IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1270	 58.53	0	1265143..1265781	+	212	163843547	ropB	BSUIS_A1334	-	22 kDa outer membrane protein precursor
1271	 61.03	0	1266070..1267275	-	401	163843548	cbiE	BSUIS_A1335	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
1272	 58.87	0	1267349..1268644	+	431	163843549	cobG	BSUIS_A1336	-	precorrin-3B synthase
1273	 62.36	+1	1268654..1269280	+	208	163843550	cobH	BSUIS_A1337	-	precorrin-8X methylmutase
1274	 59.05	0	1269280..1270014	+	244	163843551	cobI	BSUIS_A1338	-	precorrin-2 C(20)-methyltransferase
1275	 60.48	0	1269960..1271705	+	581	163843552	cobJ	BSUIS_A1339	-	precorrin-3B C17-methyltransferase
1276	 61.75	+1	1271761..1272228	-	155	163843553	-	BSUIS_A1340	-	hypothetical protein
1277	 55.74	0	1272353..1273249	-	298	163843554	-	BSUIS_A1341	-	phospholipase/carboxylesterase
1278	 56.70	0	1273253..1273774	-	173	163843555	hpaC	BSUIS_A1342	-	4-hydroxyphenylacetate 3-monooxygenase reductase component
1279	 58.84	0	1273823..1275010	+	395	163843556	-	BSUIS_A1343	-	extracellular ligand-binding receptor
1280	 58.94	0	1274996..1275979	-	327	163843557	cobD	BSUIS_A1344	-	cobalamin biosynthesis protein
1281	 60.76	0	1276016..1277014	-	332	163843558	cobC	BSUIS_A1345	-	threonine-phosphate decarboxylase
1282	 60.26	0	1277011..1278321	-	436	163843559	cobB	BSUIS_A1346	-	cobyrinic acid a,c-diamide synthase
1283	 62.00	+1	1278318..1279196	-	292	163843560	cobA	BSUIS_A1347	-	uroporphyrin-III C-methyltransferase
1284	 61.45	+1	1280351..1281097	+	248	163843561	cobK	BSUIS_A1349	-	cobalt-precorrin-6x reductase
1285	 58.50	0	1281086..1281844	-	252	163843562	cobM	BSUIS_A1350	-	precorrin-4 C11-methyltransferase
1286	 58.33	0	1281904..1282299	-	131	163843563	cobE	BSUIS_A1351	-	protein cobE
1287	 54.59	0	1282292..1282738	-	148	163843564	-	BSUIS_A1352	-	hypothetical protein
1288	 59.54	0	1282898..1283683	+	261	163843565	-	BSUIS_A1353	-	hypothetical protein
1289	 59.91	0	1283680..1284108	-	142	163843566	-	BSUIS_A1354	-	hypothetical protein
1290	 55.87	0	1284108..1284746	-	212	163843567	cobO	BSUIS_A1355	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1291	 62.47	+1	1284739..1288530	-	1263	163843568	cobN	BSUIS_A1356	-	cobaltochelatase
1292	 57.62	0	1288530..1289579	-	349	163843569	cobW	BSUIS_A1357	-	cobalamin biosynthesis protein CobW
1293	 60.15	0	1289583..1290104	-	173	163843570	cobP	BSUIS_A1358	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1294	 61.23	0	1290110..1290826	-	238	163843571	cbtA	BSUIS_A1359	-	cobalt transporter subunit CbtA (proposed)
1295	 57.14	0	1290915..1291103	-	62	163843572	cbtB	BSUIS_A1360	-	cobalt transporter subunit CbtB (proposed)
1296	 60.54	0	1291417..1292868	-	483	163843573	cobQ	BSUIS_A1362	-	cobyric acid synthase
1297	 50.54	-1	1292879..1293064	-	61	163843574	-	BSUIS_A1363	-	hypothetical protein
1298	 60.49	0	1294333..1295223	+	296	163843575	mmsB	BSUIS_A1365	-	3-hydroxyisobutyrate dehydrogenase
1299	 45.83	-2	1295459..1295626	-	55	163843576	-	BSUIS_A1366	-	hypothetical protein
1300	 58.85	0	1295933..1296853	-	306	163843577	pecT	BSUIS_A1367	-	HTH-type transcriptional regulator pecT
1301	 57.56	0	1297299..1298297	+	332	163843578	-	BSUIS_A1368	-	hypothetical protein
1302	 58.67	0	1298563..1301124	+	853	163843579	-	BSUIS_A1369	-	dimethylglycine dehydrogenase
1303	 55.67	0	1301210..1301500	-	96	163843580	-	BSUIS_A1370	-	hypothetical protein
1304	 57.14	0	1301607..1304189	-	860	163843581	-	BSUIS_A1371	-	MscS mechanosensitive ion channel
1305	 56.41	0	1304313..1304897	-	194	163843582	-	BSUIS_A1372	-	hypothetical protein
1306	 59.62	0	1304373..1304840	+	155	163843583	-	BSUIS_A1373	-	hypothetical protein
1307	 59.34	0	1304949..1307486	+	845	163843584	secD	BSUIS_A1374	-	bifunctional preprotein translocase subunit SecD/SecF
1308	 59.41	0	1307564..1309423	+	619	163843585	-	BSUIS_A1375	-	potassium efflux system protein
1309	 55.56	0	1309423..1310394	+	323	163843586	-	BSUIS_A1376	-	hypothetical protein
1310	 60.89	0	1310621..1311226	+	201	163843587	-	BSUIS_A1377	-	hypothetical protein
1311	 56.44	0	1311272..1312102	-	276	163843588	cysW	BSUIS_A1378	-	sulfate ABC transporter, permease protein CysW
1312	 58.56	0	1312089..1312952	-	287	163843589	cysT	BSUIS_A1379	-	sulfate ABC transporter, permease protein CysT
1313	 55.52	0	1313079..1314083	-	334	163843590	-	BSUIS_A1380	-	sulfate ABC transporter, sulfate-binding protein
1314	 52.69	-1	1314349..1314534	-	61	163843591	-	BSUIS_A1381	-	hypothetical protein
1315	 58.95	0	1314714..1316282	-	522	163843592	-	BSUIS_A1382	-	integral membrane protein TerC
1316	 59.73	0	1316700..1317362	-	220	163843593	-	BSUIS_A1383	-	SNARE associated Golgi protein
1317	 53.12	0	1317438..1317533	+	31	163843594	-	BSUIS_A1384	-	hypothetical protein
1318	 45.83	-2	1317665..1317832	-	55	163843595	-	BSUIS_A1385	-	hypothetical protein
1319	 53.52	0	1318260..1318799	+	179	163843596	-	BSUIS_A1388	-	hypothetical protein
1320	 54.61	0	1318933..1319355	-	140	163843597	-	BSUIS_A1389	-	RbsD or FucU transport
1321	 59.38	0	1319448..1320257	-	269	163843598	-	BSUIS_A1390	-	short chain dehydrogenase
1322	 58.46	0	1320272..1321051	-	259	163843599	-	BSUIS_A1391	-	hypothetical protein
1323	 59.93	0	1321065..1322192	-	375	163843600	-	BSUIS_A1392	-	monosaccharide-transporting ATPase
1324	 59.68	0	1322479..1323408	-	309	163843601	-	BSUIS_A1393	-	periplasmic binding protein/LacI transcriptional regulator
1325	 57.53	0	1323788..1324903	+	371	163843602	cbaC	BSUIS_A1394	-	1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase
1326	 62.16	+1	1324900..1325676	-	258	163843603	cbrD	BSUIS_A1395	-	achromobactin transport ATP-binding protein CbrD
1327	 62.08	+1	1325673..1326674	-	333	163843604	-	BSUIS_A1396	-	transport system permease protein
1328	 60.60	0	1326667..1327506	-	279	163843605	-	BSUIS_A1397	-	periplasmic binding protein
1329	 56.36	0	1327520..1329382	-	620	163843606	-	BSUIS_A1398	-	TonB-dependent receptor
1330	 53.21	0	1329671..1329826	-	51	163843607	-	BSUIS_A1400	-	hypothetical protein
1331	 57.50	0	1329876..1330988	-	370	163843608	-	BSUIS_A1401	-	ABC-2 type transporter
1332	 58.11	0	1330990..1333758	-	922	163843609	-	BSUIS_A1402	-	ABC transporter related
1333	 61.05	0	1333755..1334822	-	355	163843610	-	BSUIS_A1403	-	HlyD family secretion protein
1334	 52.22	-1	1334802..1334981	+	59	163843611	-	BSUIS_A1404	-	hypothetical protein
1335	 54.63	0	1335368..1336663	-	431	163843612	-	BSUIS_A1405	-	hypothetical protein
1336	 54.80	0	1337242..1337418	-	58	163843613	-	BSUIS_A1406	-	hypothetical protein
1337	 56.77	0	1337478..1337780	+	100	163843614	ureA	BSUIS_A1407	-	urease subunit gamma
1338	 57.71	0	1337829..1338308	+	159	163843615	ureB	BSUIS_A1408	-	urease subunit beta
1339	 59.23	0	1338348..1340069	+	573	163843616	ureC	BSUIS_A1409	-	urease subunit alpha
1340	 58.91	0	1340117..1340722	+	201	163843617	ureE	BSUIS_A1410	-	urease accessory protein UreE
1341	 58.74	0	1340694..1341425	+	243	163843618	ureF	BSUIS_A1411	-	urease accessory protein ureF
1342	 60.19	0	1342998..1344047	+	349	163843619	-	BSUIS_A1414	-	Urea transporter, kidney
1343	 57.44	0	1344074..1344832	+	252	163843620	-	BSUIS_A1415	-	ABC cobalt transporter, periplasmic binding protein CbiN
1344	 61.64	+1	1344852..1345487	+	211	163843621	-	BSUIS_A1416	-	cobalt transport protein CbiM
1345	 62.52	+1	1345484..1346110	+	208	163843622	-	BSUIS_A1417	-	CbiL protein
1346	 60.00	0	1346107..1346871	+	254	163843623	cbiQ	BSUIS_A1418	-	cobalt ABC transporter, permease protein CbiQ
1347	 57.36	0	1346868..1347587	+	239	163843624	-	BSUIS_A1419	-	hypothetical protein
1348	 57.69	0	1347608..1348420	-	270	163843625	crcB	BSUIS_A1420	-	camphor resistance protein CrcB
1349	 56.92	0	1348433..1348822	-	129	163843626	crcB	BSUIS_A1421	-	camphor resistance protein CrcB
1350	 56.43	0	1349091..1350116	+	341	163843627	-	BSUIS_A1422	-	hypothetical protein
1351	 51.95	-1	1350249..1350683	-	144	163843628	-	BSUIS_A1423	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1352	 47.83	-2	1350685..1350822	+	45	163843629	-	BSUIS_A1424	-	hypothetical protein
1353	 57.93	0	1350835..1351761	-	308	163843630	-	BSUIS_A1425	-	PhzF family phenazine biosynthesis protein
1354	 58.47	0	1351866..1352597	-	243	163843631	-	BSUIS_A1426	-	NUDIX hydrolase
1355	 54.84	0	1353803..1354318	+	171	163843632	-	BSUIS_A1428	-	BA14K family protein
1356	 57.34	0	1354364..1355596	-	410	163843633	-	BSUIS_A1429	-	GntR family transcriptional regulator
1357	 49.65	-1	1355729..1356010	-	93	163843634	-	BSUIS_A1430	-	hypothetical protein
1358	 57.75	0	1356120..1357139	-	339	163843635	ilvC	BSUIS_A1431	-	ketol-acid reductoisomerase
1359	 60.12	0	1357195..1357836	-	213	163843636	-	BSUIS_A1432	-	TetR family transcriptional regulator
1360	 58.18	0	1358047..1360002	-	651	163843637	kup	BSUIS_A1433	-	potassium transport system protein kup
1361	 57.23	0	1360145..1360303	-	52	163843638	-	BSUIS_A1434	-	hypothetical protein
1362	 59.51	0	1360372..1361112	-	246	163843639	pdxJ	BSUIS_A1435	-	pyridoxal phosphate biosynthetic protein PdxJ
1363	 53.48	0	1361409..1361810	+	133	163843640	-	BSUIS_A1436	-	hypothetical protein
1364	 57.84	0	1361811..1362977	-	388	163843641	-	BSUIS_A1437	-	hypothetical protein
1365	 52.38	-1	1362931..1363077	+	48	163843642	-	BSUIS_A1438	-	hypothetical protein
1366	 58.46	0	1363116..1363688	-	190	163843643	ilvN	BSUIS_A1439	-	acetolactate synthase 3 regulatory subunit
1367	 58.44	0	1363707..1365530	-	607	163843644	ilvB	BSUIS_A1440	-	acetolactate synthase 3 catalytic subunit
1368	 59.38	0	1365778..1366710	-	310	163843645	miaA	BSUIS_A1441	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1369	 60.22	0	1366728..1367627	+	299	163843646	serB	BSUIS_A1442	-	phosphoserine phosphatase SerB
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.