IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
778	 63.04	0	896577..897017	-	146	146337953	-	BRADO0844	-	hypothetical protein
779	 63.21	0	897092..897409	-	105	146337954	-	BRADO0845	-	hypothetical protein
780	 63.91	0	897752..898150	+	132	146337955	-	BRADO0846	-	hypothetical protein
781	 67.84	0	899129..901168	-	679	146337956	-	BRADO0847	-	hypothetical protein
782	 69.83	+1	901295..901990	-	231	146337957	-	BRADO0848	-	hypothetical protein
783	 70.14	+1	902097..902786	+	229	146337958	-	BRADO0849	-	putative haloacid dehalogenase-like hydrolase; putative phosphoglycolate phosphatase
784	 65.00	0	902965..904944	+	659	146337959	-	BRADO0850	-	hypothetical protein
785	 62.46	-1	905519..906112	-	197	146337960	-	BRADO0852	-	hypothetical protein
786	 66.31	0	906429..907262	+	277	146337961	-	BRADO0853	-	hypothetical protein
787	 65.70	0	907299..908129	+	276	146337962	-	BRADO0854	-	putative glutamine amidotransferase, class-I
788	 70.04	+1	908134..908844	-	236	146337963	-	BRADO0855	-	putative murein hydrolase export regulator, LrgB family protein
789	 66.67	0	908819..909169	-	116	146337964	-	BRADO0856	-	hypothetical protein
790	 67.80	0	909349..910230	+	293	146337965	-	BRADO0857	-	LysR family transcriptional regulator
791	 63.77	0	910333..910539	+	68	146337966	-	BRADO0858	-	hypothetical protein
792	 64.13	0	910668..911495	+	275	146337967	-	BRADO0859	-	putative glutamine amidotransferase, class-II
793	 64.92	0	911520..913289	+	589	146337968	-	BRADO0860	-	asparagine synthetase
794	 65.21	0	913309..914541	+	410	146337969	-	BRADO0861	-	carboxylate-amine ligase
795	 66.42	0	914548..915750	-	400	146337970	-	BRADO0862	-	cytosine deaminase
796	 69.98	+1	915840..916472	-	210	146337971	-	BRADO0863	-	putative phospholipase/carboxylesterase family protein
797	 66.67	0	916469..917407	-	312	146337972	-	BRADO0864	-	putative glyoxalase/bleomycin resistance protein/dioxygenase family protein
798	 66.67	0	917544..918437	+	297	146337973	-	BRADO0865	-	transcriptional regulator
799	 63.87	0	918529..918885	+	118	146337974	-	BRADO0866	-	putative transthyretin-like protein
800	 65.13	0	918891..920318	+	475	146337975	-	BRADO0867	-	putative polysaccharide deacetylase family protein
801	 68.87	0	920427..921785	-	452	146337976	-	BRADO0868	-	putative glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A)
802	 70.03	+1	921772..922962	-	396	146337977	-	BRADO0869	-	major facilitator superfamily permease
803	 64.04	0	922992..923333	+	113	146337978	-	BRADO0870	-	putative transthyretin-like protein
804	 64.83	0	923501..924316	-	271	146337979	-	BRADO0871	-	ABC transporter permease
805	 65.42	0	924313..925194	-	293	146337980	-	BRADO0872	-	ABC transporter permease
806	 63.61	0	925199..926245	-	348	146337981	-	BRADO0873	-	ABC transporter substrate-binding protein
807	 66.67	0	926270..927355	-	361	146337982	-	BRADO0874	-	putative ABC transporter ATP-binding protein
808	 69.47	+1	927526..928275	-	249	146337983	-	BRADO0875	-	putative Hydantoin racemase
809	 68.79	0	928341..928811	-	156	146337984	-	BRADO0876	-	hypothetical protein
810	 71.19	+1	928817..928993	-	58	146337985	-	BRADO0877	-	hypothetical protein
811	 70.40	+1	929001..929777	-	258	146337986	-	BRADO0878	-	putative Short-chain dehydrogenase/reductase (SDR) family protein; putative glucose/ribitol dehydrogenase
812	 67.47	0	930001..930750	+	249	146337987	-	BRADO0879	-	putative ABC transporter ATP-binding protein
813	 69.55	+1	930747..932273	+	508	146337988	-	BRADO0880	-	putative permease
814	 68.28	0	932279..933205	-	308	146337989	-	BRADO0881	-	alpha/beta family hydrolase
815	 66.54	0	933316..934134	+	272	146337990	-	BRADO0882	-	putative metal-dependent hydrolase
816	 65.78	0	934137..934589	-	150	146337991	-	BRADO0883	-	putative RmlC-like cupin family protein
817	 67.31	0	934917..935381	+	154	146337992	-	BRADO0884	-	putative signal peptide
818	 66.27	0	935466..936722	-	418	146337993	-	BRADO0885	-	peptidase M29, aminopeptidase II
819	 66.33	0	938182..938775	+	197	146337994	-	BRADO0887	-	hypothetical protein
820	 63.33	0	938946..939545	-	199	146337995	-	BRADO0888	-	putative glyoxylase family protein
821	 69.46	+1	939907..940623	-	238	146337996	-	BRADO0889	-	short chain dehydrogenase
822	 67.36	0	940620..941480	-	286	146337997	-	BRADO0890	-	peptide ABC transporter ATP-binding protein
823	 70.09	+1	941477..942352	-	291	146337998	-	BRADO0891	-	peptide ABC transporter ATP-binding protein
824	 68.89	0	942349..943248	-	299	146337999	-	BRADO0892	-	peptide ABC transporter permease
825	 68.15	0	943245..944252	-	335	146338000	-	BRADO0893	-	peptide ABC transporter permease
826	 63.55	0	944267..945808	-	513	146338001	-	BRADO0894	-	peptide ABC transporter substrate-binding protein
827	 65.22	0	945898..947142	-	414	146338002	-	BRADO0895	-	putative carboxymethylenebutenolidase (dienelactone hydrolase)(DLH)
828	 68.53	0	947298..947942	+	214	146338003	-	BRADO0896	-	putative transcriptional regulatory protein
829	 68.65	0	947949..949259	-	436	146338004	-	BRADO0897	-	multidrug ABC transporter transmembrane protein
830	 66.40	0	949547..951022	+	491	146338005	-	BRADO0898	-	putative amidase
831	 69.03	0	951043..951762	-	239	146338006	-	BRADO0899	-	putative signal peptide
832	 64.92	0	952383..958793	+	2136	146338007	-	BRADO0900	-	VBCS repeat-containing protein
833	 63.00	0	958900..961134	+	744	146338008	-	BRADO0901	-	adenylate/guanylyl cyclase
834	 63.70	0	961415..962998	-	527	146338009	-	BRADO0902	-	ABC transporter substrate-binding protein
835	 65.95	0	963205..964878	+	557	146338010	-	BRADO0903	-	putative oligopeptide ABC transporter (substrate binding protein)
836	 66.46	0	965009..965962	+	317	146338011	-	BRADO0904	-	putative oligopeptide ABC transporter (permease protein)
837	 63.66	0	965971..966867	+	298	146338012	-	BRADO0905	-	putative oligopeptide ABC transporter (permease protein)
838	 66.29	0	967079..968128	+	349	146338013	-	BRADO0906	-	putative oligopeptide ABC transporter ATP-binding protein
839	 65.66	0	968157..968354	+	65	146338014	-	BRADO0907	-	hypothetical protein
840	 69.43	+1	968351..969763	+	470	146338015	-	BRADO0908	-	putative glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A)
841	 69.01	0	970071..971051	+	326	146338016	-	BRADO0909	-	putative oligopeptide ABC transporter ATP-binding protein
842	 64.81	0	971176..971445	+	89	146338017	-	BRADO0910	-	putative transglycosylase-associated protein
843	 68.90	0	971633..973381	+	582	146338018	-	BRADO0911	-	HlyB family ABC transporter ATP-binding protein
844	 67.12	0	973395..974732	+	445	146338019	-	BRADO0912	-	HlyD family secretion protein
845	 68.94	0	975129..975611	-	160	146338020	-	BRADO0913	-	putative competence-damaged protein
846	 65.68	0	975694..977007	-	437	146338021	citA	BRADO0914	-	citrate transporter
847	 67.32	0	977128..978048	-	306	146338022	-	BRADO0915	-	DNA-binding transcriptional activator GcvA
848	 68.89	0	978185..978364	+	59	146338023	-	BRADO0916	-	hypothetical protein
849	 68.21	0	978512..979030	+	172	146338024	-	BRADO0917	-	hypothetical protein
850	 70.09	+1	979451..980152	-	233	146338025	-	BRADO0918	-	putative 3-oxoacyl-[acyl-carrier-protein] reductase
851	 65.69	0	980255..981274	-	339	146338026	-	BRADO0919	-	hypothetical protein
852	 66.72	0	981385..983169	+	594	146338027	-	BRADO0920	-	putative acyl-CoA dehydrogenase
853	 65.20	0	983456..984544	+	362	146338028	adh	BRADO0921	-	alcohol dehydrogenase
854	 68.84	0	984832..986301	-	489	146338029	-	BRADO0922	-	amidase
855	 64.78	0	986383..986913	-	176	146338030	-	BRADO0923	-	putative cytochrome b561
856	 66.46	0	986987..987958	-	323	146338031	-	BRADO0924	-	hypothetical protein
857	 64.04	0	988160..988882	+	240	146338032	-	BRADO0925	-	hypothetical protein
858	 65.19	0	989190..989594	-	134	146338033	-	BRADO0926	-	hypothetical protein
859	 65.92	0	989669..990739	-	356	146338034	-	BRADO0927	-	putative epoxide hydrolase
860	 63.54	0	991001..992536	-	511	146338035	-	BRADO0928	-	acyl-CoA synthetase
861	 67.26	0	992710..993882	-	390	146338036	-	BRADO0929	-	acetyl-CoA acetyltransferase
862	 62.58	0	994020..994679	+	219	146338037	-	BRADO0930	-	TetR family transcriptional regulator
863	 68.51	0	994744..995502	+	252	146338038	Hadh2	BRADO0931	-	3-hydroxyacyl-CoA dehydrogenase (short-chain)
864	 65.22	0	995632..996462	+	276	146338039	-	BRADO0932	-	putative enoyl-CoA hydratase
865	 66.51	0	996504..998372	+	622	146338040	-	BRADO0933	-	acyl-CoA synthetase
866	 67.46	0	998547..999674	+	375	146338041	-	BRADO0934	-	putative acyl-CoA dehydrogenase
867	 66.51	0	999927..1001171	+	414	146338042	-	BRADO0935	-	putative acyl-CoA dehydrogenase
868	 66.19	0	1001292..1002539	+	415	146338043	-	BRADO0936	-	putative acyl-CoA dehydrogenase
869	 66.20	0	1002722..1003369	+	215	146338044	-	BRADO0937	-	putative nitroreductase
870	 62.05	-1	1003818..1004012	+	64	146338045	-	BRADO0940	-	hypothetical protein
871	 59.06	-2	1003948..1004631	-	227	146338046	-	BRADO0941	-	putative autoinducer (acylhomoserine lactone) synthase
872	 65.71	0	1004714..1005442	-	242	146338047	-	BRADO0942	-	putative N-acyl homoserine lactone transcriptional regulator, LuxR-like
873	 67.54	0	1005606..1006403	-	265	146338048	-	BRADO0943	-	putative enoyl-CoA hydratase
874	 67.83	0	1006400..1007515	-	371	146338049	-	BRADO0944	-	hypothetical protein
875	 62.33	-1	1007820..1008488	+	222	146338050	-	BRADO0945	-	hypothetical protein
876	 68.48	0	1008509..1009390	+	293	146338051	-	BRADO0946	-	hypothetical protein
877	 59.54	-1	1009687..1010037	+	116	146338052	-	BRADO0947	-	hypothetical protein
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.