IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1234	 56.70	0	1236746..1237447	-	233	163843511	rplA	BSUIS_A1294	-	50S ribosomal protein L1
1235	 58.04	0	1237452..1237880	-	142	163843512	rplK	BSUIS_A1295	-	50S ribosomal protein L11
1236	 52.08	-1	1238083..1238610	-	175	163843513	nusG	BSUIS_A1296	-	transcription antitermination protein NusG
1237	 53.73	0	1238634..1238834	-	66	163843514	secE	BSUIS_A1297	-	preprotein translocase subunit SecE
1238	 58.93	0	1239508..1240683	-	391	163843515	tuf	BSUIS_A1299	-	elongation factor Tu
1239	 54.73	0	1240634..1240834	+	66	163843516	-	BSUIS_A1300	-	hypothetical protein
1240	 61.09	0	1241314..1242174	+	286	163843517	-	BSUIS_A1303	-	RNA methyltransferase
1241	 54.43	0	1242235..1242708	-	157	163843518	-	BSUIS_A1304	-	CBS domain-containing protein
1242	 57.48	0	1242837..1243598	-	253	163843519	-	BSUIS_A1305	-	rhomboid family protein
1243	 58.72	0	1243957..1244598	+	213	163843520	-	BSUIS_A1306	-	hypothetical protein
1244	 59.74	0	1244842..1245447	+	201	163843521	-	BSUIS_A1307	-	transglutaminase family protein cysteine peptidase BTLCP
1245	 57.58	0	1245526..1246053	-	175	163843522	-	BSUIS_A1308	-	hypothetical protein
1246	 48.63	-1	1246324..1246578	-	84	163843523	-	BSUIS_A1309	-	hypothetical protein
1247	 57.82	0	1246826..1247650	-	274	163843524	cysE	BSUIS_A1310	-	serine O-acetyltransferase
1248	 50.41	-1	1247666..1247788	+	40	163843525	-	BSUIS_A1311	-	hypothetical protein
1249	 58.37	0	1247825..1248595	-	256	163843526	-	BSUIS_A1312	-	alpha/beta hydrolase fold
1250	 54.37	0	1248629..1249108	-	159	163843527	-	BSUIS_A1313	-	hypothetical protein
1251	 51.22	-1	1249315..1249437	-	40	163843528	-	BSUIS_A1314	-	hypothetical protein
1252	 59.62	0	1249482..1250063	-	193	163843529	cspG	BSUIS_A1315	-	cold shock-like protein cspG
1253	 44.20	-2	1250187..1250324	-	45	163843530	-	BSUIS_A1316	-	hypothetical protein
1254	 58.50	0	1250426..1250866	+	146	163843531	-	BSUIS_A1317	-	glyoxalase/bleomycin resistance protein/dioxygenase
1255	 61.81	+1	1250918..1251946	-	342	163843532	-	BSUIS_A1318	-	import inner membrane translocase subunit Tim44
1256	 61.62	+1	1252108..1253892	-	594	163843533	recJ	BSUIS_A1319	-	single-stranded-DNA-specific exonuclease RecJ
1257	 53.86	0	1253942..1255003	-	353	163843534	-	BSUIS_A1320	-	D-alanine--D-alanine ligase
1258	 45.39	-2	1255032..1255172	+	46	163843535	-	BSUIS_A1321	-	hypothetical protein
1259	 61.20	0	1255306..1256292	-	328	163843536	glpX	BSUIS_A1322	-	fructose 1,6-bisphosphatase II
1260	 58.79	0	1256676..1257995	-	439	163843537	-	BSUIS_A1323	-	homoserine dehydrogenase
1261	 55.26	0	1257988..1258101	-	37	163843538	-	BSUIS_A1324	-	hypothetical protein
1262	 58.64	0	1258131..1259351	-	406	163843539	-	BSUIS_A1325	-	aminotransferase
1263	 62.07	+1	1259482..1259829	-	115	163843540	-	BSUIS_A1326	-	hypothetical protein
1264	 54.41	0	1260257..1260460	-	67	163843541	-	BSUIS_A1327	-	hypothetical protein
1265	 59.38	0	1261214..1261597	+	127	163843542	-	BSUIS_A1328	-	peptidase M15A
1266	 55.79	0	1261986..1262270	+	94	163843543	-	BSUIS_A1330	-	hypothetical protein
1267	 58.02	0	1262593..1263309	+	238	163843544	sfsA	BSUIS_A1331	-	sugar fermentation stimulation protein A
1268	 57.37	0	1263309..1264136	+	275	163843545	map	BSUIS_A1332	-	methionine aminopeptidase
1269	 60.27	0	1264192..1264941	+	249	163843546	-	BSUIS_A1333	-	DNA repair protein RadC
1270	 58.53	0	1265143..1265781	+	212	163843547	ropB	BSUIS_A1334	-	22 kDa outer membrane protein precursor
1271	 61.03	0	1266070..1267275	-	401	163843548	cbiE	BSUIS_A1335	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
1272	 58.87	0	1267349..1268644	+	431	163843549	cobG	BSUIS_A1336	-	precorrin-3B synthase
1273	 62.36	+1	1268654..1269280	+	208	163843550	cobH	BSUIS_A1337	-	precorrin-8X methylmutase
1274	 59.05	0	1269280..1270014	+	244	163843551	cobI	BSUIS_A1338	-	precorrin-2 C(20)-methyltransferase
1275	 60.48	0	1269960..1271705	+	581	163843552	cobJ	BSUIS_A1339	-	precorrin-3B C17-methyltransferase
1276	 61.75	+1	1271761..1272228	-	155	163843553	-	BSUIS_A1340	-	hypothetical protein
1277	 55.74	0	1272353..1273249	-	298	163843554	-	BSUIS_A1341	-	phospholipase/carboxylesterase
1278	 56.70	0	1273253..1273774	-	173	163843555	hpaC	BSUIS_A1342	-	4-hydroxyphenylacetate 3-monooxygenase reductase component
1279	 58.84	0	1273823..1275010	+	395	163843556	-	BSUIS_A1343	-	extracellular ligand-binding receptor
1280	 58.94	0	1274996..1275979	-	327	163843557	cobD	BSUIS_A1344	-	cobalamin biosynthesis protein
1281	 60.76	0	1276016..1277014	-	332	163843558	cobC	BSUIS_A1345	-	threonine-phosphate decarboxylase
1282	 60.26	0	1277011..1278321	-	436	163843559	cobB	BSUIS_A1346	-	cobyrinic acid a,c-diamide synthase
1283	 62.00	+1	1278318..1279196	-	292	163843560	cobA	BSUIS_A1347	-	uroporphyrin-III C-methyltransferase
1284	 61.45	+1	1280351..1281097	+	248	163843561	cobK	BSUIS_A1349	-	cobalt-precorrin-6x reductase
1285	 58.50	0	1281086..1281844	-	252	163843562	cobM	BSUIS_A1350	-	precorrin-4 C11-methyltransferase
1286	 58.33	0	1281904..1282299	-	131	163843563	cobE	BSUIS_A1351	-	protein cobE
1287	 54.59	0	1282292..1282738	-	148	163843564	-	BSUIS_A1352	-	hypothetical protein
1288	 59.54	0	1282898..1283683	+	261	163843565	-	BSUIS_A1353	-	hypothetical protein
1289	 59.91	0	1283680..1284108	-	142	163843566	-	BSUIS_A1354	-	hypothetical protein
1290	 55.87	0	1284108..1284746	-	212	163843567	cobO	BSUIS_A1355	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1291	 62.47	+1	1284739..1288530	-	1263	163843568	cobN	BSUIS_A1356	-	cobaltochelatase
1292	 57.62	0	1288530..1289579	-	349	163843569	cobW	BSUIS_A1357	-	cobalamin biosynthesis protein CobW
1293	 60.15	0	1289583..1290104	-	173	163843570	cobP	BSUIS_A1358	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1294	 61.23	0	1290110..1290826	-	238	163843571	cbtA	BSUIS_A1359	-	cobalt transporter subunit CbtA (proposed)
1295	 57.14	0	1290915..1291103	-	62	163843572	cbtB	BSUIS_A1360	-	cobalt transporter subunit CbtB (proposed)
1296	 60.54	0	1291417..1292868	-	483	163843573	cobQ	BSUIS_A1362	-	cobyric acid synthase
1297	 50.54	-1	1292879..1293064	-	61	163843574	-	BSUIS_A1363	-	hypothetical protein
1298	 60.49	0	1294333..1295223	+	296	163843575	mmsB	BSUIS_A1365	-	3-hydroxyisobutyrate dehydrogenase
1299	 45.83	-2	1295459..1295626	-	55	163843576	-	BSUIS_A1366	-	hypothetical protein
1300	 58.85	0	1295933..1296853	-	306	163843577	pecT	BSUIS_A1367	-	HTH-type transcriptional regulator pecT
1301	 57.56	0	1297299..1298297	+	332	163843578	-	BSUIS_A1368	-	hypothetical protein
1302	 58.67	0	1298563..1301124	+	853	163843579	-	BSUIS_A1369	-	dimethylglycine dehydrogenase
1303	 55.67	0	1301210..1301500	-	96	163843580	-	BSUIS_A1370	-	hypothetical protein
1304	 57.14	0	1301607..1304189	-	860	163843581	-	BSUIS_A1371	-	MscS mechanosensitive ion channel
1305	 56.41	0	1304313..1304897	-	194	163843582	-	BSUIS_A1372	-	hypothetical protein
1306	 59.62	0	1304373..1304840	+	155	163843583	-	BSUIS_A1373	-	hypothetical protein
1307	 59.34	0	1304949..1307486	+	845	163843584	secD	BSUIS_A1374	-	bifunctional preprotein translocase subunit SecD/SecF
1308	 59.41	0	1307564..1309423	+	619	163843585	-	BSUIS_A1375	-	potassium efflux system protein
1309	 55.56	0	1309423..1310394	+	323	163843586	-	BSUIS_A1376	-	hypothetical protein
1310	 60.89	0	1310621..1311226	+	201	163843587	-	BSUIS_A1377	-	hypothetical protein
1311	 56.44	0	1311272..1312102	-	276	163843588	cysW	BSUIS_A1378	-	sulfate ABC transporter, permease protein CysW
1312	 58.56	0	1312089..1312952	-	287	163843589	cysT	BSUIS_A1379	-	sulfate ABC transporter, permease protein CysT
1313	 55.52	0	1313079..1314083	-	334	163843590	-	BSUIS_A1380	-	sulfate ABC transporter, sulfate-binding protein
1314	 52.69	-1	1314349..1314534	-	61	163843591	-	BSUIS_A1381	-	hypothetical protein
1315	 58.95	0	1314714..1316282	-	522	163843592	-	BSUIS_A1382	-	integral membrane protein TerC
1316	 59.73	0	1316700..1317362	-	220	163843593	-	BSUIS_A1383	-	SNARE associated Golgi protein
1317	 53.12	0	1317438..1317533	+	31	163843594	-	BSUIS_A1384	-	hypothetical protein
1318	 45.83	-2	1317665..1317832	-	55	163843595	-	BSUIS_A1385	-	hypothetical protein
1319	 53.52	0	1318260..1318799	+	179	163843596	-	BSUIS_A1388	-	hypothetical protein
1320	 54.61	0	1318933..1319355	-	140	163843597	-	BSUIS_A1389	-	RbsD or FucU transport
1321	 59.38	0	1319448..1320257	-	269	163843598	-	BSUIS_A1390	-	short chain dehydrogenase
1322	 58.46	0	1320272..1321051	-	259	163843599	-	BSUIS_A1391	-	hypothetical protein
1323	 59.93	0	1321065..1322192	-	375	163843600	-	BSUIS_A1392	-	monosaccharide-transporting ATPase
1324	 59.68	0	1322479..1323408	-	309	163843601	-	BSUIS_A1393	-	periplasmic binding protein/LacI transcriptional regulator
1325	 57.53	0	1323788..1324903	+	371	163843602	cbaC	BSUIS_A1394	-	1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase
1326	 62.16	+1	1324900..1325676	-	258	163843603	cbrD	BSUIS_A1395	-	achromobactin transport ATP-binding protein CbrD
1327	 62.08	+1	1325673..1326674	-	333	163843604	-	BSUIS_A1396	-	transport system permease protein
1328	 60.60	0	1326667..1327506	-	279	163843605	-	BSUIS_A1397	-	periplasmic binding protein
1329	 56.36	0	1327520..1329382	-	620	163843606	-	BSUIS_A1398	-	TonB-dependent receptor
1330	 53.21	0	1329671..1329826	-	51	163843607	-	BSUIS_A1400	-	hypothetical protein
1331	 57.50	0	1329876..1330988	-	370	163843608	-	BSUIS_A1401	-	ABC-2 type transporter
1332	 58.11	0	1330990..1333758	-	922	163843609	-	BSUIS_A1402	-	ABC transporter related
1333	 61.05	0	1333755..1334822	-	355	163843610	-	BSUIS_A1403	-	HlyD family secretion protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.