IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
677	 66.67	0	774621..774950	-	109	146337852	ptsH	BRADO0733	-	PTS system phosphocarrier protein HPr (histidine-containing protein)
678	 67.87	0	774947..775195	-	82	146337853	-	BRADO0734	-	PTS system permease (IIAMan), nitrogen regulatory IIA protein (fragment)
679	 68.21	0	775552..776004	-	150	146337854	-	BRADO0735	-	putative HPr kinase/phosphorylase
680	 67.28	0	776001..777800	-	599	146337855	chvG	BRADO0736	-	two component sensor protein chvG (histidine kinase sensory protein exoS)
681	 62.54	0	778001..778702	-	233	146337856	chvI	BRADO0738	-	two-component transcriptional regulatory protein ChvI
682	 65.30	0	778919..779650	+	243	146337857	-	BRADO0739	-	putative pyridoxamine 5'-phosphate oxidase-like, FMN-binding
683	 64.56	0	780390..782003	+	537	146337858	pckA	BRADO0741	-	phosphoenolpyruvate carboxykinase
684	 66.18	0	782249..783067	-	272	146337859	-	BRADO0742	-	putative thioesterase/thiol ester dehydrase-isomerase
685	 65.39	0	783173..785680	-	835	146337860	glgP	BRADO0743	-	glycogen phosphorylase
686	 66.90	0	786364..786795	+	143	146337861	-	BRADO0746	-	hypothetical protein
687	 71.65	+1	786811..787632	-	273	146337862	-	BRADO0747	-	putative signal peptide
688	 67.92	0	787819..788376	-	185	146337863	pyrE	BRADO0748	-	orotate phosphoribosyltransferase
689	 66.51	0	788597..789223	+	208	146337864	-	BRADO0749	-	putative glutathione S-transferase
690	 66.98	0	789558..790847	-	429	146337865	-	BRADO0750	-	hypothetical protein
691	 68.87	0	790908..792089	-	393	146337866	-	BRADO0751	-	hypothetical protein
692	 66.12	0	793323..796427	-	1034	146337867	polA	BRADO0752	-	DNA polymerase I
693	 64.20	0	796638..797690	-	350	146337868	-	BRADO0753	-	putative acyltransferase family protein
694	 66.74	0	797842..799161	+	439	146337869	rkpK	BRADO0754	-	UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH)
695	 72.00	+1	799281..801755	+	824	146337870	hrpB	BRADO0755	-	ATP-dependent helicase
696	 69.26	+1	801916..802416	+	166	146337871	-	BRADO0756	-	putative protease
697	 63.13	0	802600..804099	+	499	146337872	-	BRADO0757	-	putative phosphomannomutase/phosphoglucomutase (PMM / PGM)
698	 66.33	0	804162..805652	-	496	146337873	-	BRADO0758	-	putative methyl-accepting chemotaxis protein
699	 65.95	0	805649..805927	-	92	146337874	-	BRADO0759	-	hypothetical protein
700	 63.07	0	806121..806621	-	166	146337875	-	BRADO0760	-	AsnC/Lrp family transcriptional regulator
701	 66.14	0	806728..807675	-	315	146337876	-	BRADO0761	-	putative mutT/Nudix hydrolase family protein; putative NADH pyrophosphatase
702	 64.76	0	807679..808098	-	139	146337877	-	BRADO0762	-	putative histidine triad (HIT) protein
703	 68.13	0	808492..810339	+	615	146337878	-	BRADO0763	-	DNA polymerase III subunits gamma and tau
704	 63.24	0	810360..810680	+	106	146337879	-	BRADO0764	-	putative YbaB family protein
705	 68.50	0	810701..811300	+	199	146337880	recR	BRADO0765	-	recombination protein RecR
706	 66.67	0	811318..811746	+	142	146337881	-	BRADO0766	-	hypothetical protein
707	 68.26	0	811913..813295	-	460	146337882	-	BRADO0767	-	major facilitator superfamily permease
708	 54.34	-2	813467..813685	-	72	146337883	-	BRADO0768	-	excinuclease ABC subunit C
709	 66.51	0	813778..815022	-	414	146337884	-	BRADO0769	-	putative RmuC family protein
710	 63.07	0	815192..815719	+	175	146337885	def	BRADO0770	-	peptide deformylase (PDF) (polypeptide deformylase)
711	 69.34	+1	815861..816796	+	311	146337886	fmt	BRADO0771	-	methionyl-tRNA formyltransferase
712	 66.53	0	816913..817650	+	245	146337887	truA	BRADO0772	-	tRNA pseudouridine synthase A
713	 69.05	0	817812..819869	+	685	146337888	-	BRADO0773	-	putative methyl-accepting chemotaxis protein
714	 65.97	0	819889..821043	-	384	146337889	dapE	BRADO0774	-	succinyl-diaminopimelate desuccinylase
715	 69.27	+1	821104..821949	-	281	146337890	dapD	BRADO0775	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
716	 64.94	0	822312..823007	-	231	146337891	-	BRADO0776	-	pyrimidine 5-nucleotidase
717	 66.85	0	823228..824295	-	355	146337892	-	BRADO0777	-	hypothetical protein
718	 64.55	0	824382..825278	-	298	146337893	argB	BRADO0779	-	acetylglutamate kinase
719	 72.36	+1	825355..825723	-	122	146337894	-	BRADO0780	-	hypothetical protein
720	 67.12	0	825720..826379	-	219	146337895	-	BRADO0781	-	GTPase EngB
721	 63.56	0	826512..828380	-	622	146337896	oaxA	BRADO0782	-	putative inner membrane protein translocase component YidC
722	 70.34	+1	828403..828810	-	135	146337897	rnpA	BRADO0783	-	ribonuclease P protein component (RNaseP protein) (protein C5)
723	 71.85	+1	828842..828976	-	44	146337898	rpmH	BRADO0784	-	50S ribosomal protein L34
724	 67.68	0	829469..830944	+	491	146337899	-	BRADO0785	-	putative sensor histidine kinase
725	 59.74	-1	831451..831681	-	76	146337900	-	BRADO0787	-	putative transcriptional regulator
726	 57.86	-2	831774..832250	+	158	146337901	-	BRADO0788	-	hypothetical protein
727	 64.21	0	832772..833137	+	121	146337902	-	BRADO0790	-	putative thiamine-phosphate diphosphorylase
728	 69.23	+1	833151..833423	+	90	146337903	-	BRADO0791	-	thiamine-phosphate pyrophosphorylase (TMP pyrophosphorylase) (TMP-PPase) (thiamine-phosphate synthase) (fragment)
729	 60.29	-1	833507..835609	-	700	146337904	-	BRADO0792	-	hypothetical protein
730	 58.62	-2	835631..836512	-	293	146337905	-	BRADO0793	-	hypothetical protein
731	 61.67	-1	836911..837531	-	206	146337906	-	BRADO0794	-	hypothetical protein
732	 63.64	0	838044..838274	+	76	146337907	-	BRADO0795	-	hypothetical protein
733	 65.97	0	838281..841292	-	1003	146337908	-	BRADO0796	-	putative conjugal transfer protein, traA
734	 63.61	0	841463..841789	+	108	146337909	-	BRADO0797	-	putative conjugal transfer protein, traC
735	 69.79	+1	841737..841832	-	31	146337910	-	BRADO0798	-	hypothetical protein
736	 64.43	0	842357..844099	+	580	146337911	-	BRADO0799	-	hypothetical protein
737	 62.23	-1	844096..845514	+	472	146337912	-	BRADO0800	-	hypothetical protein
738	 55.94	-2	845774..846985	-	403	146337913	-	BRADO0801	-	hypothetical protein
739	 57.08	-2	847472..847690	+	72	146337914	-	BRADO0802	-	hypothetical protein
740	 61.74	-1	847724..847987	+	87	146337915	-	BRADO0803	-	hypothetical protein
741	 55.08	-2	848048..848824	+	258	146337916	-	BRADO0804	-	hypothetical protein
742	 53.36	-2	848988..849896	+	302	146337917	-	BRADO0805	-	hypothetical protein
743	 60.91	-1	850867..852099	+	410	146337918	-	BRADO0807	-	putative subtilisin-like serine protease
744	 64.61	0	852784..853998	+	404	146337919	-	BRADO0808	-	putative trypsin-like serine protease
745	 65.54	0	853995..857090	+	1031	146337920	-	BRADO0809	-	hypothetical protein
746	 60.67	-1	857060..857209	-	49	146337921	-	BRADO0810	-	hypothetical protein
747	 61.50	-1	857228..859474	+	748	146337922	-	BRADO0811	-	hypothetical protein
748	 62.74	0	859526..861946	+	806	146337923	-	BRADO0812	-	hypothetical protein
749	 63.06	0	862019..863821	-	600	146337924	-	BRADO0813	-	hypothetical protein
750	 63.64	0	863927..864982	+	351	146337925	-	BRADO0814	-	hypothetical protein
751	 64.69	0	864954..866270	-	438	146337926	-	BRADO0815	-	hypothetical protein
752	 54.83	-2	867180..868472	-	430	146337927	-	BRADO0817	-	putative phage integrase
753	 67.13	0	868768..869841	+	357	146337928	hisC	BRADO0818	-	histidinol-phosphate aminotransferase
754	 68.77	0	869982..871076	-	364	146337929	cheB	BRADO0819	-	chemotaxis response regulator protein CheB-glutamate methylesterase
755	 63.27	0	871090..871914	-	274	146337930	cheR	BRADO0820	-	chemotaxis protein methyltransferase
756	 64.62	0	871952..872440	-	162	146337931	cheW	BRADO0821	-	chemotaxis protein cheW
757	 66.72	0	872522..874336	-	604	146337932	-	BRADO0822	-	methyl-accepting chemotaxis receptor (MCP)
758	 67.90	0	874393..876096	-	567	146337933	-	BRADO0823	-	methyl-accepting chemotaxis protein (MCP)
759	 63.01	0	876125..876589	-	154	146337934	cheW	BRADO0824	-	chemotaxis protein cheW
760	 67.69	0	876589..878646	-	685	146337935	cheA	BRADO0825	-	chemotaxis protein cheA
761	 63.58	0	878717..879040	-	107	146337936	-	BRADO0826	-	hypothetical protein
762	 67.69	0	879242..880219	-	325	146337937	-	BRADO0827	-	putative cobalamin biosynthesis protein CobT
763	 69.95	+1	880267..881118	-	283	146337938	-	BRADO0828	-	hypothetical protein
764	 67.18	0	881091..881669	-	192	146337939	-	BRADO0829	-	hypothetical protein
765	 68.88	0	881741..882418	-	225	146337940	-	BRADO0830	-	Zn-dependent protease
766	 69.80	+1	882375..882629	-	84	146337941	-	BRADO0831	-	hypothetical protein
767	 67.20	0	882639..882824	-	61	146337942	-	BRADO0832	-	hypothetical protein
768	 68.84	0	882825..884018	-	397	146337943	-	BRADO0833	-	hypothetical protein
769	 70.01	+1	884015..884941	-	308	146337944	-	BRADO0834	-	putative signal peptide
770	 68.92	0	885023..886399	-	458	146337945	-	BRADO0835	-	hypothetical protein
771	 67.11	0	886401..887537	-	378	146337946	-	BRADO0836	-	putative ATPase family protein
772	 71.76	+1	887534..888928	-	464	146337947	-	BRADO0837	-	hypothetical protein
773	 72.20	+1	888931..890394	-	487	146337948	-	BRADO0838	-	hypothetical protein
774	 67.03	0	890518..892188	-	556	146337949	-	BRADO0839	-	hypothetical protein
775	 65.71	0	892622..893776	-	384	146337950	-	BRADO0840	-	putative signal peptide
776	 65.93	0	893993..894943	-	316	146337951	-	BRADO0841	-	oxidoreductase
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.