IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1319	 53.52	0	1318260..1318799	+	179	163843596	-	BSUIS_A1388	-	hypothetical protein
1320	 54.61	0	1318933..1319355	-	140	163843597	-	BSUIS_A1389	-	RbsD or FucU transport
1321	 59.38	0	1319448..1320257	-	269	163843598	-	BSUIS_A1390	-	short chain dehydrogenase
1322	 58.46	0	1320272..1321051	-	259	163843599	-	BSUIS_A1391	-	hypothetical protein
1323	 59.93	0	1321065..1322192	-	375	163843600	-	BSUIS_A1392	-	monosaccharide-transporting ATPase
1324	 59.68	0	1322479..1323408	-	309	163843601	-	BSUIS_A1393	-	periplasmic binding protein/LacI transcriptional regulator
1325	 57.53	0	1323788..1324903	+	371	163843602	cbaC	BSUIS_A1394	-	1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase
1326	 62.16	+1	1324900..1325676	-	258	163843603	cbrD	BSUIS_A1395	-	achromobactin transport ATP-binding protein CbrD
1327	 62.08	+1	1325673..1326674	-	333	163843604	-	BSUIS_A1396	-	transport system permease protein
1328	 60.60	0	1326667..1327506	-	279	163843605	-	BSUIS_A1397	-	periplasmic binding protein
1329	 56.36	0	1327520..1329382	-	620	163843606	-	BSUIS_A1398	-	TonB-dependent receptor
1330	 53.21	0	1329671..1329826	-	51	163843607	-	BSUIS_A1400	-	hypothetical protein
1331	 57.50	0	1329876..1330988	-	370	163843608	-	BSUIS_A1401	-	ABC-2 type transporter
1332	 58.11	0	1330990..1333758	-	922	163843609	-	BSUIS_A1402	-	ABC transporter related
1333	 61.05	0	1333755..1334822	-	355	163843610	-	BSUIS_A1403	-	HlyD family secretion protein
1334	 52.22	-1	1334802..1334981	+	59	163843611	-	BSUIS_A1404	-	hypothetical protein
1335	 54.63	0	1335368..1336663	-	431	163843612	-	BSUIS_A1405	-	hypothetical protein
1336	 54.80	0	1337242..1337418	-	58	163843613	-	BSUIS_A1406	-	hypothetical protein
1337	 56.77	0	1337478..1337780	+	100	163843614	ureA	BSUIS_A1407	-	urease subunit gamma
1338	 57.71	0	1337829..1338308	+	159	163843615	ureB	BSUIS_A1408	-	urease subunit beta
1339	 59.23	0	1338348..1340069	+	573	163843616	ureC	BSUIS_A1409	-	urease subunit alpha
1340	 58.91	0	1340117..1340722	+	201	163843617	ureE	BSUIS_A1410	-	urease accessory protein UreE
1341	 58.74	0	1340694..1341425	+	243	163843618	ureF	BSUIS_A1411	-	urease accessory protein ureF
1342	 60.19	0	1342998..1344047	+	349	163843619	-	BSUIS_A1414	-	Urea transporter, kidney
1343	 57.44	0	1344074..1344832	+	252	163843620	-	BSUIS_A1415	-	ABC cobalt transporter, periplasmic binding protein CbiN
1344	 61.64	+1	1344852..1345487	+	211	163843621	-	BSUIS_A1416	-	cobalt transport protein CbiM
1345	 62.52	+1	1345484..1346110	+	208	163843622	-	BSUIS_A1417	-	CbiL protein
1346	 60.00	0	1346107..1346871	+	254	163843623	cbiQ	BSUIS_A1418	-	cobalt ABC transporter, permease protein CbiQ
1347	 57.36	0	1346868..1347587	+	239	163843624	-	BSUIS_A1419	-	hypothetical protein
1348	 57.69	0	1347608..1348420	-	270	163843625	crcB	BSUIS_A1420	-	camphor resistance protein CrcB
1349	 56.92	0	1348433..1348822	-	129	163843626	crcB	BSUIS_A1421	-	camphor resistance protein CrcB
1350	 56.43	0	1349091..1350116	+	341	163843627	-	BSUIS_A1422	-	hypothetical protein
1351	 51.95	-1	1350249..1350683	-	144	163843628	-	BSUIS_A1423	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1352	 47.83	-2	1350685..1350822	+	45	163843629	-	BSUIS_A1424	-	hypothetical protein
1353	 57.93	0	1350835..1351761	-	308	163843630	-	BSUIS_A1425	-	PhzF family phenazine biosynthesis protein
1354	 58.47	0	1351866..1352597	-	243	163843631	-	BSUIS_A1426	-	NUDIX hydrolase
1355	 54.84	0	1353803..1354318	+	171	163843632	-	BSUIS_A1428	-	BA14K family protein
1356	 57.34	0	1354364..1355596	-	410	163843633	-	BSUIS_A1429	-	GntR family transcriptional regulator
1357	 49.65	-1	1355729..1356010	-	93	163843634	-	BSUIS_A1430	-	hypothetical protein
1358	 57.75	0	1356120..1357139	-	339	163843635	ilvC	BSUIS_A1431	-	ketol-acid reductoisomerase
1359	 60.12	0	1357195..1357836	-	213	163843636	-	BSUIS_A1432	-	TetR family transcriptional regulator
1360	 58.18	0	1358047..1360002	-	651	163843637	kup	BSUIS_A1433	-	potassium transport system protein kup
1361	 57.23	0	1360145..1360303	-	52	163843638	-	BSUIS_A1434	-	hypothetical protein
1362	 59.51	0	1360372..1361112	-	246	163843639	pdxJ	BSUIS_A1435	-	pyridoxal phosphate biosynthetic protein PdxJ
1363	 53.48	0	1361409..1361810	+	133	163843640	-	BSUIS_A1436	-	hypothetical protein
1364	 57.84	0	1361811..1362977	-	388	163843641	-	BSUIS_A1437	-	hypothetical protein
1365	 52.38	-1	1362931..1363077	+	48	163843642	-	BSUIS_A1438	-	hypothetical protein
1366	 58.46	0	1363116..1363688	-	190	163843643	ilvN	BSUIS_A1439	-	acetolactate synthase 3 regulatory subunit
1367	 58.44	0	1363707..1365530	-	607	163843644	ilvB	BSUIS_A1440	-	acetolactate synthase 3 catalytic subunit
1368	 59.38	0	1365778..1366710	-	310	163843645	miaA	BSUIS_A1441	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1369	 60.22	0	1366728..1367627	+	299	163843646	serB	BSUIS_A1442	-	phosphoserine phosphatase SerB
1370	 59.22	0	1367668..1368849	-	393	163843647	-	BSUIS_A1443	-	hypothetical protein
1371	 53.47	0	1368825..1368968	-	47	163843648	-	BSUIS_A1444	-	hypothetical protein
1372	 58.67	0	1368979..1370553	-	524	163843649	degP	BSUIS_A1445	-	protease Do
1373	 60.22	0	1370777..1370962	-	61	163843650	-	BSUIS_A1446	-	hypothetical protein
1374	 60.13	0	1370982..1371884	-	300	163843651	hflC	BSUIS_A1447	-	HflC protein
1375	 59.17	0	1371884..1373083	-	399	163843652	hflK	BSUIS_A1448	-	HflK protein
1376	 57.80	0	1373160..1373678	-	172	163843653	-	BSUIS_A1449	-	dihydrofolate reductase type 3
1377	 55.60	0	1373681..1374475	-	264	163843654	thyA	BSUIS_A1450	-	thymidylate synthase
1378	 57.69	0	1374576..1374887	-	103	163843655	-	BSUIS_A1451	-	hypothetical protein
1379	 47.62	-2	1375315..1375356	+	13	163843656	-	BSUIS_A1452	-	tmRNA tag peptide
1380	 60.56	0	1375460..1376671	-	403	163843657	-	BSUIS_A1453	-	Bcr/CflA subfamily drug resistance transporter
1381	 51.70	-1	1376688..1376834	-	48	163843658	-	BSUIS_A1454	-	hypothetical protein
1382	 56.94	0	1377065..1377691	+	208	163843659	-	BSUIS_A1455	-	TetR family transcriptional regulator
1383	 54.04	0	1377772..1378341	+	189	163843660	-	BSUIS_A1456	-	hypothetical protein
1384	 52.24	-1	1378721..1378921	+	66	163843661	-	BSUIS_A1457	-	hypothetical protein
1385	 57.54	0	1378918..1379169	+	83	163843662	-	BSUIS_A1458	-	hypothetical protein
1386	 60.20	0	1379197..1382940	-	1247	163843663	-	BSUIS_A1459	-	AsmA family protein
1387	 48.23	-2	1382995..1383135	-	46	163843664	-	BSUIS_A1460	-	hypothetical protein
1388	 59.42	0	1383132..1384538	-	468	163843665	-	BSUIS_A1461	-	hypothetical protein
1389	 60.39	0	1384563..1385072	-	169	163843666	-	BSUIS_A1462	-	hypothetical protein
1390	 60.54	0	1385192..1386268	+	358	163843667	-	BSUIS_A1463	-	serine/threonine protein kinase
1391	 59.45	0	1386327..1388903	+	858	163843668	pcrA	BSUIS_A1464	-	ATP-dependent DNA helicase pcrA
1392	 54.22	0	1388977..1389474	-	165	163843669	-	BSUIS_A1465	-	CreA family protein
1393	 56.96	0	1389539..1390228	-	229	163843670	-	BSUIS_A1466	-	chloramphenicol acetyltransferase
1394	 55.33	0	1390337..1390927	+	196	163843671	-	BSUIS_A1467	-	electron transport protein SCO1/SenC
1395	 58.16	0	1390965..1391822	+	285	163843672	prmA	BSUIS_A1468	-	ribosomal protein L11 methyltransferase
1396	 59.50	0	1391905..1393731	+	608	163843673	-	BSUIS_A1469	-	peptidase M24
1397	 56.88	0	1393732..1394436	-	234	163843674	-	BSUIS_A1470	-	hypothetical protein
1398	 59.95	0	1394436..1396595	-	719	163843675	ligA	BSUIS_A1471	-	NAD-dependent DNA ligase LigA
1399	 62.32	+1	1396781..1398460	-	559	163843676	recN	BSUIS_A1472	-	DNA repair protein RecN
1400	 56.60	0	1398473..1399336	-	287	163843677	-	BSUIS_A1473	-	hypothetical protein
1401	 49.19	-1	1399438..1399683	+	81	163843678	-	BSUIS_A1474	-	hypothetical protein
1402	 56.45	0	1399743..1400603	-	286	163843679	lpxC	BSUIS_A1475	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1403	 46.83	-2	1400706..1400831	+	41	163843680	-	BSUIS_A1476	-	hypothetical protein
1404	 63.79	+1	1401143..1402843	-	566	163843681	ftsZ	BSUIS_A1477	-	cell division protein FtsZ
1405	 60.70	0	1402940..1404262	-	440	163843682	ftsA	BSUIS_A1478	-	cell division protein FtsA
1406	 58.13	0	1404259..1405125	-	288	163843683	ftsQ	BSUIS_A1479	-	cell division protein FtsQ
1407	 55.34	0	1405182..1406108	-	308	163843684	-	BSUIS_A1480	-	D-alanine--D-alanine ligase
1408	 61.30	+1	1406351..1407319	-	322	163843685	murB	BSUIS_A1481	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1409	 61.09	0	1407319..1408734	-	471	163843686	murC	BSUIS_A1482	-	UDP-N-acetylmuramate--L-alanine ligase
1410	 62.02	+1	1408731..1409870	-	379	163843687	murG	BSUIS_A1483	-	N-acetylglucosaminyl transferase
1411	 59.15	0	1410097..1411254	-	385	163843688	ftsW	BSUIS_A1484	-	cell division protein FtsW
1412	 60.61	0	1411254..1412657	-	467	163843689	murD	BSUIS_A1485	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1413	 57.25	0	1412670..1413752	-	360	163843690	mraY	BSUIS_A1486	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1414	 58.99	0	1413779..1415224	-	481	163843691	murF	BSUIS_A1487	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1415	 59.99	0	1415221..1416687	-	488	163843692	murE	BSUIS_A1488	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1416	 59.38	0	1416748..1418571	-	607	163843693	penA	BSUIS_A1489	-	penicillin-binding protein 2
1417	 55.72	0	1418574..1418975	-	133	163843694	-	BSUIS_A1490	-	hypothetical protein
1418	 61.58	+1	1418980..1420020	-	346	163843695	mraW	BSUIS_A1491	-	S-adenosyl-methyltransferase MraW
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.