IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1185	 58.29	0	1193625..1194209	+	194	163843462	-	BSUIS_A1245	-	PfpI family intracellular peptidase
1186	 57.91	0	1194298..1194708	+	136	163843463	-	BSUIS_A1246	-	hypothetical protein
1187	 57.28	0	1194836..1196050	+	404	163843464	-	BSUIS_A1247	-	isocitrate dehydrogenase
1188	 58.09	0	1196272..1197717	+	481	163843465	phoA	BSUIS_A1248	-	bacterial alkaline phosphatase
1189	 58.77	0	1197869..1200526	-	885	163843466	alaS	BSUIS_A1249	-	alanyl-tRNA synthetase
1190	 56.91	0	1200919..1202004	-	361	163843467	recA	BSUIS_A1250	-	recombinase A
1191	 48.41	-2	1202174..1202299	-	41	163843468	-	BSUIS_A1251	-	hypothetical protein
1192	 59.58	0	1202335..1202997	-	220	163843469	-	BSUIS_A1252	-	OmpA/MotB domain-containing protein
1193	 56.07	0	1203084..1203668	-	194	163843470	-	BSUIS_A1253	-	lytic transglycosylase catalytic
1194	 59.97	0	1203792..1205105	-	437	163843471	-	BSUIS_A1254	-	recombination factor protein RarA
1195	 58.95	0	1205252..1206676	-	474	163843472	degP	BSUIS_A1255	-	protease Do
1196	 58.04	0	1206956..1207384	-	142	163843473	rplQ	BSUIS_A1256	-	50S ribosomal protein L17
1197	 57.20	0	1207546..1208559	-	337	163843474	rpoA	BSUIS_A1257	-	DNA-directed RNA polymerase subunit alpha
1198	 61.79	+1	1208675..1209064	-	129	163843475	rpsK	BSUIS_A1258	-	30S ribosomal protein S11
1199	 56.91	0	1209192..1209560	-	122	163843476	rpsM	BSUIS_A1259	-	30S ribosomal protein S13
1200	 49.43	-1	1209554..1209727	+	57	163843477	-	BSUIS_A1260	-	hypothetical protein
1201	 59.15	0	1209870..1210454	-	194	163843478	-	BSUIS_A1261	-	adenylate kinase
1202	 55.18	0	1210451..1211791	-	446	163843479	secY	BSUIS_A1262	-	preprotein translocase subunit SecY
1203	 59.66	0	1211952..1212422	-	156	163843480	rplO	BSUIS_A1263	-	50S ribosomal protein L15
1204	 58.59	0	1212443..1212640	-	65	163843481	rpmD	BSUIS_A1264	-	50S ribosomal protein L30
1205	 60.25	0	1212758..1213318	-	186	163843482	rpsE	BSUIS_A1265	-	30S ribosomal protein S5
1206	 61.98	+1	1213360..1213722	-	120	163843483	rplR	BSUIS_A1266	-	50S ribosomal protein L18
1207	 57.49	0	1213735..1214268	-	177	163843484	rplF	BSUIS_A1267	-	50S ribosomal protein L6
1208	 57.89	0	1214307..1214705	-	132	163843485	rpsH	BSUIS_A1268	-	30S ribosomal protein S8
1209	 57.84	0	1214716..1215021	-	101	163843486	-	BSUIS_A1269	-	30S ribosomal protein S14
1210	 54.84	0	1215049..1215606	-	185	163843487	rplE	BSUIS_A1270	-	50S ribosomal protein L5
1211	 57.05	0	1215599..1215910	-	103	163843488	rplX	BSUIS_A1271	-	50S ribosomal protein L24
1212	 54.74	0	1215923..1216291	-	122	163843489	rplN	BSUIS_A1272	-	50S ribosomal protein L14
1213	 53.50	0	1216360..1216602	-	80	163843490	rpsQ	BSUIS_A1273	-	30S ribosomal protein S17
1214	 58.21	0	1216615..1216815	-	66	163843491	rpmC	BSUIS_A1274	-	50S ribosomal protein L29
1215	 58.21	0	1216828..1217241	-	137	163843492	rplP	BSUIS_A1275	-	50S ribosomal protein L16
1216	 57.24	0	1217280..1217990	-	236	163843493	rpsC	BSUIS_A1276	-	30S ribosomal protein S3
1217	 58.85	0	1217990..1218373	-	127	163843494	rplV	BSUIS_A1277	-	50S ribosomal protein L22
1218	 54.48	0	1218376..1218654	-	92	163843495	rpsS	BSUIS_A1278	-	30S ribosomal protein S19
1219	 59.95	0	1218670..1219503	-	277	163843496	rplB	BSUIS_A1279	-	50S ribosomal protein L2
1220	 57.14	0	1219525..1219818	-	97	163843497	rplW	BSUIS_A1280	-	50S ribosomal protein L23
1221	 60.39	0	1219815..1220435	-	206	163843498	rplD	BSUIS_A1281	-	50S ribosomal protein L4
1222	 58.54	0	1220435..1221148	-	237	163843499	rplC	BSUIS_A1282	-	50S ribosomal protein L3
1223	 57.61	0	1221178..1221486	-	102	163843500	rpsJ	BSUIS_A1283	-	30S ribosomal protein S10
1224	 58.84	0	1221547..1222722	-	391	163843501	tuf	BSUIS_A1284	-	elongation factor Tu
1225	 56.98	0	1222786..1224870	-	694	163843502	fusA	BSUIS_A1285	-	elongation factor G
1226	 57.32	0	1224901..1225371	-	156	163843503	rpsG	BSUIS_A1286	-	30S ribosomal protein S7
1227	 57.53	0	1225438..1225809	-	123	163843504	rpsL	BSUIS_A1287	-	30S ribosomal protein S12
1228	 51.85	-1	1225899..1226033	-	44	163843505	-	BSUIS_A1288	-	hypothetical protein
1229	 52.42	-1	1226241..1226612	+	123	163843506	-	BSUIS_A1289	-	hypothetical protein
1230	 58.01	0	1226719..1230921	-	1400	163843507	rpoC	BSUIS_A1290	-	DNA-directed RNA polymerase subunit beta'
1231	 57.74	0	1231070..1235203	-	1377	163843508	rpoB	BSUIS_A1291	-	DNA-directed RNA polymerase subunit beta
1232	 59.20	0	1235411..1235785	-	124	163843509	rplL	BSUIS_A1292	-	50S ribosomal protein L7/L12
1233	 58.57	0	1235837..1236355	-	172	163843510	rplJ	BSUIS_A1293	-	50S ribosomal protein L10
1234	 56.70	0	1236746..1237447	-	233	163843511	rplA	BSUIS_A1294	-	50S ribosomal protein L1
1235	 58.04	0	1237452..1237880	-	142	163843512	rplK	BSUIS_A1295	-	50S ribosomal protein L11
1236	 52.08	-1	1238083..1238610	-	175	163843513	nusG	BSUIS_A1296	-	transcription antitermination protein NusG
1237	 53.73	0	1238634..1238834	-	66	163843514	secE	BSUIS_A1297	-	preprotein translocase subunit SecE
1238	 58.93	0	1239508..1240683	-	391	163843515	tuf	BSUIS_A1299	-	elongation factor Tu
1239	 54.73	0	1240634..1240834	+	66	163843516	-	BSUIS_A1300	-	hypothetical protein
1240	 61.09	0	1241314..1242174	+	286	163843517	-	BSUIS_A1303	-	RNA methyltransferase
1241	 54.43	0	1242235..1242708	-	157	163843518	-	BSUIS_A1304	-	CBS domain-containing protein
1242	 57.48	0	1242837..1243598	-	253	163843519	-	BSUIS_A1305	-	rhomboid family protein
1243	 58.72	0	1243957..1244598	+	213	163843520	-	BSUIS_A1306	-	hypothetical protein
1244	 59.74	0	1244842..1245447	+	201	163843521	-	BSUIS_A1307	-	transglutaminase family protein cysteine peptidase BTLCP
1245	 57.58	0	1245526..1246053	-	175	163843522	-	BSUIS_A1308	-	hypothetical protein
1246	 48.63	-1	1246324..1246578	-	84	163843523	-	BSUIS_A1309	-	hypothetical protein
1247	 57.82	0	1246826..1247650	-	274	163843524	cysE	BSUIS_A1310	-	serine O-acetyltransferase
1248	 50.41	-1	1247666..1247788	+	40	163843525	-	BSUIS_A1311	-	hypothetical protein
1249	 58.37	0	1247825..1248595	-	256	163843526	-	BSUIS_A1312	-	alpha/beta hydrolase fold
1250	 54.37	0	1248629..1249108	-	159	163843527	-	BSUIS_A1313	-	hypothetical protein
1251	 51.22	-1	1249315..1249437	-	40	163843528	-	BSUIS_A1314	-	hypothetical protein
1252	 59.62	0	1249482..1250063	-	193	163843529	cspG	BSUIS_A1315	-	cold shock-like protein cspG
1253	 44.20	-2	1250187..1250324	-	45	163843530	-	BSUIS_A1316	-	hypothetical protein
1254	 58.50	0	1250426..1250866	+	146	163843531	-	BSUIS_A1317	-	glyoxalase/bleomycin resistance protein/dioxygenase
1255	 61.81	+1	1250918..1251946	-	342	163843532	-	BSUIS_A1318	-	import inner membrane translocase subunit Tim44
1256	 61.62	+1	1252108..1253892	-	594	163843533	recJ	BSUIS_A1319	-	single-stranded-DNA-specific exonuclease RecJ
1257	 53.86	0	1253942..1255003	-	353	163843534	-	BSUIS_A1320	-	D-alanine--D-alanine ligase
1258	 45.39	-2	1255032..1255172	+	46	163843535	-	BSUIS_A1321	-	hypothetical protein
1259	 61.20	0	1255306..1256292	-	328	163843536	glpX	BSUIS_A1322	-	fructose 1,6-bisphosphatase II
1260	 58.79	0	1256676..1257995	-	439	163843537	-	BSUIS_A1323	-	homoserine dehydrogenase
1261	 55.26	0	1257988..1258101	-	37	163843538	-	BSUIS_A1324	-	hypothetical protein
1262	 58.64	0	1258131..1259351	-	406	163843539	-	BSUIS_A1325	-	aminotransferase
1263	 62.07	+1	1259482..1259829	-	115	163843540	-	BSUIS_A1326	-	hypothetical protein
1264	 54.41	0	1260257..1260460	-	67	163843541	-	BSUIS_A1327	-	hypothetical protein
1265	 59.38	0	1261214..1261597	+	127	163843542	-	BSUIS_A1328	-	peptidase M15A
1266	 55.79	0	1261986..1262270	+	94	163843543	-	BSUIS_A1330	-	hypothetical protein
1267	 58.02	0	1262593..1263309	+	238	163843544	sfsA	BSUIS_A1331	-	sugar fermentation stimulation protein A
1268	 57.37	0	1263309..1264136	+	275	163843545	map	BSUIS_A1332	-	methionine aminopeptidase
1269	 60.27	0	1264192..1264941	+	249	163843546	-	BSUIS_A1333	-	DNA repair protein RadC
1270	 58.53	0	1265143..1265781	+	212	163843547	ropB	BSUIS_A1334	-	22 kDa outer membrane protein precursor
1271	 61.03	0	1266070..1267275	-	401	163843548	cbiE	BSUIS_A1335	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
1272	 58.87	0	1267349..1268644	+	431	163843549	cobG	BSUIS_A1336	-	precorrin-3B synthase
1273	 62.36	+1	1268654..1269280	+	208	163843550	cobH	BSUIS_A1337	-	precorrin-8X methylmutase
1274	 59.05	0	1269280..1270014	+	244	163843551	cobI	BSUIS_A1338	-	precorrin-2 C(20)-methyltransferase
1275	 60.48	0	1269960..1271705	+	581	163843552	cobJ	BSUIS_A1339	-	precorrin-3B C17-methyltransferase
1276	 61.75	+1	1271761..1272228	-	155	163843553	-	BSUIS_A1340	-	hypothetical protein
1277	 55.74	0	1272353..1273249	-	298	163843554	-	BSUIS_A1341	-	phospholipase/carboxylesterase
1278	 56.70	0	1273253..1273774	-	173	163843555	hpaC	BSUIS_A1342	-	4-hydroxyphenylacetate 3-monooxygenase reductase component
1279	 58.84	0	1273823..1275010	+	395	163843556	-	BSUIS_A1343	-	extracellular ligand-binding receptor
1280	 58.94	0	1274996..1275979	-	327	163843557	cobD	BSUIS_A1344	-	cobalamin biosynthesis protein
1281	 60.76	0	1276016..1277014	-	332	163843558	cobC	BSUIS_A1345	-	threonine-phosphate decarboxylase
1282	 60.26	0	1277011..1278321	-	436	163843559	cobB	BSUIS_A1346	-	cobyrinic acid a,c-diamide synthase
1283	 62.00	+1	1278318..1279196	-	292	163843560	cobA	BSUIS_A1347	-	uroporphyrin-III C-methyltransferase
1284	 61.45	+1	1280351..1281097	+	248	163843561	cobK	BSUIS_A1349	-	cobalt-precorrin-6x reductase
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.