IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1058	 58.12	0	1058747..1059331	-	194	163843335	-	BSUIS_A1113	-	nitroreductase
1059	 57.37	0	1059551..1060561	+	336	163843336	-	BSUIS_A1114	-	hypothetical protein
1060	 56.50	0	1060616..1062592	-	658	163843337	thrS	BSUIS_A1115	-	threonyl-tRNA synthetase
1061	 58.07	0	1062807..1064039	-	410	163843338	-	BSUIS_A1116	-	Serine-type D-Ala-D-Ala carboxypeptidase
1062	 60.00	0	1064146..1064625	-	159	163843339	-	BSUIS_A1117	-	hypothetical protein
1063	 57.37	0	1064519..1064959	-	146	163843340	-	BSUIS_A1118	-	NifU domain-containing protein
1064	 57.01	0	1065223..1065864	+	213	163843341	folE	BSUIS_A1119	-	GTP cyclohydrolase I
1065	 57.14	0	1065887..1066306	+	139	163843342	hisI	BSUIS_A1120	-	phosphoribosyl-AMP cyclohydrolase
1066	 59.39	0	1066523..1067470	+	315	163843343	-	BSUIS_A1121	-	patatin
1067	 40.56	-2	1067557..1067736	+	59	163843344	-	BSUIS_A1122	-	hypothetical protein
1068	 53.82	0	1067944..1069188	+	414	163843345	-	BSUIS_A1124	-	site-specific recombinase, phage integrase family protein
1069	 53.58	0	1069327..1069731	+	134	163843346	-	BSUIS_A1125	-	hypothetical protein
1070	 54.80	0	1071487..1072851	-	454	163843347	-	BSUIS_A1126	-	hypothetical protein
1071	 57.93	0	1073407..1074024	-	205	163843348	cin	BSUIS_A1127	-	DNA-invertase
1072	 52.63	-1	1074481..1074594	-	37	163843349	-	BSUIS_A1128	-	hypothetical protein
1073	 55.21	0	1075153..1075728	-	191	163843350	-	BSUIS_A1129	-	BRO domain-containing protein
1074	 57.07	0	1076255..1077400	-	381	163843351	-	BSUIS_A1131	-	acyl-CoA transferase
1075	 56.96	0	1077479..1078663	-	394	163843352	-	BSUIS_A1132	-	glutaryl-CoA dehydrogenase
1076	 58.74	0	1078765..1079697	+	310	163843353	-	BSUIS_A1133	-	LysR family transcriptional regulator
1077	 59.15	0	1079667..1080650	-	327	163843354	-	BSUIS_A1134	-	luciferase family protein
1078	 57.25	0	1080731..1083820	-	1029	163843355	-	BSUIS_A1135	-	acriflavin resistance protein
1079	 57.45	0	1083830..1085011	-	393	163843356	-	BSUIS_A1136	-	RND family efflux transporter MFP subunit
1080	 54.32	0	1085119..1085685	+	188	163843357	-	BSUIS_A1137	-	TetR family transcriptional regulator
1081	 58.99	0	1085722..1086855	-	377	163843358	tgt	BSUIS_A1138	-	queuine tRNA-ribosyltransferase
1082	 58.42	0	1086852..1087943	-	363	163843359	queA	BSUIS_A1139	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1083	 59.37	0	1088065..1088571	-	168	163843360	-	BSUIS_A1140	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1084	 55.84	0	1088634..1089224	-	196	163843361	-	BSUIS_A1141	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1085	 55.76	0	1089245..1089739	-	164	163843362	coaD	BSUIS_A1142	-	phosphopantetheine adenylyltransferase
1086	 48.05	-2	1089476..1089937	+	153	163843363	-	BSUIS_A1143	-	hypothetical protein
1087	 52.67	-1	1089934..1090083	+	49	163843364	-	BSUIS_A1144	-	hypothetical protein
1088	 55.00	0	1089955..1090194	-	79	163843365	-	BSUIS_A1145	-	hypothetical protein
1089	 58.87	0	1090250..1093018	-	922	163843366	gyrA	BSUIS_A1146	-	DNA gyrase subunit A
1090	 56.83	0	1093306..1093935	+	209	163843367	-	BSUIS_A1147	-	hypothetical protein
1091	 56.13	0	1094026..1094604	-	192	163843368	phnN	BSUIS_A1148	-	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
1092	 54.86	0	1094791..1095552	+	253	163843369	phnF	BSUIS_A1149	-	phosphonates metabolism transcriptional regulator PhnF
1093	 55.32	0	1095903..1096043	+	46	163843370	-	BSUIS_A1150	-	hypothetical protein
1094	 56.41	0	1096237..1096743	-	168	163843371	ssb	BSUIS_A1151	-	single-strand binding protein
1095	 42.34	-2	1096856..1096966	+	36	163843372	-	BSUIS_A1152	-	hypothetical protein
1096	 53.73	0	1097311..1097511	+	66	163843373	-	BSUIS_A1153	-	hypothetical protein
1097	 58.29	0	1097642..1100566	+	974	163843374	uvrA	BSUIS_A1154	-	excinuclease ABC subunit A
1098	 60.51	0	1100753..1101028	-	91	163843375	-	BSUIS_A1155	-	DNA-binding protein HRL18
1099	 56.87	0	1101209..1103647	-	812	163843376	lon	BSUIS_A1156	-	ATP-dependent protease La
1100	 56.39	0	1104078..1105352	-	424	163843377	clpX	BSUIS_A1157	-	ATP-dependent protease ATP-binding subunit
1101	 56.51	0	1105734..1106363	-	209	163843378	clpP	BSUIS_A1158	-	ATP-dependent Clp protease proteolytic subunit
1102	 59.62	0	1106468..1107886	-	472	163843379	-	BSUIS_A1159	-	GTP-binding protein HSR1-related
1103	 45.57	-2	1108077..1108313	-	78	163843380	hfq	BSUIS_A1160	-	RNA-binding protein Hfq
1104	 48.33	-2	1108319..1108558	-	79	163843381	-	BSUIS_A1161	-	hypothetical protein
1105	 51.62	-1	1108542..1109372	-	276	163843382	-	BSUIS_A1162	-	hypothetical protein
1106	 60.21	0	1110822..1112183	-	453	163843383	ntrX	BSUIS_A1164	-	nitrogen assimilation regulatory protein ntrX
1107	 57.08	0	1112185..1114509	-	774	163843384	-	BSUIS_A1165	-	PAS domain-containing protein
1108	 58.88	0	1114600..1115922	-	440	163843385	ntrC	BSUIS_A1166	-	nitrogen regulation protein NR(I)
1109	 58.98	0	1117107..1118108	-	333	163843386	-	BSUIS_A1168	-	NifR3 family TIM-barrel protein
1110	 57.82	0	1118120..1119475	+	451	163843387	ispF	BSUIS_A1169	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1111	 59.44	0	1119472..1119969	+	165	163843388	-	BSUIS_A1170	-	competence/damage inducible protein CinA
1112	 57.76	0	1120046..1120786	+	246	163843389	-	BSUIS_A1171	-	oxidoreductase, short-chain dehydrogenase/reductase family protein
1113	 53.16	0	1120844..1121302	-	152	163843390	-	BSUIS_A1172	-	cyclase/dehydrase
1114	 56.45	0	1121308..1122276	-	322	163843391	lipA	BSUIS_A1173	-	lipoyl synthase
1115	 64.81	+1	1122386..1122547	-	53	163843392	-	BSUIS_A1174	-	hypothetical protein
1116	 58.88	0	1122666..1124129	-	487	163843393	lpdA	BSUIS_A1175	-	dihydrolipoamide dehydrogenase
1117	 59.45	0	1124212..1125555	-	447	163843394	-	BSUIS_A1176	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1118	 57.58	0	1125573..1126958	-	461	163843395	-	BSUIS_A1177	-	pyruvate dehydrogenase subunit beta
1119	 55.81	0	1126977..1128017	-	346	163843396	-	BSUIS_A1178	-	pyruvate dehydrogenase complex, E1 component, alpha subunit
1120	 49.70	-1	1128156..1128485	-	109	163843397	-	BSUIS_A1179	-	septum formation initiator
1121	 49.31	-1	1128757..1129338	-	193	163843398	-	BSUIS_A1180	-	hypothetical protein
1122	 57.43	0	1129675..1130952	-	425	163843399	eno	BSUIS_A1181	-	phosphopyruvate hydratase
1123	 56.95	0	1131139..1131972	-	277	163843400	kdsA	BSUIS_A1182	-	2-dehydro-3-deoxyphosphooctonate aldolase
1124	 55.80	0	1132078..1133706	-	542	163843401	pyrG	BSUIS_A1183	-	CTP synthetase
1125	 63.53	+1	1134921..1135367	-	148	163843402	secG	BSUIS_A1185	-	preprotein translocase subunit SecG
1126	 59.61	0	1135467..1136231	-	254	163843403	tpiA	BSUIS_A1186	-	triosephosphate isomerase
1127	 59.30	0	1136450..1138336	+	628	163843404	-	BSUIS_A1187	-	rotamase family protein
1128	 61.37	+1	1138351..1139370	+	339	163843405	trpD	BSUIS_A1188	-	anthranilate phosphoribosyltransferase
1129	 58.36	0	1139387..1140193	+	268	163843406	trpC	BSUIS_A1189	-	indole-3-glycerol-phosphate synthase
1130	 60.24	0	1140190..1140687	+	165	163843407	moaC	BSUIS_A1190	-	molybdenum cofactor biosynthesis protein C
1131	 60.91	0	1140783..1141997	+	404	163843408	-	BSUIS_A1191	-	molybdenum cofactor synthesis domain-containing protein
1132	 57.81	0	1142245..1142967	+	240	163843409	lexA	BSUIS_A1192	-	LexA repressor
1133	 57.50	0	1142961..1145492	-	843	163843410	-	BSUIS_A1193	-	ComEC/Rec2-related protein
1134	 53.67	0	1145524..1145700	-	58	163843411	-	BSUIS_A1194	-	hypothetical protein
1135	 59.99	0	1145713..1147134	+	473	163843412	gltX	BSUIS_A1195	-	glutamyl-tRNA synthetase
1136	 57.23	0	1147363..1148655	+	430	163843413	gltA	BSUIS_A1196	-	type II citrate synthase
1137	 58.00	0	1148828..1150015	-	395	163843414	lpxB	BSUIS_A1197	-	lipid-A-disaccharide synthase
1138	 58.58	0	1150012..1150914	-	300	163843415	-	BSUIS_A1198	-	hypothetical protein
1139	 57.47	0	1150895..1151731	-	278	163843416	lpxA	BSUIS_A1199	-	UDP-N-acetylglucosamine acyltransferase
1140	 54.01	0	1151740..1152213	-	157	163843417	fabZ	BSUIS_A1200	-	(3R)-hydroxymyristoyl-ACP dehydratase
1141	 58.43	0	1152206..1153261	-	351	163843418	lpxD	BSUIS_A1201	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1142	 54.39	0	1153315..1155660	-	781	163843419	yaeT	BSUIS_A1202	-	Outer membrane protein assembly factor yaeT precursor
1143	 57.11	0	1155996..1157135	-	379	163843420	-	BSUIS_A1203	-	membrane-associated zinc metalloprotease
1144	 58.92	0	1157202..1158014	-	270	163843421	cdsA	BSUIS_A1204	-	phosphatidate cytidylyltransferase
1145	 60.00	0	1158119..1158883	-	254	163843422	uppS	BSUIS_A1205	-	undecaprenyl diphosphate synthase
1146	 57.93	0	1158928..1159488	-	186	163843423	frr	BSUIS_A1206	-	ribosome recycling factor
1147	 57.61	0	1159524..1160495	-	323	163843424	pyrH	BSUIS_A1207	-	uridylate kinase
1148	 59.69	0	1160413..1161330	-	305	163843425	tsf	BSUIS_A1208	-	elongation factor Ts
1149	 59.40	0	1161520..1162290	-	256	163843426	rpsB	BSUIS_A1209	-	30S ribosomal protein S2
1150	 51.92	-1	1162513..1163007	-	164	163843427	-	BSUIS_A1210	-	hypothetical protein
1151	 53.50	0	1163119..1163961	-	280	163843428	-	BSUIS_A1211	-	hypothetical protein
1152	 58.06	0	1164105..1164569	+	154	163843429	-	BSUIS_A1212	-	endoribonuclease L-PSP
1153	 57.22	0	1164571..1165311	+	246	163843430	-	BSUIS_A1213	-	glycerophosphoryl diester phosphodiesterase
1154	 54.97	0	1165366..1166553	+	395	163843431	-	BSUIS_A1214	-	hypothetical protein
1155	 53.43	0	1166625..1167047	+	140	163843432	-	BSUIS_A1215	-	hypothetical protein
1156	 57.54	0	1167154..1169628	-	824	163843433	clpA	BSUIS_A1216	-	ATP-dependent Clp protease ATP-binding subunit clpA
1157	 52.42	-1	1169635..1169985	-	116	163843434	clpS	BSUIS_A1217	-	ATP-dependent Clp protease adaptor protein ClpS
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.