IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1121	 49.31	-1	1128757..1129338	-	193	163843398	-	BSUIS_A1180	-	hypothetical protein
1122	 57.43	0	1129675..1130952	-	425	163843399	eno	BSUIS_A1181	-	phosphopyruvate hydratase
1123	 56.95	0	1131139..1131972	-	277	163843400	kdsA	BSUIS_A1182	-	2-dehydro-3-deoxyphosphooctonate aldolase
1124	 55.80	0	1132078..1133706	-	542	163843401	pyrG	BSUIS_A1183	-	CTP synthetase
1125	 63.53	+1	1134921..1135367	-	148	163843402	secG	BSUIS_A1185	-	preprotein translocase subunit SecG
1126	 59.61	0	1135467..1136231	-	254	163843403	tpiA	BSUIS_A1186	-	triosephosphate isomerase
1127	 59.30	0	1136450..1138336	+	628	163843404	-	BSUIS_A1187	-	rotamase family protein
1128	 61.37	+1	1138351..1139370	+	339	163843405	trpD	BSUIS_A1188	-	anthranilate phosphoribosyltransferase
1129	 58.36	0	1139387..1140193	+	268	163843406	trpC	BSUIS_A1189	-	indole-3-glycerol-phosphate synthase
1130	 60.24	0	1140190..1140687	+	165	163843407	moaC	BSUIS_A1190	-	molybdenum cofactor biosynthesis protein C
1131	 60.91	0	1140783..1141997	+	404	163843408	-	BSUIS_A1191	-	molybdenum cofactor synthesis domain-containing protein
1132	 57.81	0	1142245..1142967	+	240	163843409	lexA	BSUIS_A1192	-	LexA repressor
1133	 57.50	0	1142961..1145492	-	843	163843410	-	BSUIS_A1193	-	ComEC/Rec2-related protein
1134	 53.67	0	1145524..1145700	-	58	163843411	-	BSUIS_A1194	-	hypothetical protein
1135	 59.99	0	1145713..1147134	+	473	163843412	gltX	BSUIS_A1195	-	glutamyl-tRNA synthetase
1136	 57.23	0	1147363..1148655	+	430	163843413	gltA	BSUIS_A1196	-	type II citrate synthase
1137	 58.00	0	1148828..1150015	-	395	163843414	lpxB	BSUIS_A1197	-	lipid-A-disaccharide synthase
1138	 58.58	0	1150012..1150914	-	300	163843415	-	BSUIS_A1198	-	hypothetical protein
1139	 57.47	0	1150895..1151731	-	278	163843416	lpxA	BSUIS_A1199	-	UDP-N-acetylglucosamine acyltransferase
1140	 54.01	0	1151740..1152213	-	157	163843417	fabZ	BSUIS_A1200	-	(3R)-hydroxymyristoyl-ACP dehydratase
1141	 58.43	0	1152206..1153261	-	351	163843418	lpxD	BSUIS_A1201	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1142	 54.39	0	1153315..1155660	-	781	163843419	yaeT	BSUIS_A1202	-	Outer membrane protein assembly factor yaeT precursor
1143	 57.11	0	1155996..1157135	-	379	163843420	-	BSUIS_A1203	-	membrane-associated zinc metalloprotease
1144	 58.92	0	1157202..1158014	-	270	163843421	cdsA	BSUIS_A1204	-	phosphatidate cytidylyltransferase
1145	 60.00	0	1158119..1158883	-	254	163843422	uppS	BSUIS_A1205	-	undecaprenyl diphosphate synthase
1146	 57.93	0	1158928..1159488	-	186	163843423	frr	BSUIS_A1206	-	ribosome recycling factor
1147	 57.61	0	1159524..1160495	-	323	163843424	pyrH	BSUIS_A1207	-	uridylate kinase
1148	 59.69	0	1160413..1161330	-	305	163843425	tsf	BSUIS_A1208	-	elongation factor Ts
1149	 59.40	0	1161520..1162290	-	256	163843426	rpsB	BSUIS_A1209	-	30S ribosomal protein S2
1150	 51.92	-1	1162513..1163007	-	164	163843427	-	BSUIS_A1210	-	hypothetical protein
1151	 53.50	0	1163119..1163961	-	280	163843428	-	BSUIS_A1211	-	hypothetical protein
1152	 58.06	0	1164105..1164569	+	154	163843429	-	BSUIS_A1212	-	endoribonuclease L-PSP
1153	 57.22	0	1164571..1165311	+	246	163843430	-	BSUIS_A1213	-	glycerophosphoryl diester phosphodiesterase
1154	 54.97	0	1165366..1166553	+	395	163843431	-	BSUIS_A1214	-	hypothetical protein
1155	 53.43	0	1166625..1167047	+	140	163843432	-	BSUIS_A1215	-	hypothetical protein
1156	 57.54	0	1167154..1169628	-	824	163843433	clpA	BSUIS_A1216	-	ATP-dependent Clp protease ATP-binding subunit clpA
1157	 52.42	-1	1169635..1169985	-	116	163843434	clpS	BSUIS_A1217	-	ATP-dependent Clp protease adaptor protein ClpS
1158	 56.25	0	1170046..1170237	+	63	163843435	-	BSUIS_A1218	-	hypothetical protein
1159	 61.31	+1	1170471..1171889	+	472	163843436	-	BSUIS_A1219	-	Serine-type D-Ala-D-Ala carboxypeptidase
1160	 59.36	0	1171921..1172262	+	113	163843437	-	BSUIS_A1220	-	hypothetical protein
1161	 61.05	0	1172014..1172298	-	94	163843438	-	BSUIS_A1221	-	hypothetical protein
1162	 58.68	0	1172376..1172813	-	145	163843439	-	BSUIS_A1222	-	hypothetical protein
1163	 59.33	0	1172902..1174305	-	467	163843440	sdaA	BSUIS_A1223	-	L-serine ammonia-lyase
1164	 50.79	-1	1174503..1174628	-	41	163843441	-	BSUIS_A1224	-	hypothetical protein
1165	 56.10	0	1174827..1175621	-	264	163843442	-	BSUIS_A1225	-	hypothetical protein
1166	 58.36	0	1175796..1176782	+	328	163843443	-	BSUIS_A1226	-	hypothetical protein
1167	 55.81	0	1176793..1177179	-	128	163843444	-	BSUIS_A1227	-	MerR family transcriptional regulator
1168	 54.64	0	1177417..1177782	+	121	163843445	-	BSUIS_A1228	-	hypothetical protein
1169	 59.77	0	1177797..1178144	+	115	163843446	-	BSUIS_A1229	-	hypothetical protein
1170	 55.56	0	1178215..1178529	+	104	163843447	-	BSUIS_A1230	-	protein of unknown function DUF883 ElaB
1171	 57.69	0	1178976..1179443	+	155	163843448	queF	BSUIS_A1231	-	7-cyano-7-deazaguanine reductase
1172	 47.33	-2	1179447..1179596	-	49	163843449	-	BSUIS_A1232	-	hypothetical protein
1173	 59.32	0	1179574..1179750	+	58	163843450	-	BSUIS_A1233	-	hypothetical protein
1174	 53.96	0	1179782..1180324	+	180	163843451	-	BSUIS_A1234	-	hypothetical protein
1175	 57.89	0	1180327..1181739	-	470	163843452	-	BSUIS_A1235	-	hypothetical protein
1176	 58.43	0	1181869..1183422	+	517	163843453	-	BSUIS_A1236	-	propionyl-CoA carboxylase
1177	 59.63	0	1183507..1185510	+	667	163843454	-	BSUIS_A1237	-	propionyl-CoA carboxylase, alpha subunit
1178	 58.86	0	1185571..1187709	+	712	163843455	-	BSUIS_A1238	-	methylmalonyl-CoA mutase
1179	 56.20	0	1187816..1188178	-	120	163843456	-	BSUIS_A1239	-	hypothetical protein
1180	 57.15	0	1188365..1190413	-	682	163843457	-	BSUIS_A1240	-	TRAP transporter, 4TM/12TM fusion protein
1181	 51.70	-1	1190454..1190600	-	48	163843458	-	BSUIS_A1241	-	hypothetical protein
1182	 57.88	0	1190650..1191639	-	329	163843459	-	BSUIS_A1242	-	TRAP transporter solute receptor TAXI family protein
1183	 57.43	0	1191785..1192618	-	277	163843460	murI	BSUIS_A1243	-	glutamate racemase
1184	 57.52	0	1192615..1193445	-	276	163843461	-	BSUIS_A1244	-	RNA methyltransferase
1185	 58.29	0	1193625..1194209	+	194	163843462	-	BSUIS_A1245	-	PfpI family intracellular peptidase
1186	 57.91	0	1194298..1194708	+	136	163843463	-	BSUIS_A1246	-	hypothetical protein
1187	 57.28	0	1194836..1196050	+	404	163843464	-	BSUIS_A1247	-	isocitrate dehydrogenase
1188	 58.09	0	1196272..1197717	+	481	163843465	phoA	BSUIS_A1248	-	bacterial alkaline phosphatase
1189	 58.77	0	1197869..1200526	-	885	163843466	alaS	BSUIS_A1249	-	alanyl-tRNA synthetase
1190	 56.91	0	1200919..1202004	-	361	163843467	recA	BSUIS_A1250	-	recombinase A
1191	 48.41	-2	1202174..1202299	-	41	163843468	-	BSUIS_A1251	-	hypothetical protein
1192	 59.58	0	1202335..1202997	-	220	163843469	-	BSUIS_A1252	-	OmpA/MotB domain-containing protein
1193	 56.07	0	1203084..1203668	-	194	163843470	-	BSUIS_A1253	-	lytic transglycosylase catalytic
1194	 59.97	0	1203792..1205105	-	437	163843471	-	BSUIS_A1254	-	recombination factor protein RarA
1195	 58.95	0	1205252..1206676	-	474	163843472	degP	BSUIS_A1255	-	protease Do
1196	 58.04	0	1206956..1207384	-	142	163843473	rplQ	BSUIS_A1256	-	50S ribosomal protein L17
1197	 57.20	0	1207546..1208559	-	337	163843474	rpoA	BSUIS_A1257	-	DNA-directed RNA polymerase subunit alpha
1198	 61.79	+1	1208675..1209064	-	129	163843475	rpsK	BSUIS_A1258	-	30S ribosomal protein S11
1199	 56.91	0	1209192..1209560	-	122	163843476	rpsM	BSUIS_A1259	-	30S ribosomal protein S13
1200	 49.43	-1	1209554..1209727	+	57	163843477	-	BSUIS_A1260	-	hypothetical protein
1201	 59.15	0	1209870..1210454	-	194	163843478	-	BSUIS_A1261	-	adenylate kinase
1202	 55.18	0	1210451..1211791	-	446	163843479	secY	BSUIS_A1262	-	preprotein translocase subunit SecY
1203	 59.66	0	1211952..1212422	-	156	163843480	rplO	BSUIS_A1263	-	50S ribosomal protein L15
1204	 58.59	0	1212443..1212640	-	65	163843481	rpmD	BSUIS_A1264	-	50S ribosomal protein L30
1205	 60.25	0	1212758..1213318	-	186	163843482	rpsE	BSUIS_A1265	-	30S ribosomal protein S5
1206	 61.98	+1	1213360..1213722	-	120	163843483	rplR	BSUIS_A1266	-	50S ribosomal protein L18
1207	 57.49	0	1213735..1214268	-	177	163843484	rplF	BSUIS_A1267	-	50S ribosomal protein L6
1208	 57.89	0	1214307..1214705	-	132	163843485	rpsH	BSUIS_A1268	-	30S ribosomal protein S8
1209	 57.84	0	1214716..1215021	-	101	163843486	-	BSUIS_A1269	-	30S ribosomal protein S14
1210	 54.84	0	1215049..1215606	-	185	163843487	rplE	BSUIS_A1270	-	50S ribosomal protein L5
1211	 57.05	0	1215599..1215910	-	103	163843488	rplX	BSUIS_A1271	-	50S ribosomal protein L24
1212	 54.74	0	1215923..1216291	-	122	163843489	rplN	BSUIS_A1272	-	50S ribosomal protein L14
1213	 53.50	0	1216360..1216602	-	80	163843490	rpsQ	BSUIS_A1273	-	30S ribosomal protein S17
1214	 58.21	0	1216615..1216815	-	66	163843491	rpmC	BSUIS_A1274	-	50S ribosomal protein L29
1215	 58.21	0	1216828..1217241	-	137	163843492	rplP	BSUIS_A1275	-	50S ribosomal protein L16
1216	 57.24	0	1217280..1217990	-	236	163843493	rpsC	BSUIS_A1276	-	30S ribosomal protein S3
1217	 58.85	0	1217990..1218373	-	127	163843494	rplV	BSUIS_A1277	-	50S ribosomal protein L22
1218	 54.48	0	1218376..1218654	-	92	163843495	rpsS	BSUIS_A1278	-	30S ribosomal protein S19
1219	 59.95	0	1218670..1219503	-	277	163843496	rplB	BSUIS_A1279	-	50S ribosomal protein L2
1220	 57.14	0	1219525..1219818	-	97	163843497	rplW	BSUIS_A1280	-	50S ribosomal protein L23
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.