IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1506	 51.77	-1	1497658..1497798	-	46	163843783	-	BSUIS_A1586	-	hypothetical protein
1507	 61.70	+1	1497825..1498670	+	281	163843784	lgt	BSUIS_A1587	-	prolipoprotein diacylglyceryl transferase
1508	 59.20	0	1498663..1499760	+	365	163843785	-	BSUIS_A1588	-	hypothetical protein
1509	 58.57	0	1499940..1500791	+	283	163843786	-	BSUIS_A1589	-	hypothetical protein
1510	 57.81	0	1500904..1502055	+	383	163843787	pepQ	BSUIS_A1590	-	Xaa-Pro dipeptidase
1511	 58.92	0	1502109..1502663	+	184	163843788	-	BSUIS_A1591	-	hypothetical protein
1512	 59.70	0	1503002..1503934	+	310	163843789	prs	BSUIS_A1592	-	ribose-phosphate pyrophosphokinase
1513	 62.84	+1	1504082..1505623	-	513	163843790	-	BSUIS_A1593	-	hypothetical protein
1514	 58.17	0	1506315..1506938	+	207	163843791	-	BSUIS_A1594	-	50S ribosomal protein L25/general stress protein Ctc
1515	 57.10	0	1506967..1507719	+	250	163843792	pth	BSUIS_A1595	-	peptidyl-tRNA hydrolase
1516	 59.33	0	1507807..1508910	+	367	163843793	ychF	BSUIS_A1596	-	translation-associated GTPase
1517	 57.49	0	1508972..1509472	+	166	163843794	-	BSUIS_A1597	-	dehydratase
1518	 57.76	0	1509469..1509951	+	160	163843795	-	BSUIS_A1598	-	dehydratase
1519	 56.33	0	1509993..1510553	-	186	163843796	apt	BSUIS_A1599	-	adenine phosphoribosyltransferase
1520	 57.43	0	1510861..1511748	-	295	163843797	petC	BSUIS_A1600	-	cytochrome c1 precursor
1521	 57.04	0	1511762..1513060	-	432	163843798	petB	BSUIS_A1601	-	cytochrome b
1522	 58.16	0	1513082..1513645	-	187	163843799	petA	BSUIS_A1602	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1523	 58.41	0	1513897..1515762	-	621	163843800	-	BSUIS_A1603	-	ABC transporter related
1524	 57.62	0	1515919..1517775	-	618	163843801	-	BSUIS_A1604	-	ABC transporter related
1525	 58.54	0	1517932..1518411	+	159	163843802	-	BSUIS_A1605	-	tRNA/rRNA methyltransferase (SpoU)
1526	 62.07	+1	1519669..1519929	-	86	163843803	-	BSUIS_A1607	-	hypothetical protein
1527	 57.57	0	1520223..1521134	+	303	163843804	-	BSUIS_A1608	-	coproporphyrinogen III oxidase
1528	 61.01	0	1521168..1521662	-	164	163843805	-	BSUIS_A1609	-	GCN5-related N-acetyltransferase
1529	 59.28	0	1522695..1523966	-	423	163843806	cca	BSUIS_A1611	-	CCA-adding enzyme
1530	 61.22	0	1523963..1524586	-	207	163843807	-	BSUIS_A1612	-	NUDIX hydrolase
1531	 60.06	0	1524583..1525248	-	221	163843808	-	BSUIS_A1613	-	hypothetical protein
1532	 61.90	+1	1525368..1526375	+	335	163843809	-	BSUIS_A1614	-	hypothetical protein
1533	 63.34	+1	1526375..1527307	+	310	163843810	-	BSUIS_A1615	-	hypothetical protein
1534	 61.65	+1	1527304..1530153	+	949	163843811	-	BSUIS_A1616	-	hypothetical protein
1535	 60.55	0	1530217..1532292	+	691	163843812	-	BSUIS_A1617	-	hypothetical protein
1536	 63.12	+1	1532360..1532866	-	168	163843813	-	BSUIS_A1618	-	GCN5-related N-acetyltransferase
1537	 56.91	0	1533170..1534153	+	327	163843814	-	BSUIS_A1619	-	glutathione S-transferase
1538	 56.29	0	1534301..1534984	+	227	163843815	alkL	BSUIS_A1620	-	Outer membrane protein alkL precursor
1539	 53.73	0	1535018..1535473	-	151	163843816	-	BSUIS_A1621	-	NUDIX hydrolase
1540	 59.91	0	1535582..1536484	+	300	163843817	-	BSUIS_A1622	-	metallophosphoesterase
1541	 57.47	0	1536685..1538412	-	575	163843818	leuA	BSUIS_A1623	-	2-isopropylmalate synthase
1542	 58.49	0	1538544..1538702	-	52	163843819	-	BSUIS_A1624	-	hypothetical protein
1543	 58.53	0	1538717..1539625	-	302	163843820	-	BSUIS_A1625	-	cation diffusion facilitator family transporter
1544	 45.39	-2	1539635..1539916	+	93	163843821	-	BSUIS_A1626	-	hypothetical protein
1545	 58.38	0	1540096..1542291	-	731	163843822	-	BSUIS_A1627	-	anthranilate synthase
1546	 52.85	0	1542233..1542478	+	81	163843823	-	BSUIS_A1628	-	hypothetical protein
1547	 55.19	0	1542923..1543384	+	153	163843824	lrp	BSUIS_A1629	-	leucine-responsive regulatory protein
1548	 59.43	0	1543525..1543842	+	105	163843825	-	BSUIS_A1630	-	MarR family transcriptional regulator
1549	 61.25	0	1544030..1545322	+	430	163843826	-	BSUIS_A1631	-	major facilitator transporter
1550	 62.94	+1	1545317..1546282	-	321	163843827	-	BSUIS_A1632	-	ribosomal small subunit Rsm22
1551	 58.06	0	1546288..1547484	-	398	163843828	-	BSUIS_A1633	-	hypothetical protein
1552	 54.85	0	1547481..1547717	-	78	163843829	-	BSUIS_A1634	-	hypothetical protein
1553	 56.35	0	1547920..1548888	+	322	163843830	-	BSUIS_A1635	-	substrate-binding region of ABC-type glycine betaine transport system
1554	 56.63	0	1548977..1549813	+	278	163843831	-	BSUIS_A1636	-	binding-protein-dependent transport systems inner membrane component
1555	 58.64	0	1549983..1551029	+	348	163843832	-	BSUIS_A1637	-	ABC transporter related
1556	 56.77	0	1551303..1552151	-	282	163843833	-	BSUIS_A1638	-	hypothetical protein
1557	 58.42	0	1553003..1553911	-	302	163843834	dppC	BSUIS_A1639	-	peptide ABC transporter permease
1558	 55.46	0	1553919..1554926	-	335	163843835	dppB	BSUIS_A1640	-	peptide ABC transporter permease
1559	 50.28	-1	1557093..1557269	+	58	163843836	-	BSUIS_A1642	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1560	 39.91	-2	1557510..1557737	-	75	163843837	-	BSUIS_A1643	-	hypothetical protein
1561	 48.56	-1	1557727..1558074	+	115	163843838	nolR	BSUIS_A1644	-	nodulation protein nolR
1562	 54.51	0	1558104..1558934	+	276	163843839	-	BSUIS_A1645	-	tRNA/rRNA methyltransferase (SpoU)
1563	 59.57	0	1559156..1560352	-	398	163843840	trmU	BSUIS_A1646	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1564	 45.91	-2	1560390..1560548	-	52	163843841	-	BSUIS_A1647	-	hypothetical protein
1565	 57.97	0	1560657..1560932	+	91	163843842	-	BSUIS_A1648	-	hypothetical protein
1566	 56.12	0	1561135..1561428	+	97	163843843	-	BSUIS_A1649	-	hypothetical protein
1567	 56.30	0	1561476..1562411	-	311	163843844	-	BSUIS_A1650	-	Myosin-14
1568	 55.95	0	1562641..1563237	-	198	163843845	-	BSUIS_A1651	-	hypothetical protein
1569	 60.42	0	1563507..1563650	-	47	163843846	-	BSUIS_A1652	-	hypothetical protein
1570	 58.10	0	1563649..1564278	+	209	163843847	-	BSUIS_A1653	-	hypothetical protein
1571	 54.79	0	1564391..1565089	-	232	163843848	-	BSUIS_A1654	-	hypothetical protein
1572	 56.74	0	1565620..1566012	+	130	163843849	-	BSUIS_A1655	-	hypothetical protein
1573	 56.62	0	1566096..1567220	-	374	163843850	degT	BSUIS_A1656	-	pleiotropic regulatory protein
1574	 56.64	0	1567380..1568336	-	318	163843851	-	BSUIS_A1657	-	oxidoreductase domain-containing protein
1575	 49.41	-1	1568738..1568992	+	84	163843852	-	BSUIS_A1659	-	hypothetical protein
1576	 50.45	-1	1569168..1569950	-	260	163843853	-	BSUIS_A1660	-	lipooligosaccharide biosynthesis protein lic2B
1577	 60.49	0	1570694..1573801	+	1035	163843854	-	BSUIS_A1662	-	PAS domain-containing protein
1578	 45.45	-2	1574021..1574152	-	43	163843855	-	BSUIS_A1663	-	hypothetical protein
1579	 59.96	0	1574542..1576479	+	645	163843856	-	BSUIS_A1664	-	AsmA family protein
1580	 59.00	0	1576487..1577308	-	273	163843857	potC	BSUIS_A1665	-	spermidine/putrescine ABC transporter permease
1581	 56.25	0	1577310..1578221	-	303	163843858	-	BSUIS_A1666	-	binding-protein-dependent transport systems inner membrane component
1582	 57.55	0	1578237..1579388	-	383	163843859	-	BSUIS_A1667	-	polyamine ABC transporter, ATP-binding protein
1583	 55.34	0	1579630..1580733	-	367	163843860	-	BSUIS_A1668	-	hypothetical protein
1584	 62.63	+1	1580955..1582367	-	470	163843861	-	BSUIS_A1669	-	hypothetical protein
1585	 60.23	0	1582616..1583905	+	429	163843862	aceA	BSUIS_A1670	-	isocitrate lyase
1586	 55.70	0	1583940..1584176	+	78	163843863	-	BSUIS_A1671	-	hypothetical protein
1587	 55.04	0	1584173..1584301	+	42	163843864	-	BSUIS_A1672	-	hypothetical protein
1588	 55.04	0	1584298..1584426	+	42	163843865	-	BSUIS_A1673	-	hypothetical protein
1589	 54.49	0	1584410..1584565	-	51	163843866	-	BSUIS_A1674	-	hypothetical protein
1590	 59.64	0	1585388..1586155	+	255	163843867	-	BSUIS_A1676	-	7-alpha-hydroxysteroid dehydrogenase
1591	 56.98	0	1586221..1587015	+	264	163843868	-	BSUIS_A1677	-	hypothetical protein
1592	 56.10	0	1587022..1588782	+	586	163843869	-	BSUIS_A1678	-	hypothetical protein
1593	 57.72	0	1588798..1589412	+	204	163843870	-	BSUIS_A1679	-	hypothetical protein
1594	 54.20	0	1589692..1590477	+	261	163843871	ropB	BSUIS_A1680	-	22 kDa outer membrane protein precursor
1595	 53.51	0	1590614..1592164	-	516	163843872	-	BSUIS_A1681	-	patatin-like phospholipase domain-containing protein
1596	 47.06	-2	1592465..1592566	-	33	163843873	-	BSUIS_A1682	-	hypothetical protein
1597	 49.29	-1	1592717..1592998	+	93	163843874	-	BSUIS_A1683	-	hypothetical protein
1598	 55.11	0	1593275..1594018	-	247	163843875	-	BSUIS_A1684	-	dihydroxyacetone kinase, L subunit
1599	 56.12	0	1593988..1596072	-	694	163843876	-	BSUIS_A1685	-	3,4-dihydroxy-2-butanone kinase
1600	 57.53	0	1596231..1596887	-	218	163843877	-	BSUIS_A1686	-	dihydroxyacetone kinase, L subunit
1601	 56.66	0	1596884..1597912	-	342	163843878	-	BSUIS_A1687	-	3,4-dihydroxy-2-butanone kinase
1602	 55.81	0	1597909..1598682	-	257	163843879	polS	BSUIS_A1688	-	short chain dehydrogenase
1603	 55.35	0	1598771..1599760	-	329	163843880	mocB	BSUIS_A1689	-	rhizopine-binding protein precursor
1604	 57.21	0	1599936..1600940	-	334	163843881	-	BSUIS_A1690	-	hypothetical protein
1605	 55.85	0	1601036..1602514	-	492	163843882	-	BSUIS_A1691	-	ribose/galactose/methyl galactoside import ATP-binding protein 2
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.