IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1374	 60.13	0	1370982..1371884	-	300	163843651	hflC	BSUIS_A1447	-	HflC protein
1375	 59.17	0	1371884..1373083	-	399	163843652	hflK	BSUIS_A1448	-	HflK protein
1376	 57.80	0	1373160..1373678	-	172	163843653	-	BSUIS_A1449	-	dihydrofolate reductase type 3
1377	 55.60	0	1373681..1374475	-	264	163843654	thyA	BSUIS_A1450	-	thymidylate synthase
1378	 57.69	0	1374576..1374887	-	103	163843655	-	BSUIS_A1451	-	hypothetical protein
1379	 47.62	-2	1375315..1375356	+	13	163843656	-	BSUIS_A1452	-	tmRNA tag peptide
1380	 60.56	0	1375460..1376671	-	403	163843657	-	BSUIS_A1453	-	Bcr/CflA subfamily drug resistance transporter
1381	 51.70	-1	1376688..1376834	-	48	163843658	-	BSUIS_A1454	-	hypothetical protein
1382	 56.94	0	1377065..1377691	+	208	163843659	-	BSUIS_A1455	-	TetR family transcriptional regulator
1383	 54.04	0	1377772..1378341	+	189	163843660	-	BSUIS_A1456	-	hypothetical protein
1384	 52.24	-1	1378721..1378921	+	66	163843661	-	BSUIS_A1457	-	hypothetical protein
1385	 57.54	0	1378918..1379169	+	83	163843662	-	BSUIS_A1458	-	hypothetical protein
1386	 60.20	0	1379197..1382940	-	1247	163843663	-	BSUIS_A1459	-	AsmA family protein
1387	 48.23	-2	1382995..1383135	-	46	163843664	-	BSUIS_A1460	-	hypothetical protein
1388	 59.42	0	1383132..1384538	-	468	163843665	-	BSUIS_A1461	-	hypothetical protein
1389	 60.39	0	1384563..1385072	-	169	163843666	-	BSUIS_A1462	-	hypothetical protein
1390	 60.54	0	1385192..1386268	+	358	163843667	-	BSUIS_A1463	-	serine/threonine protein kinase
1391	 59.45	0	1386327..1388903	+	858	163843668	pcrA	BSUIS_A1464	-	ATP-dependent DNA helicase pcrA
1392	 54.22	0	1388977..1389474	-	165	163843669	-	BSUIS_A1465	-	CreA family protein
1393	 56.96	0	1389539..1390228	-	229	163843670	-	BSUIS_A1466	-	chloramphenicol acetyltransferase
1394	 55.33	0	1390337..1390927	+	196	163843671	-	BSUIS_A1467	-	electron transport protein SCO1/SenC
1395	 58.16	0	1390965..1391822	+	285	163843672	prmA	BSUIS_A1468	-	ribosomal protein L11 methyltransferase
1396	 59.50	0	1391905..1393731	+	608	163843673	-	BSUIS_A1469	-	peptidase M24
1397	 56.88	0	1393732..1394436	-	234	163843674	-	BSUIS_A1470	-	hypothetical protein
1398	 59.95	0	1394436..1396595	-	719	163843675	ligA	BSUIS_A1471	-	NAD-dependent DNA ligase LigA
1399	 62.32	+1	1396781..1398460	-	559	163843676	recN	BSUIS_A1472	-	DNA repair protein RecN
1400	 56.60	0	1398473..1399336	-	287	163843677	-	BSUIS_A1473	-	hypothetical protein
1401	 49.19	-1	1399438..1399683	+	81	163843678	-	BSUIS_A1474	-	hypothetical protein
1402	 56.45	0	1399743..1400603	-	286	163843679	lpxC	BSUIS_A1475	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1403	 46.83	-2	1400706..1400831	+	41	163843680	-	BSUIS_A1476	-	hypothetical protein
1404	 63.79	+1	1401143..1402843	-	566	163843681	ftsZ	BSUIS_A1477	-	cell division protein FtsZ
1405	 60.70	0	1402940..1404262	-	440	163843682	ftsA	BSUIS_A1478	-	cell division protein FtsA
1406	 58.13	0	1404259..1405125	-	288	163843683	ftsQ	BSUIS_A1479	-	cell division protein FtsQ
1407	 55.34	0	1405182..1406108	-	308	163843684	-	BSUIS_A1480	-	D-alanine--D-alanine ligase
1408	 61.30	+1	1406351..1407319	-	322	163843685	murB	BSUIS_A1481	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1409	 61.09	0	1407319..1408734	-	471	163843686	murC	BSUIS_A1482	-	UDP-N-acetylmuramate--L-alanine ligase
1410	 62.02	+1	1408731..1409870	-	379	163843687	murG	BSUIS_A1483	-	N-acetylglucosaminyl transferase
1411	 59.15	0	1410097..1411254	-	385	163843688	ftsW	BSUIS_A1484	-	cell division protein FtsW
1412	 60.61	0	1411254..1412657	-	467	163843689	murD	BSUIS_A1485	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1413	 57.25	0	1412670..1413752	-	360	163843690	mraY	BSUIS_A1486	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1414	 58.99	0	1413779..1415224	-	481	163843691	murF	BSUIS_A1487	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1415	 59.99	0	1415221..1416687	-	488	163843692	murE	BSUIS_A1488	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1416	 59.38	0	1416748..1418571	-	607	163843693	penA	BSUIS_A1489	-	penicillin-binding protein 2
1417	 55.72	0	1418574..1418975	-	133	163843694	-	BSUIS_A1490	-	hypothetical protein
1418	 61.58	+1	1418980..1420020	-	346	163843695	mraW	BSUIS_A1491	-	S-adenosyl-methyltransferase MraW
1419	 51.48	-1	1419998..1420267	+	89	163843696	-	BSUIS_A1492	-	hypothetical protein
1420	 58.79	0	1420582..1421952	+	456	163843697	-	BSUIS_A1493	-	manganese transport protein MntH
1421	 55.51	0	1423638..1424444	-	268	163843698	ampD	BSUIS_A1497	-	protein ampD
1422	 54.43	0	1424441..1425151	-	236	163843699	djlA	BSUIS_A1498	-	DnaJ-like protein djlA
1423	 58.77	0	1425271..1425675	-	134	163843700	-	BSUIS_A1499	-	hypothetical protein
1424	 59.47	0	1425979..1426812	+	277	163843701	-	BSUIS_A1500	-	glycosy hydrolase family protein
1425	 58.65	0	1428226..1429161	+	311	163843702	-	BSUIS_A1501	-	auxin efflux carrier
1426	 55.10	0	1429501..1429647	+	48	163843703	-	BSUIS_A1502	-	hypothetical protein
1427	 57.59	0	1429596..1430498	-	300	163843704	metF	BSUIS_A1503	-	5,10-methylenetetrahydrofolate reductase
1428	 60.04	0	1430544..1431569	-	341	163843705	-	BSUIS_A1504	-	methyltransferase type 11
1429	 58.64	0	1431689..1432012	+	107	163843706	-	BSUIS_A1505	-	hypothetical protein
1430	 50.20	-1	1433401..1433655	+	84	163843707	-	BSUIS_A1507	-	hypothetical protein
1431	 56.25	0	1433829..1434596	-	255	163843708	tam	BSUIS_A1508	-	trans-aconitate 2-methyltransferase
1432	 56.12	0	1434669..1436318	-	549	163843709	-	BSUIS_A1509	-	putative ABC transporter ATP-binding protein
1433	 61.11	0	1436398..1436577	-	59	163843710	-	BSUIS_A1510	-	hypothetical protein
1434	 57.14	0	1436814..1437758	+	314	163843711	-	BSUIS_A1511	-	lysophospholipase L2
1435	 56.48	0	1438557..1439243	-	228	163843712	-	BSUIS_A1513	-	hypothetical protein
1436	 57.29	0	1439594..1440841	+	415	163843713	-	BSUIS_A1514	-	biphenyl dioxygenase subunit alpha
1437	 59.25	0	1440875..1441993	+	372	163843714	-	BSUIS_A1515	-	ferredoxin, leaf L-A
1438	 55.86	0	1441996..1442217	-	73	163843715	-	BSUIS_A1516	-	hypothetical protein
1439	 56.67	0	1442355..1442984	+	209	163843716	-	BSUIS_A1517	-	nicotinamidase
1440	 54.52	0	1442981..1444042	-	353	163843717	-	BSUIS_A1518	-	hypothetical protein
1441	 53.93	0	1444389..1444655	+	88	163843718	-	BSUIS_A1519	-	hypothetical protein
1442	 51.11	-1	1444611..1444790	-	59	163843719	-	BSUIS_A1520	-	hypothetical protein
1443	 54.44	0	1444853..1445956	-	367	163843720	-	BSUIS_A1521	-	penicillin acylase precursor
1444	 54.48	0	1446232..1447035	+	267	163843721	-	BSUIS_A1522	-	hypothetical protein
1445	 60.83	0	1447239..1447358	-	39	163843722	-	BSUIS_A1523	-	hypothetical protein
1446	 48.28	-2	1447642..1447815	+	57	163843723	-	BSUIS_A1524	-	hypothetical protein
1447	 43.86	-2	1447869..1448096	-	75	163843724	-	BSUIS_A1525	-	hypothetical protein
1448	 59.89	0	1448222..1448575	+	117	163843725	-	BSUIS_A1526	-	hypothetical protein
1449	 57.07	0	1448736..1449308	-	190	163843726	-	BSUIS_A1527	-	hypothetical protein
1450	 55.15	0	1449544..1450038	+	164	163843727	-	BSUIS_A1528	-	integrase/recombinase
1451	 55.64	0	1450456..1451208	+	250	163843728	-	BSUIS_A1530	-	26 kDa periplasmic immunogenic protein precursor
1452	 58.84	0	1451382..1451726	-	114	163843729	-	BSUIS_A1531	-	hypothetical protein
1453	 54.68	0	1451970..1452428	-	152	163843730	-	BSUIS_A1532	-	hypothetical protein
1454	 54.98	0	1452620..1452910	-	96	163843731	-	BSUIS_A1533	-	hypothetical protein
1455	 56.72	0	1452934..1454934	-	666	163843732	rpoD	BSUIS_A1534	-	RNA polymerase sigma factor RpoD
1456	 48.08	-2	1454965..1455120	-	51	163843733	-	BSUIS_A1535	-	hypothetical protein
1457	 61.53	+1	1455402..1457369	-	655	163843734	dnaG	BSUIS_A1536	-	DNA primase
1458	 59.21	0	1457739..1459415	+	558	163843735	-	BSUIS_A1537	-	Na+ cotransporter
1459	 57.84	0	1459482..1459934	-	150	163843736	-	BSUIS_A1538	-	GatB/Yqey domain-containing protein
1460	 60.62	0	1460314..1461537	+	407	163843737	carA	BSUIS_A1539	-	carbamoyl phosphate synthase small subunit
1461	 54.32	0	1461350..1461673	+	107	163843738	-	BSUIS_A1540	-	hypothetical protein
1462	 61.27	+1	1461709..1462635	-	308	163843739	-	BSUIS_A1541	-	protein of unknown function zinc metallopeptidase
1463	 54.34	0	1462752..1463270	-	172	163843740	-	BSUIS_A1542	-	transmembrane protein
1464	 56.93	0	1463356..1464156	+	266	163843741	-	BSUIS_A1543	-	hypothetical protein
1465	 55.77	0	1464224..1464379	+	51	163843742	-	BSUIS_A1544	-	hypothetical protein
1466	 60.50	0	1464391..1467879	+	1162	163843743	carB	BSUIS_A1545	-	carbamoyl phosphate synthase large subunit
1467	 50.41	-1	1468476..1468598	-	40	163843744	-	BSUIS_A1546	-	hypothetical protein
1468	 58.57	0	1468595..1470460	-	621	163843745	-	BSUIS_A1547	-	ABC transporter
1469	 55.19	0	1470650..1471111	+	153	163843746	-	BSUIS_A1548	-	NUDIX hydrolase
1470	 58.10	0	1471304..1471513	+	69	163843747	-	BSUIS_A1549	-	hypothetical protein
1471	 57.03	0	1471643..1472254	-	203	163843748	gstA	BSUIS_A1550	-	protein gstA
1472	 49.61	-1	1472377..1472505	-	42	163843749	-	BSUIS_A1551	-	hypothetical protein
1473	 58.35	0	1472504..1473706	+	400	163843750	aspC	BSUIS_A1552	-	aspartate aminotransferase
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.