IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1446	 48.28	-2	1447642..1447815	+	57	163843723	-	BSUIS_A1524	-	hypothetical protein
1447	 43.86	-2	1447869..1448096	-	75	163843724	-	BSUIS_A1525	-	hypothetical protein
1448	 59.89	0	1448222..1448575	+	117	163843725	-	BSUIS_A1526	-	hypothetical protein
1449	 57.07	0	1448736..1449308	-	190	163843726	-	BSUIS_A1527	-	hypothetical protein
1450	 55.15	0	1449544..1450038	+	164	163843727	-	BSUIS_A1528	-	integrase/recombinase
1451	 55.64	0	1450456..1451208	+	250	163843728	-	BSUIS_A1530	-	26 kDa periplasmic immunogenic protein precursor
1452	 58.84	0	1451382..1451726	-	114	163843729	-	BSUIS_A1531	-	hypothetical protein
1453	 54.68	0	1451970..1452428	-	152	163843730	-	BSUIS_A1532	-	hypothetical protein
1454	 54.98	0	1452620..1452910	-	96	163843731	-	BSUIS_A1533	-	hypothetical protein
1455	 56.72	0	1452934..1454934	-	666	163843732	rpoD	BSUIS_A1534	-	RNA polymerase sigma factor RpoD
1456	 48.08	-2	1454965..1455120	-	51	163843733	-	BSUIS_A1535	-	hypothetical protein
1457	 61.53	+1	1455402..1457369	-	655	163843734	dnaG	BSUIS_A1536	-	DNA primase
1458	 59.21	0	1457739..1459415	+	558	163843735	-	BSUIS_A1537	-	Na+ cotransporter
1459	 57.84	0	1459482..1459934	-	150	163843736	-	BSUIS_A1538	-	GatB/Yqey domain-containing protein
1460	 60.62	0	1460314..1461537	+	407	163843737	carA	BSUIS_A1539	-	carbamoyl phosphate synthase small subunit
1461	 54.32	0	1461350..1461673	+	107	163843738	-	BSUIS_A1540	-	hypothetical protein
1462	 61.27	+1	1461709..1462635	-	308	163843739	-	BSUIS_A1541	-	protein of unknown function zinc metallopeptidase
1463	 54.34	0	1462752..1463270	-	172	163843740	-	BSUIS_A1542	-	transmembrane protein
1464	 56.93	0	1463356..1464156	+	266	163843741	-	BSUIS_A1543	-	hypothetical protein
1465	 55.77	0	1464224..1464379	+	51	163843742	-	BSUIS_A1544	-	hypothetical protein
1466	 60.50	0	1464391..1467879	+	1162	163843743	carB	BSUIS_A1545	-	carbamoyl phosphate synthase large subunit
1467	 50.41	-1	1468476..1468598	-	40	163843744	-	BSUIS_A1546	-	hypothetical protein
1468	 58.57	0	1468595..1470460	-	621	163843745	-	BSUIS_A1547	-	ABC transporter
1469	 55.19	0	1470650..1471111	+	153	163843746	-	BSUIS_A1548	-	NUDIX hydrolase
1470	 58.10	0	1471304..1471513	+	69	163843747	-	BSUIS_A1549	-	hypothetical protein
1471	 57.03	0	1471643..1472254	-	203	163843748	gstA	BSUIS_A1550	-	protein gstA
1472	 49.61	-1	1472377..1472505	-	42	163843749	-	BSUIS_A1551	-	hypothetical protein
1473	 58.35	0	1472504..1473706	+	400	163843750	aspC	BSUIS_A1552	-	aspartate aminotransferase
1474	 39.35	-2	1473908..1474123	+	71	163843751	-	BSUIS_A1553	-	hypothetical protein
1475	 57.06	0	1474175..1475080	-	301	163843752	-	BSUIS_A1554	-	hypothetical protein
1476	 59.79	0	1475151..1476125	-	324	163843753	trxB	BSUIS_A1555	-	thioredoxin-disulfide reductase
1477	 57.67	0	1476447..1477847	+	466	163843754	-	BSUIS_A1556	-	cation transporter
1478	 51.52	-1	1477854..1478018	+	54	163843755	-	BSUIS_A1557	-	hypothetical protein
1479	 59.02	0	1478105..1478575	+	156	163843756	lrp	BSUIS_A1558	-	leucine-responsive regulatory protein
1480	 57.75	0	1478582..1479646	-	354	163843757	lpcC	BSUIS_A1559	-	lipopolysaccharide core biosynthesis mannosyltransferase lpcC
1481	 55.06	0	1479653..1480126	-	157	163843758	greA	BSUIS_A1560	-	transcription elongation factor GreA
1482	 54.73	0	1480395..1481450	-	351	163843759	-	BSUIS_A1561	-	hypothetical protein
1483	 48.68	-1	1481440..1481628	-	62	163843760	-	BSUIS_A1562	-	hypothetical protein
1484	 60.75	0	1481606..1482517	+	303	163843761	-	BSUIS_A1563	-	hypothetical protein
1485	 52.99	0	1482522..1482872	-	116	163843762	-	BSUIS_A1564	-	hypothetical protein
1486	 59.76	0	1483150..1484061	+	303	163843763	-	BSUIS_A1565	-	extensin family protein
1487	 57.95	0	1484194..1484583	-	129	163843764	-	BSUIS_A1566	-	thioesterase superfamily protein
1488	 60.65	0	1484805..1485386	+	193	163843765	-	BSUIS_A1567	-	SH3 type 3 domain-containing protein
1489	 60.33	0	1485512..1488334	+	940	163843766	uvrB	BSUIS_A1568	-	excinuclease ABC subunit B
1490	 60.45	0	1488466..1489269	+	267	163843767	-	BSUIS_A1569	-	lytic transglycosylase catalytic
1491	 52.31	-1	1489764..1489979	+	71	163843768	-	BSUIS_A1571	-	hypothetical protein
1492	 50.00	-1	1490217..1490336	-	39	163843769	-	BSUIS_A1572	-	hypothetical protein
1493	 61.79	+1	1490396..1490908	+	170	163843770	-	BSUIS_A1573	-	hypothetical protein
1494	 58.30	0	1490967..1491623	-	218	163843771	-	BSUIS_A1574	-	beta-lactamase domain-containing protein
1495	 58.51	0	1491837..1492118	-	93	163843772	-	BSUIS_A1575	-	hypothetical protein
1496	 46.80	-2	1492293..1492589	+	98	163843773	-	BSUIS_A1576	-	hypothetical protein
1497	 53.54	0	1492586..1493179	+	197	163843774	petP	BSUIS_A1577	-	HTH-type transcriptional regulator petP
1498	 59.23	0	1493261..1493986	+	241	163843775	petR	BSUIS_A1578	-	protein petR
1499	 59.52	0	1494130..1495473	+	447	163843776	-	BSUIS_A1579	-	integral membrane sensor signal transduction histidine kinase
1500	 50.39	-1	1495477..1495605	+	42	163843777	-	BSUIS_A1580	-	hypothetical protein
1501	 45.58	-2	1495805..1495951	-	48	163843778	-	BSUIS_A1581	-	hypothetical protein
1502	 54.60	0	1495905..1496252	-	115	163843779	csaA	BSUIS_A1582	-	export-related chaperone CsaA
1503	 50.91	-1	1496230..1496394	-	54	163843780	-	BSUIS_A1583	-	hypothetical protein
1504	 56.89	0	1496391..1496891	-	166	163843781	-	BSUIS_A1584	-	hypothetical protein
1505	 56.39	0	1497320..1497640	-	106	163843782	-	BSUIS_A1585	-	hypothetical protein
1506	 51.77	-1	1497658..1497798	-	46	163843783	-	BSUIS_A1586	-	hypothetical protein
1507	 61.70	+1	1497825..1498670	+	281	163843784	lgt	BSUIS_A1587	-	prolipoprotein diacylglyceryl transferase
1508	 59.20	0	1498663..1499760	+	365	163843785	-	BSUIS_A1588	-	hypothetical protein
1509	 58.57	0	1499940..1500791	+	283	163843786	-	BSUIS_A1589	-	hypothetical protein
1510	 57.81	0	1500904..1502055	+	383	163843787	pepQ	BSUIS_A1590	-	Xaa-Pro dipeptidase
1511	 58.92	0	1502109..1502663	+	184	163843788	-	BSUIS_A1591	-	hypothetical protein
1512	 59.70	0	1503002..1503934	+	310	163843789	prs	BSUIS_A1592	-	ribose-phosphate pyrophosphokinase
1513	 62.84	+1	1504082..1505623	-	513	163843790	-	BSUIS_A1593	-	hypothetical protein
1514	 58.17	0	1506315..1506938	+	207	163843791	-	BSUIS_A1594	-	50S ribosomal protein L25/general stress protein Ctc
1515	 57.10	0	1506967..1507719	+	250	163843792	pth	BSUIS_A1595	-	peptidyl-tRNA hydrolase
1516	 59.33	0	1507807..1508910	+	367	163843793	ychF	BSUIS_A1596	-	translation-associated GTPase
1517	 57.49	0	1508972..1509472	+	166	163843794	-	BSUIS_A1597	-	dehydratase
1518	 57.76	0	1509469..1509951	+	160	163843795	-	BSUIS_A1598	-	dehydratase
1519	 56.33	0	1509993..1510553	-	186	163843796	apt	BSUIS_A1599	-	adenine phosphoribosyltransferase
1520	 57.43	0	1510861..1511748	-	295	163843797	petC	BSUIS_A1600	-	cytochrome c1 precursor
1521	 57.04	0	1511762..1513060	-	432	163843798	petB	BSUIS_A1601	-	cytochrome b
1522	 58.16	0	1513082..1513645	-	187	163843799	petA	BSUIS_A1602	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1523	 58.41	0	1513897..1515762	-	621	163843800	-	BSUIS_A1603	-	ABC transporter related
1524	 57.62	0	1515919..1517775	-	618	163843801	-	BSUIS_A1604	-	ABC transporter related
1525	 58.54	0	1517932..1518411	+	159	163843802	-	BSUIS_A1605	-	tRNA/rRNA methyltransferase (SpoU)
1526	 62.07	+1	1519669..1519929	-	86	163843803	-	BSUIS_A1607	-	hypothetical protein
1527	 57.57	0	1520223..1521134	+	303	163843804	-	BSUIS_A1608	-	coproporphyrinogen III oxidase
1528	 61.01	0	1521168..1521662	-	164	163843805	-	BSUIS_A1609	-	GCN5-related N-acetyltransferase
1529	 59.28	0	1522695..1523966	-	423	163843806	cca	BSUIS_A1611	-	CCA-adding enzyme
1530	 61.22	0	1523963..1524586	-	207	163843807	-	BSUIS_A1612	-	NUDIX hydrolase
1531	 60.06	0	1524583..1525248	-	221	163843808	-	BSUIS_A1613	-	hypothetical protein
1532	 61.90	+1	1525368..1526375	+	335	163843809	-	BSUIS_A1614	-	hypothetical protein
1533	 63.34	+1	1526375..1527307	+	310	163843810	-	BSUIS_A1615	-	hypothetical protein
1534	 61.65	+1	1527304..1530153	+	949	163843811	-	BSUIS_A1616	-	hypothetical protein
1535	 60.55	0	1530217..1532292	+	691	163843812	-	BSUIS_A1617	-	hypothetical protein
1536	 63.12	+1	1532360..1532866	-	168	163843813	-	BSUIS_A1618	-	GCN5-related N-acetyltransferase
1537	 56.91	0	1533170..1534153	+	327	163843814	-	BSUIS_A1619	-	glutathione S-transferase
1538	 56.29	0	1534301..1534984	+	227	163843815	alkL	BSUIS_A1620	-	Outer membrane protein alkL precursor
1539	 53.73	0	1535018..1535473	-	151	163843816	-	BSUIS_A1621	-	NUDIX hydrolase
1540	 59.91	0	1535582..1536484	+	300	163843817	-	BSUIS_A1622	-	metallophosphoesterase
1541	 57.47	0	1536685..1538412	-	575	163843818	leuA	BSUIS_A1623	-	2-isopropylmalate synthase
1542	 58.49	0	1538544..1538702	-	52	163843819	-	BSUIS_A1624	-	hypothetical protein
1543	 58.53	0	1538717..1539625	-	302	163843820	-	BSUIS_A1625	-	cation diffusion facilitator family transporter
1544	 45.39	-2	1539635..1539916	+	93	163843821	-	BSUIS_A1626	-	hypothetical protein
1545	 58.38	0	1540096..1542291	-	731	163843822	-	BSUIS_A1627	-	anthranilate synthase
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.