IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1018	 55.07	0	1014265..1014678	+	137	163843295	-	BSUIS_A1070	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1019	 56.68	0	1014683..1015303	-	206	163843296	-	BSUIS_A1071	-	hypothetical protein
1020	 49.61	-1	1015239..1015367	-	42	163843297	-	BSUIS_A1072	-	hypothetical protein
1021	 58.03	0	1015461..1016282	+	273	163843298	folP	BSUIS_A1073	-	dihydropteroate synthase
1022	 53.06	0	1016319..1016678	+	119	163843299	folB	BSUIS_A1074	-	dihydroneopterin aldolase
1023	 59.36	0	1016675..1017208	+	177	163843300	folK	BSUIS_A1075	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1024	 56.81	0	1017323..1017880	-	185	163843301	-	BSUIS_A1076	-	hypothetical protein
1025	 59.40	0	1018132..1019205	-	357	163843302	-	BSUIS_A1077	-	hypothetical protein
1026	 58.66	0	1019202..1020662	-	486	163843303	-	BSUIS_A1078	-	protein of unknown function DUF463 YcjX family protein
1027	 53.89	0	1020755..1021255	-	166	163843304	-	BSUIS_A1079	-	phosphohistidine phosphatase, SixA
1028	 51.80	-1	1021651..1022067	+	138	163843305	dksA	BSUIS_A1080	-	RNA polymerase-binding protein DksA
1029	 60.30	0	1022213..1023469	-	418	163843306	-	BSUIS_A1081	-	basic proline-rich protein precursor
1030	 58.58	0	1023836..1026532	+	898	163843307	-	BSUIS_A1082	-	PAS domain-containing protein
1031	 57.49	0	1026557..1027765	+	402	163843308	-	BSUIS_A1083	-	hypothetical protein
1032	 55.56	0	1027796..1029118	+	440	163843309	-	BSUIS_A1084	-	beta-lactamase
1033	 57.49	0	1030426..1034229	-	1267	163843310	-	BSUIS_A1086	-	ribonucleotide-diphosphate reductase subunit alpha
1034	 47.50	-2	1034282..1034521	+	79	163843311	-	BSUIS_A1087	-	hypothetical protein
1035	 59.51	0	1034931..1035419	-	162	163843312	-	BSUIS_A1088	-	diphosphoinositol polyphosphate phosphohydrolase 3 beta
1036	 57.83	0	1035660..1036157	-	165	163843313	gpt	BSUIS_A1089	-	xanthine-guanine phosphoribosyltransferase
1037	 59.22	0	1036607..1037452	-	281	163843314	-	BSUIS_A1090	-	UspA domain-containing protein
1038	 57.58	0	1037530..1038288	-	252	163843315	-	BSUIS_A1091	-	molybdopterin binding domain-containing protein
1039	 59.00	0	1038449..1039048	+	199	163843316	wrbA	BSUIS_A1092	-	TrpR binding protein WrbA
1040	 50.67	-1	1039026..1039175	-	49	163843317	-	BSUIS_A1093	-	hypothetical protein
1041	 54.24	0	1039253..1040443	+	396	163843318	ilvA	BSUIS_A1095	-	threonine dehydratase biosynthetic
1042	 62.13	+1	1040510..1042117	+	535	163843319	-	BSUIS_A1096	-	DEAD/DEAH box helicase domain-containing protein
1043	 57.82	0	1042288..1043316	+	342	163843320	-	BSUIS_A1097	-	cysteine synthase A
1044	 55.91	0	1043319..1044062	+	247	163843321	alaS	BSUIS_A1098	-	alanyl-tRNA synthetase
1045	 58.25	0	1044089..1044943	+	284	163843322	-	BSUIS_A1099	-	3-mercaptopyruvate sulfurtransferase
1046	 54.50	0	1045049..1045459	+	136	163843323	-	BSUIS_A1100	-	GCN5-related N-acetyltransferase
1047	 56.60	0	1045498..1046292	-	264	163843324	-	BSUIS_A1101	-	diguanylate cyclase
1048	 55.26	0	1046857..1048347	-	496	163843325	-	BSUIS_A1102	-	Acetyl-CoA hydrolase
1049	 56.55	0	1048612..1050153	-	513	163843326	-	BSUIS_A1103	-	EmrB/QacA family drug resistance transporter
1050	 57.58	0	1050153..1051253	-	366	163843327	-	BSUIS_A1104	-	HlyD family protein secretion protein
1051	 62.20	+1	1051647..1052630	+	327	163843328	-	BSUIS_A1105	-	zinc-binding alcohol dehydrogenase family protein
1052	 58.44	0	1052674..1053816	-	380	163843329	pepQ	BSUIS_A1106	-	Xaa-Pro dipeptidase
1053	 55.84	0	1054075..1054905	-	276	163843330	-	BSUIS_A1107	-	methyltransferase type 12
1054	 55.38	0	1055014..1055979	-	321	163843331	-	BSUIS_A1108	-	Sodium/bile acid cotransporter 7
1055	 50.98	-1	1056007..1056159	-	50	163843332	-	BSUIS_A1109	-	hypothetical protein
1056	 53.97	0	1056108..1057115	-	335	163843333	galE	BSUIS_A1110	-	UDP-glucose 4-epimerase
1057	 56.37	0	1058093..1058704	-	203	163843334	-	BSUIS_A1112	-	hypothetical protein
1058	 58.12	0	1058747..1059331	-	194	163843335	-	BSUIS_A1113	-	nitroreductase
1059	 57.37	0	1059551..1060561	+	336	163843336	-	BSUIS_A1114	-	hypothetical protein
1060	 56.50	0	1060616..1062592	-	658	163843337	thrS	BSUIS_A1115	-	threonyl-tRNA synthetase
1061	 58.07	0	1062807..1064039	-	410	163843338	-	BSUIS_A1116	-	Serine-type D-Ala-D-Ala carboxypeptidase
1062	 60.00	0	1064146..1064625	-	159	163843339	-	BSUIS_A1117	-	hypothetical protein
1063	 57.37	0	1064519..1064959	-	146	163843340	-	BSUIS_A1118	-	NifU domain-containing protein
1064	 57.01	0	1065223..1065864	+	213	163843341	folE	BSUIS_A1119	-	GTP cyclohydrolase I
1065	 57.14	0	1065887..1066306	+	139	163843342	hisI	BSUIS_A1120	-	phosphoribosyl-AMP cyclohydrolase
1066	 59.39	0	1066523..1067470	+	315	163843343	-	BSUIS_A1121	-	patatin
1067	 40.56	-2	1067557..1067736	+	59	163843344	-	BSUIS_A1122	-	hypothetical protein
1068	 53.82	0	1067944..1069188	+	414	163843345	-	BSUIS_A1124	-	site-specific recombinase, phage integrase family protein
1069	 53.58	0	1069327..1069731	+	134	163843346	-	BSUIS_A1125	-	hypothetical protein
1070	 54.80	0	1071487..1072851	-	454	163843347	-	BSUIS_A1126	-	hypothetical protein
1071	 57.93	0	1073407..1074024	-	205	163843348	cin	BSUIS_A1127	-	DNA-invertase
1072	 52.63	-1	1074481..1074594	-	37	163843349	-	BSUIS_A1128	-	hypothetical protein
1073	 55.21	0	1075153..1075728	-	191	163843350	-	BSUIS_A1129	-	BRO domain-containing protein
1074	 57.07	0	1076255..1077400	-	381	163843351	-	BSUIS_A1131	-	acyl-CoA transferase
1075	 56.96	0	1077479..1078663	-	394	163843352	-	BSUIS_A1132	-	glutaryl-CoA dehydrogenase
1076	 58.74	0	1078765..1079697	+	310	163843353	-	BSUIS_A1133	-	LysR family transcriptional regulator
1077	 59.15	0	1079667..1080650	-	327	163843354	-	BSUIS_A1134	-	luciferase family protein
1078	 57.25	0	1080731..1083820	-	1029	163843355	-	BSUIS_A1135	-	acriflavin resistance protein
1079	 57.45	0	1083830..1085011	-	393	163843356	-	BSUIS_A1136	-	RND family efflux transporter MFP subunit
1080	 54.32	0	1085119..1085685	+	188	163843357	-	BSUIS_A1137	-	TetR family transcriptional regulator
1081	 58.99	0	1085722..1086855	-	377	163843358	tgt	BSUIS_A1138	-	queuine tRNA-ribosyltransferase
1082	 58.42	0	1086852..1087943	-	363	163843359	queA	BSUIS_A1139	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1083	 59.37	0	1088065..1088571	-	168	163843360	-	BSUIS_A1140	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1084	 55.84	0	1088634..1089224	-	196	163843361	-	BSUIS_A1141	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1085	 55.76	0	1089245..1089739	-	164	163843362	coaD	BSUIS_A1142	-	phosphopantetheine adenylyltransferase
1086	 48.05	-2	1089476..1089937	+	153	163843363	-	BSUIS_A1143	-	hypothetical protein
1087	 52.67	-1	1089934..1090083	+	49	163843364	-	BSUIS_A1144	-	hypothetical protein
1088	 55.00	0	1089955..1090194	-	79	163843365	-	BSUIS_A1145	-	hypothetical protein
1089	 58.87	0	1090250..1093018	-	922	163843366	gyrA	BSUIS_A1146	-	DNA gyrase subunit A
1090	 56.83	0	1093306..1093935	+	209	163843367	-	BSUIS_A1147	-	hypothetical protein
1091	 56.13	0	1094026..1094604	-	192	163843368	phnN	BSUIS_A1148	-	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
1092	 54.86	0	1094791..1095552	+	253	163843369	phnF	BSUIS_A1149	-	phosphonates metabolism transcriptional regulator PhnF
1093	 55.32	0	1095903..1096043	+	46	163843370	-	BSUIS_A1150	-	hypothetical protein
1094	 56.41	0	1096237..1096743	-	168	163843371	ssb	BSUIS_A1151	-	single-strand binding protein
1095	 42.34	-2	1096856..1096966	+	36	163843372	-	BSUIS_A1152	-	hypothetical protein
1096	 53.73	0	1097311..1097511	+	66	163843373	-	BSUIS_A1153	-	hypothetical protein
1097	 58.29	0	1097642..1100566	+	974	163843374	uvrA	BSUIS_A1154	-	excinuclease ABC subunit A
1098	 60.51	0	1100753..1101028	-	91	163843375	-	BSUIS_A1155	-	DNA-binding protein HRL18
1099	 56.87	0	1101209..1103647	-	812	163843376	lon	BSUIS_A1156	-	ATP-dependent protease La
1100	 56.39	0	1104078..1105352	-	424	163843377	clpX	BSUIS_A1157	-	ATP-dependent protease ATP-binding subunit
1101	 56.51	0	1105734..1106363	-	209	163843378	clpP	BSUIS_A1158	-	ATP-dependent Clp protease proteolytic subunit
1102	 59.62	0	1106468..1107886	-	472	163843379	-	BSUIS_A1159	-	GTP-binding protein HSR1-related
1103	 45.57	-2	1108077..1108313	-	78	163843380	hfq	BSUIS_A1160	-	RNA-binding protein Hfq
1104	 48.33	-2	1108319..1108558	-	79	163843381	-	BSUIS_A1161	-	hypothetical protein
1105	 51.62	-1	1108542..1109372	-	276	163843382	-	BSUIS_A1162	-	hypothetical protein
1106	 60.21	0	1110822..1112183	-	453	163843383	ntrX	BSUIS_A1164	-	nitrogen assimilation regulatory protein ntrX
1107	 57.08	0	1112185..1114509	-	774	163843384	-	BSUIS_A1165	-	PAS domain-containing protein
1108	 58.88	0	1114600..1115922	-	440	163843385	ntrC	BSUIS_A1166	-	nitrogen regulation protein NR(I)
1109	 58.98	0	1117107..1118108	-	333	163843386	-	BSUIS_A1168	-	NifR3 family TIM-barrel protein
1110	 57.82	0	1118120..1119475	+	451	163843387	ispF	BSUIS_A1169	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1111	 59.44	0	1119472..1119969	+	165	163843388	-	BSUIS_A1170	-	competence/damage inducible protein CinA
1112	 57.76	0	1120046..1120786	+	246	163843389	-	BSUIS_A1171	-	oxidoreductase, short-chain dehydrogenase/reductase family protein
1113	 53.16	0	1120844..1121302	-	152	163843390	-	BSUIS_A1172	-	cyclase/dehydrase
1114	 56.45	0	1121308..1122276	-	322	163843391	lipA	BSUIS_A1173	-	lipoyl synthase
1115	 64.81	+1	1122386..1122547	-	53	163843392	-	BSUIS_A1174	-	hypothetical protein
1116	 58.88	0	1122666..1124129	-	487	163843393	lpdA	BSUIS_A1175	-	dihydrolipoamide dehydrogenase
1117	 59.45	0	1124212..1125555	-	447	163843394	-	BSUIS_A1176	-	branched-chain alpha-keto acid dehydrogenase subunit E2
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.