IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
71	 53.52	0	81492..82229	+	245	163842348	-	BSUIS_A0076	-	invasion associated locus B family protein
72	 58.23	0	82308..83528	-	406	163842349	argG	BSUIS_A0077	-	argininosuccinate synthase
73	 57.54	0	84378..84881	-	167	163842350	-	BSUIS_A0079	-	hypothetical protein
74	 59.14	0	84915..86150	-	411	163842351	-	BSUIS_A0080	-	radical SAM protein
75	 50.52	-1	86094..86285	+	63	163842352	-	BSUIS_A0081	-	hypothetical protein
76	 55.38	0	86270..86464	+	64	163842353	-	BSUIS_A0082	-	hypothetical protein
77	 57.54	0	86410..86913	-	167	163842354	-	BSUIS_A0083	-	hypothetical protein
78	 61.58	+1	87238..87768	-	176	163842355	-	BSUIS_A0084	-	hypothetical protein
79	 54.76	0	87856..88149	-	97	163842356	-	BSUIS_A0085	-	pterin-4-alpha-carbinolamine dehydratase
80	 55.61	0	88376..88981	+	201	163842357	-	BSUIS_A0086	-	protein tyrosine phosphatase
81	 61.25	0	88891..89481	-	196	163842358	-	BSUIS_A0087	-	2'-5' RNA ligase
82	 55.92	0	89662..90387	-	241	163842359	-	BSUIS_A0088	-	arylesterase precursor
83	 61.73	+1	90534..91262	+	242	163842360	-	BSUIS_A0089	-	ABC transporter related
84	 61.65	+1	91259..93808	+	849	163842361	-	BSUIS_A0090	-	hypothetical protein
85	 57.99	0	94044..94781	+	245	163842362	-	BSUIS_A0092	-	hypothetical protein
86	 59.44	0	94896..95435	+	179	163842363	pat	BSUIS_A0093	-	phosphinothricin N-acetyltransferase
87	 54.73	0	95455..95856	-	133	163842364	-	BSUIS_A0094	-	hypothetical protein
88	 57.01	0	96406..97140	-	244	163842365	-	BSUIS_A0095	-	hypothetical protein
89	 56.74	0	97293..97433	-	46	163842366	-	BSUIS_A0096	-	hypothetical protein
90	 60.27	0	97417..100104	-	895	163842367	acnA	BSUIS_A0097	-	aconitate hydratase
91	 58.33	0	100448..101095	+	215	163842368	ccmA	BSUIS_A0098	-	cytochrome c biogenesis protein CcmA
92	 62.01	+1	101095..101760	+	221	163842369	ccmB	BSUIS_A0099	-	heme exporter protein CcmB
93	 58.52	0	101818..102603	+	261	163842370	ccmC	BSUIS_A0100	-	heme exporter protein CcmC
94	 56.90	0	102600..102773	+	57	163842371	-	BSUIS_A0101	-	Heme exporter protein D (CcmD)
95	 59.31	0	102770..103381	+	203	163842372	dsbE	BSUIS_A0102	-	DsbE subfamily periplasmic protein thiol:disulfide oxidoreductase
96	 61.00	0	103630..105465	-	611	163842373	ilvD	BSUIS_A0103	-	dihydroxy-acid dehydratase
97	 54.35	0	105647..105784	+	45	163842374	-	BSUIS_A0104	-	hypothetical protein
98	 61.57	+1	105865..106296	-	143	163842375	-	BSUIS_A0105	-	hypothetical protein
99	 59.79	0	106323..106700	-	125	163842376	-	BSUIS_A0106	-	response regulator receiver protein
100	 49.37	-1	106875..107111	-	78	163842377	-	BSUIS_A0107	-	AsnC family transcriptional regulator
101	 57.04	0	107764..108168	+	134	163842378	-	BSUIS_A0108	-	hypothetical protein
102	 57.02	0	108254..108958	-	234	163842379	-	BSUIS_A0109	-	hypothetical protein
103	 53.97	0	109031..109849	+	272	163842380	-	BSUIS_A0110	-	hypothetical protein
104	 57.63	0	110127..111155	+	342	163842381	-	BSUIS_A0111	-	sulfate ABC transporter, sulfate-binding protein
105	 59.25	0	111199..112128	-	309	163842382	-	BSUIS_A0112	-	hypothetical protein
106	 59.40	0	111250..112116	+	288	163842383	cysT	BSUIS_A0113	-	sulfate ABC transporter, permease protein CysT
107	 58.94	0	112106..112972	+	288	163842384	cysW	BSUIS_A0114	-	sulfate ABC transporter, permease protein CysW
108	 61.39	+1	113070..114149	+	359	163842385	cysA	BSUIS_A0115	-	sulfate ABC transporter, ATP-binding protein
109	 60.52	0	114535..123138	+	2867	163842386	-	BSUIS_A0116	-	glycosyltransferase 36
110	 58.31	0	123228..124532	+	434	163842387	pncB	BSUIS_A0117	-	nicotinate phosphoribosyltransferase
111	 60.65	0	124574..125404	-	276	163842388	-	BSUIS_A0118	-	PhzF family phenazine biosynthesis protein
112	 55.77	0	125514..126302	-	262	163842389	-	BSUIS_A0119	-	methyltransferase type 11
113	 59.55	0	126325..127251	-	308	163842390	frk	BSUIS_A0120	-	fructokinase
114	 59.60	0	127342..128148	-	268	163842391	-	BSUIS_A0121	-	short-chain dehydrogenase/reductase SDR
115	 60.03	0	128269..130560	-	763	163842392	-	BSUIS_A0122	-	1A family penicillin-binding protein
116	 56.13	0	130765..131457	-	230	163842393	ropB	BSUIS_A0123	-	22 kDa outer membrane protein precursor
117	 56.19	0	131725..132411	-	228	163842394	ropB	BSUIS_A0124	-	22 kDa outer membrane protein precursor
118	 56.47	0	132643..133260	-	205	163842395	-	BSUIS_A0125	-	hypothetical protein
119	 59.53	0	133299..134714	-	471	163842396	-	BSUIS_A0126	-	hypothetical protein
120	 52.61	-1	134945..135193	+	82	163842397	-	BSUIS_A0127	-	hypothetical protein
121	 59.45	0	135275..138211	+	978	163842398	polA	BSUIS_A0128	-	DNA polymerase I
122	 60.07	0	138353..140233	+	626	163842399	ydbR	BSUIS_A0129	-	DEAD-box ATP-dependent RNA helicase ydbR
123	 59.79	0	140329..142770	-	813	163842400	gyrB	BSUIS_A0130	-	DNA gyrase subunit B
124	 50.00	-1	142821..142988	-	55	163842401	-	BSUIS_A0131	-	hypothetical protein
125	 64.54	+1	143410..145431	+	673	163842402	hrpB	BSUIS_A0132	-	ATP-dependent helicase HrpB
126	 60.94	0	145526..146818	+	430	163842403	regB	BSUIS_A0133	-	sensor histidine kinase regB
127	 58.54	0	146888..147256	+	122	163842404	-	BSUIS_A0134	-	transposase for insertion sequence element IS6501
128	 58.01	0	146910..147221	+	103	163842405	-	BSUIS_A0135	-	IS711, transposase orfA
129	 50.13	-1	147253..147645	+	130	163842406	-	BSUIS_A0136	-	transposase for insertion sequence element IS6501
130	 51.03	-1	147711..148049	+	112	163842407	-	BSUIS_A0137	-	hypothetical protein
131	 60.46	0	148245..148808	+	187	163842408	regA	BSUIS_A0138	-	photosynthetic apparatus regulatory protein regA
132	 63.70	+1	148814..149116	-	100	163842409	-	BSUIS_A0139	-	hypothetical protein
133	 57.33	0	149578..150198	+	206	163842410	-	BSUIS_A0140	-	ErfK/YbiS/YcfS/YnhG family protein
134	 59.69	0	150288..150860	-	190	163842411	-	BSUIS_A0141	-	HIRA-interacting protein 5
135	 60.93	0	150969..151508	-	179	163842412	-	BSUIS_A0142	-	UspA domain-containing protein
136	 59.41	0	151515..152672	-	385	163842413	trpS	BSUIS_A0143	-	tryptophanyl-tRNA synthetase
137	 59.87	0	152679..154268	-	529	163842414	mviN	BSUIS_A0144	-	integral membrane protein MviN
138	 58.54	0	154282..157086	-	934	163842415	glnD	BSUIS_A0145	-	PII uridylyl-transferase
139	 45.83	-2	157152..157247	+	31	163842416	-	BSUIS_A0146	-	hypothetical protein
140	 60.48	0	159679..162411	+	910	163842417	mutS	BSUIS_A0148	-	DNA mismatch repair protein
141	 58.39	0	162717..163610	-	297	163842418	-	BSUIS_A0149	-	hypothetical protein
142	 52.80	0	163885..164367	-	160	163842419	lspA	BSUIS_A0150	-	signal peptidase II
143	 60.18	0	164369..165262	-	297	163842420	-	BSUIS_A0151	-	tRNA/rRNA methyltransferase (SpoU)
144	 61.08	0	165259..166404	-	381	163842421	-	BSUIS_A0152	-	hypothetical protein
145	 58.95	0	166517..166840	-	107	163842422	-	BSUIS_A0153	-	hypothetical protein
146	 57.19	0	166850..167134	-	94	163842423	ihfB	BSUIS_A0154	-	integration host factor subunit beta
147	 60.16	0	167181..168164	-	327	163842424	sppA	BSUIS_A0155	-	signal peptide peptidase SppA, 36K type
148	 56.29	0	168626..169348	+	240	163842425	-	BSUIS_A0156	-	hypothetical protein
149	 61.14	0	169671..170285	+	204	163842426	-	BSUIS_A0157	-	hypothetical protein
150	 59.83	0	170297..171130	+	277	163842427	-	BSUIS_A0158	-	ABC transporter ATP-binding protein
151	 57.75	0	171426..172928	+	500	163842428	rpoN	BSUIS_A0159	-	RNA polymerase factor sigma-54
152	 46.99	-2	173077..173442	-	121	163842429	-	BSUIS_A0160	-	hypothetical protein
153	 58.92	0	173678..174271	+	197	163842430	yfiA	BSUIS_A0161	-	ribosomal subunit interface protein
154	 58.49	0	174374..174838	+	154	163842431	ptsN	BSUIS_A0162	-	PTS IIA-like nitrogen-regulatory protein PtsN
155	 58.54	0	174919..175164	-	81	163842432	-	BSUIS_A0163	-	hypothetical protein
156	 56.50	0	175270..175692	-	140	163842433	hspD	BSUIS_A0164	-	small heat shock protein hspD
157	 49.25	-1	175783..175983	-	66	163842434	-	BSUIS_A0165	-	hypothetical protein
158	 60.51	0	176567..177313	+	248	163842435	nth	BSUIS_A0167	-	endonuclease III
159	 58.40	0	177354..178067	-	237	163842436	-	BSUIS_A0168	-	CysZ-like protein
160	 59.00	0	178064..178324	-	86	163842437	-	BSUIS_A0169	-	hypothetical protein
161	 59.82	0	178327..179319	+	330	163842438	-	BSUIS_A0170	-	fructokinase-2
162	 59.97	0	179338..179994	-	218	163842439	-	BSUIS_A0171	-	hypothetical protein
163	 59.31	0	180127..180819	-	230	163842440	grpE	BSUIS_A0172	-	protein grpE
164	 59.85	0	180925..181995	-	356	163842441	hrcA	BSUIS_A0173	-	heat-inducible transcription repressor
165	 62.76	+1	182217..182933	+	238	163842442	rph	BSUIS_A0174	-	ribonuclease PH
166	 57.78	0	183107..183511	+	134	163842443	-	BSUIS_A0175	-	glyoxalase/bleomycin resistance protein/dioxygenase
167	 59.58	0	183514..184176	+	220	163842444	rdgB	BSUIS_A0176	-	putative deoxyribonucleotide triphosphate pyrophosphatase
168	 60.49	0	184173..185387	+	404	163842445	-	BSUIS_A0177	-	coproporphyrinogen III oxidase
169	 62.06	+1	185399..186310	+	303	163842446	-	BSUIS_A0178	-	hypothetical protein
170	 61.68	+1	186307..186687	+	126	163842447	-	BSUIS_A0179	-	hypothetical protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.