IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
966	 55.56	0	962887..963201	-	104	163843243	-	BSUIS_A1018	-	hypothetical protein
967	 48.29	-2	963201..963521	-	106	163843244	-	BSUIS_A1019	-	hypothetical protein
968	 59.11	0	963609..964217	+	202	163843245	-	BSUIS_A1020	-	tRNA-guanine transglycosylase
969	 57.72	0	964287..964655	+	122	163843246	-	BSUIS_A1021	-	transposase for insertion sequence element IS6501
970	 49.29	-1	964763..965044	+	93	163843247	-	BSUIS_A1022	-	transposase for insertion sequence element IS6501
971	 52.64	-1	965099..965818	+	239	163843248	-	BSUIS_A1023	-	hypothetical protein
972	 48.63	-1	965953..967599	+	548	163843249	-	BSUIS_A1024	-	hypothetical protein
973	 46.96	-2	967925..969157	+	410	163843250	-	BSUIS_A1025	-	hypothetical protein
974	 45.19	-2	969154..970713	+	519	163843251	-	BSUIS_A1026	-	hypothetical protein
975	 43.24	-2	970694..970915	-	73	163843252	-	BSUIS_A1027	-	hypothetical protein
976	 59.68	0	971060..971818	+	252	163843253	-	BSUIS_A1028	-	hypothetical protein
977	 53.70	0	971782..972051	-	89	163843254	-	BSUIS_A1029	-	hypothetical protein
978	 50.62	-1	972196..972438	+	80	163843255	-	BSUIS_A1030	-	hypothetical protein
979	 46.08	-2	972540..972641	+	33	163843256	-	BSUIS_A1031	-	hypothetical protein
980	 43.48	-2	972650..972787	+	45	163843257	-	BSUIS_A1032	-	hypothetical protein
981	 55.46	0	972778..973125	+	115	163843258	arsC	BSUIS_A1033	-	arsenate reductase
982	 57.74	0	973496..974761	+	421	163843259	rlpA	BSUIS_A1034	-	rare lipoprotein A
983	 58.27	0	974872..976062	+	396	163843260	-	BSUIS_A1035	-	Serine-type D-Ala-D-Ala carboxypeptidase
984	 57.83	0	976144..976788	+	214	163843261	tmk	BSUIS_A1036	-	thymidylate kinase
985	 59.83	0	976785..977867	+	360	163843262	holB	BSUIS_A1037	-	DNA polymerase III subunit delta'
986	 56.67	0	977887..978036	+	49	163843263	-	BSUIS_A1038	-	hypothetical protein
987	 57.69	0	978036..979583	+	515	163843264	metG	BSUIS_A1039	-	methionyl-tRNA synthetase
988	 55.81	0	979592..980383	+	263	163843265	-	BSUIS_A1040	-	TatD family hydrolase
989	 56.53	0	980386..981204	+	272	163843266	-	BSUIS_A1041	-	beta-lactamase domain-containing protein
990	 59.56	0	981254..983053	-	599	163843267	-	BSUIS_A1042	-	cyclic beta-1,2-glucan ABC transporter
991	 59.43	0	983366..984346	+	326	163843268	-	BSUIS_A1043	-	RluA family pseudouridine synthase
992	 54.33	0	984349..985272	+	307	163843269	-	BSUIS_A1044	-	hypothetical protein
993	 57.51	0	985269..985934	+	221	163843270	-	BSUIS_A1045	-	HAD family hydrolase
994	 58.49	0	985976..986758	+	260	163843271	-	BSUIS_A1046	-	ATP12 ATPase
995	 55.53	0	986884..988293	-	469	163843272	glnA	BSUIS_A1047	-	glutamine synthetase, type I
996	 53.69	0	988441..988779	-	112	163843273	glnB	BSUIS_A1048	-	nitrogen regulatory protein P-II
997	 60.56	0	989086..990591	+	501	163843274	-	BSUIS_A1049	-	YjeF family protein
998	 61.46	+1	990622..990813	-	63	163843275	-	BSUIS_A1050	-	hypothetical protein
999	 57.45	0	990891..991595	-	234	163843276	gph	BSUIS_A1051	-	phosphoglycolate phosphatase
1000	 50.00	-1	991650..991763	+	37	163843277	-	BSUIS_A1052	-	hypothetical protein
1001	 57.51	0	991942..992640	+	232	163843278	rpiA	BSUIS_A1053	-	ribose-5-phosphate isomerase A
1002	 59.96	0	992666..993202	+	178	163843279	-	BSUIS_A1054	-	hypothetical protein
1003	 55.84	0	993356..994750	+	464	163843280	gor	BSUIS_A1055	-	glutathione reductase
1004	 59.11	0	994959..996347	+	462	163843281	-	BSUIS_A1056	-	3-deoxy-7-phosphoheptulonate synthase
1005	 53.56	0	996451..996801	+	116	163843282	dgkA	BSUIS_A1057	-	diacylglycerol kinase
1006	 57.02	0	996866..998545	+	559	163843283	nadE	BSUIS_A1058	-	NAD synthetase
1007	 57.28	0	998557..999930	+	457	163843284	gltX	BSUIS_A1059	-	glutamyl-tRNA synthetase
1008	 59.66	0	1000744..1003068	-	774	163843285	-	BSUIS_A1060	-	malic enzyme
1009	 57.49	0	1003286..1004266	-	326	163843286	-	BSUIS_A1061	-	mandelate racemase/muconate lactonizing protein
1010	 55.70	0	1004327..1005502	+	391	163843287	-	BSUIS_A1062	-	hypothetical protein
1011	 56.29	0	1005720..1006577	+	285	163843288	-	BSUIS_A1063	-	ABC transporter related
1012	 55.72	0	1006581..1007576	+	331	163843289	-	BSUIS_A1064	-	hypothetical protein
1013	 55.56	0	1007600..1008202	+	200	163843290	-	BSUIS_A1065	-	hypothetical protein
1014	 44.76	-2	1008314..1008418	-	34	163843291	-	BSUIS_A1066	-	hypothetical protein
1015	 59.69	0	1008443..1013101	-	1552	163843292	-	BSUIS_A1067	-	hypothetical protein
1016	 44.24	-2	1013316..1013480	+	54	163843293	-	BSUIS_A1068	-	hypothetical protein
1017	 60.49	0	1013716..1014039	+	107	163843294	-	BSUIS_A1069	-	ferredoxin-6
1018	 55.07	0	1014265..1014678	+	137	163843295	-	BSUIS_A1070	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1019	 56.68	0	1014683..1015303	-	206	163843296	-	BSUIS_A1071	-	hypothetical protein
1020	 49.61	-1	1015239..1015367	-	42	163843297	-	BSUIS_A1072	-	hypothetical protein
1021	 58.03	0	1015461..1016282	+	273	163843298	folP	BSUIS_A1073	-	dihydropteroate synthase
1022	 53.06	0	1016319..1016678	+	119	163843299	folB	BSUIS_A1074	-	dihydroneopterin aldolase
1023	 59.36	0	1016675..1017208	+	177	163843300	folK	BSUIS_A1075	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1024	 56.81	0	1017323..1017880	-	185	163843301	-	BSUIS_A1076	-	hypothetical protein
1025	 59.40	0	1018132..1019205	-	357	163843302	-	BSUIS_A1077	-	hypothetical protein
1026	 58.66	0	1019202..1020662	-	486	163843303	-	BSUIS_A1078	-	protein of unknown function DUF463 YcjX family protein
1027	 53.89	0	1020755..1021255	-	166	163843304	-	BSUIS_A1079	-	phosphohistidine phosphatase, SixA
1028	 51.80	-1	1021651..1022067	+	138	163843305	dksA	BSUIS_A1080	-	RNA polymerase-binding protein DksA
1029	 60.30	0	1022213..1023469	-	418	163843306	-	BSUIS_A1081	-	basic proline-rich protein precursor
1030	 58.58	0	1023836..1026532	+	898	163843307	-	BSUIS_A1082	-	PAS domain-containing protein
1031	 57.49	0	1026557..1027765	+	402	163843308	-	BSUIS_A1083	-	hypothetical protein
1032	 55.56	0	1027796..1029118	+	440	163843309	-	BSUIS_A1084	-	beta-lactamase
1033	 57.49	0	1030426..1034229	-	1267	163843310	-	BSUIS_A1086	-	ribonucleotide-diphosphate reductase subunit alpha
1034	 47.50	-2	1034282..1034521	+	79	163843311	-	BSUIS_A1087	-	hypothetical protein
1035	 59.51	0	1034931..1035419	-	162	163843312	-	BSUIS_A1088	-	diphosphoinositol polyphosphate phosphohydrolase 3 beta
1036	 57.83	0	1035660..1036157	-	165	163843313	gpt	BSUIS_A1089	-	xanthine-guanine phosphoribosyltransferase
1037	 59.22	0	1036607..1037452	-	281	163843314	-	BSUIS_A1090	-	UspA domain-containing protein
1038	 57.58	0	1037530..1038288	-	252	163843315	-	BSUIS_A1091	-	molybdopterin binding domain-containing protein
1039	 59.00	0	1038449..1039048	+	199	163843316	wrbA	BSUIS_A1092	-	TrpR binding protein WrbA
1040	 50.67	-1	1039026..1039175	-	49	163843317	-	BSUIS_A1093	-	hypothetical protein
1041	 54.24	0	1039253..1040443	+	396	163843318	ilvA	BSUIS_A1095	-	threonine dehydratase biosynthetic
1042	 62.13	+1	1040510..1042117	+	535	163843319	-	BSUIS_A1096	-	DEAD/DEAH box helicase domain-containing protein
1043	 57.82	0	1042288..1043316	+	342	163843320	-	BSUIS_A1097	-	cysteine synthase A
1044	 55.91	0	1043319..1044062	+	247	163843321	alaS	BSUIS_A1098	-	alanyl-tRNA synthetase
1045	 58.25	0	1044089..1044943	+	284	163843322	-	BSUIS_A1099	-	3-mercaptopyruvate sulfurtransferase
1046	 54.50	0	1045049..1045459	+	136	163843323	-	BSUIS_A1100	-	GCN5-related N-acetyltransferase
1047	 56.60	0	1045498..1046292	-	264	163843324	-	BSUIS_A1101	-	diguanylate cyclase
1048	 55.26	0	1046857..1048347	-	496	163843325	-	BSUIS_A1102	-	Acetyl-CoA hydrolase
1049	 56.55	0	1048612..1050153	-	513	163843326	-	BSUIS_A1103	-	EmrB/QacA family drug resistance transporter
1050	 57.58	0	1050153..1051253	-	366	163843327	-	BSUIS_A1104	-	HlyD family protein secretion protein
1051	 62.20	+1	1051647..1052630	+	327	163843328	-	BSUIS_A1105	-	zinc-binding alcohol dehydrogenase family protein
1052	 58.44	0	1052674..1053816	-	380	163843329	pepQ	BSUIS_A1106	-	Xaa-Pro dipeptidase
1053	 55.84	0	1054075..1054905	-	276	163843330	-	BSUIS_A1107	-	methyltransferase type 12
1054	 55.38	0	1055014..1055979	-	321	163843331	-	BSUIS_A1108	-	Sodium/bile acid cotransporter 7
1055	 50.98	-1	1056007..1056159	-	50	163843332	-	BSUIS_A1109	-	hypothetical protein
1056	 53.97	0	1056108..1057115	-	335	163843333	galE	BSUIS_A1110	-	UDP-glucose 4-epimerase
1057	 56.37	0	1058093..1058704	-	203	163843334	-	BSUIS_A1112	-	hypothetical protein
1058	 58.12	0	1058747..1059331	-	194	163843335	-	BSUIS_A1113	-	nitroreductase
1059	 57.37	0	1059551..1060561	+	336	163843336	-	BSUIS_A1114	-	hypothetical protein
1060	 56.50	0	1060616..1062592	-	658	163843337	thrS	BSUIS_A1115	-	threonyl-tRNA synthetase
1061	 58.07	0	1062807..1064039	-	410	163843338	-	BSUIS_A1116	-	Serine-type D-Ala-D-Ala carboxypeptidase
1062	 60.00	0	1064146..1064625	-	159	163843339	-	BSUIS_A1117	-	hypothetical protein
1063	 57.37	0	1064519..1064959	-	146	163843340	-	BSUIS_A1118	-	NifU domain-containing protein
1064	 57.01	0	1065223..1065864	+	213	163843341	folE	BSUIS_A1119	-	GTP cyclohydrolase I
1065	 57.14	0	1065887..1066306	+	139	163843342	hisI	BSUIS_A1120	-	phosphoribosyl-AMP cyclohydrolase
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.