA-processing protein
1662	 62.76	+1	1664172..1665119	+	315	163843939	xerC	BSUIS_A1756	-	site-specific tyrosine recombinase XerC
1663	 56.59	0	1665173..1666174	+	333	163843940	-	BSUIS_A1757	-	GumN family protein
1664	 58.33	0	1666378..1667781	-	467	163843941	lpdA	BSUIS_A1758	-	dihydrolipoamide dehydrogenase
1665	 53.22	0	1667950..1668492	-	180	163843942	-	BSUIS_A1759	-	hypothetical protein
1666	 55.56	0	1668563..1669201	-	212	163843943	-	BSUIS_A1760	-	lysine exporter protein LysE/YggA
1667	 59.90	0	1669243..1669656	-	137	163843944	-	BSUIS_A1761	-	hypothetical protein
1668	 61.45	+1	1669666..1670892	-	408	163843945	sucB	BSUIS_A1762	-	dihydrolipoamide acetyltransferase
1669	 59.30	0	1670954..1673968	-	1004	163843946	sucA	BSUIS_A1763	-	alpha-ketoglutarate decarboxylase
1670	 56.67	0	1674105..1674254	+	49	163843947	-	BSUIS_A1764	-	hypothetical protein
1671	 60.69	0	1674244..1675146	-	300	163843948	-	BSUIS_A1765	-	succinyl-CoA synthetase subunit alpha
1672	 57.64	0	1675150..1676346	-	398	163843949	-	BSUIS_A1766	-	succinyl-CoA synthetase subunit beta
1673	 61.37	+1	1676453..1677415	-	320	163843950	mdh	BSUIS_A1767	-	malate dehydrogenase
1674	 52.26	-1	1677535..1677777	-	80	163843951	-	BSUIS_A1768	-	hypothetical protein
1675	 57.65	0	1677883..1679046	-	387	163843952	-	BSUIS_A1769	-	AFG1 family ATPase
1676	 63.48	+1	1679166..1679699	-	177	163843953	-	BSUIS_A1770	-	hypothetical protein
1677	 50.00	-1	1679829..1680032	-	67	163843954	-	BSUIS_A1771	-	hypothetical protein
1678	 63.16	+1	1680063..1680974	+	303	163843955	dapF	BSUIS_A1772	-	diaminopimelate epimerase
1679	 60.05	0	1680974..1682257	+	427	163843956	-	BSUIS_A1773	-	MiaB-like tRNA modifying enzyme
1680	 60.73	0	1682279..1683676	+	465	163843957	ftsY	BSUIS_A1774	-	signal recognition particle-docking protein FtsY
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.