IslandPathversion 1.0

IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.78 STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4018	 61.65	-1	4469419..4470216	-	265	146341193	-	BRADO4267	-	transposase
4019	 59.70	-1	4470273..4470674	-	133	146341194	-	BRADO4268	-	putative transposase
4020	 66.06	0	4470906..4472060	-	384	146341195	ssuD	BRADO4269	-	putative alkanesulfonate monooxygenase (FMNH2-dependent aliphatic sulfonate monooxygenase)
4021	 69.00	0	4472295..4473152	+	285	146341196	ssuC	BRADO4270	-	putative sulfonate ABC transporter, permease protein
4022	 72.78	+2	4473149..4473868	+	239	146341197	ssuB	BRADO4271	-	putative sulfonate ABC transporter, ATP-binding protein
4023	 64.80	0	4473887..4474903	+	338	146341198	ssuA	BRADO4272	-	putative sulfonate ABC transporter, periplasmic-binding protein
4024	 66.67	0	4474941..4476170	+	409	146341199	-	BRADO4273	-	putative acyl-CoA dehydrogenase
4025	 67.55	0	4476206..4476772	+	188	146341200	-	BRADO4274	-	putative monooxygenase/flavin reductase-like, FMN-binding
4026	 66.67	0	4476797..4477756	+	319	146341201	srpH	BRADO4275	-	serine acetyltransferase (cysE-like)
4027	 62.46	-1	4477813..4478145	-	110	146341202	-	BRADO4276	-	hypothetical protein
4028	 66.96	0	4478234..4479577	+	447	146341203	ntaA	BRADO4277	-	nitrilotriacetate monooxygenase component A (NTA monooxygenase component A) (NTA-MO A)
4029	 61.96	-1	4479665..4480492	+	275	146341204	-	BRADO4278	-	putative D-methionine ABC transporter, perisplasmic binding lipoprotein (metQ-like)
4030	 69.36	+1	4480544..4481398	-	284	146341205	-	BRADO4279	-	putative nitroreductase family protein; putative oxygen-insensitive NADPH nitroreductase (NfsA-like)
4031	 66.76	0	4481538..4482596	-	352	146341206	-	BRADO4280	-	putative luciferase-like monooxygenase
4032	 68.69	0	4482657..4482755	-	32	146341207	-	BRADO4281	-	hypothetical protein
4033	 66.67	0	4482752..4483126	-	124	146341208	-	BRADO4282	-	putative ferrodoxin homolog (AsfB-like)
4034	 70.61	+1	4483123..4484718	-	531	146341209	-	BRADO4283	-	putative oxidoreductase (AsfA-like), putative L-aspartate oxidase
4035	 67.89	0	4485126..4486592	+	488	146341210	-	BRADO4284	-	hypothetical protein
4036	 62.81	0	4486574..4487350	-	258	146341211	metQ	BRADO4285	-	D-methionine ABC transporter protein, periplasmic binding protein
4037	 64.24	0	4487609..4488391	-	260	146341212	-	BRADO4286	-	hypothetical protein
4038	 69.22	+1	4488443..4489108	-	221	146341213	metI	BRADO4287	-	D-and L-methionine ABC transporter, permease protein
4039	 66.95	0	4489098..4490165	-	355	146341214	metN	BRADO4288	-	D-and L-methionine ABC transporter, ATP binding protein
4040	 66.31	0	4490375..4491220	-	281	146341215	-	BRADO4289	-	hypothetical protein
4041	 62.75	0	4491217..4491420	-	67	146341216	-	BRADO4290	-	hypothetical protein
4042	 68.09	0	4491605..4491886	+	93	146341217	-	BRADO4291	-	hypothetical protein
4043	 65.07	0	4491925..4492863	-	312	146341218	-	BRADO4292	-	putative alpha-ketoglutarate-dependent taurine dioxygenase (TauD-like) (2-aminoethanesulfonate dioxygenase) (Sulfate starvation-induced protein 3) (SSI3)
4044	 64.25	0	4492894..4493100	-	68	146341219	-	BRADO4293	-	hypothetical protein
4045	 63.10	0	4493704..4494096	+	130	146341220	-	BRADO4296	-	putative insertion element (IS) transposase
4046	 60.19	-1	4494631..4495818	+	395	146341221	-	BRADO4297	-	acyltransferase family 3 protein
4047	 59.01	-2	4495944..4496165	+	73	146341222	-	BRADO4298	-	hypothetical protein
4048	 60.85	-1	4496239..4496616	+	125	146341223	-	BRADO4299	-	hypothetical protein
4049	 54.64	-2	4496869..4497051	+	60	146341224	-	BRADO4300	-	hypothetical protein
4050	 62.32	-1	4497192..4497398	+	68	146341225	-	BRADO4301	-	hypothetical protein
4051	 60.18	-1	4497455..4497901	-	148	146341226	-	BRADO4302	-	hypothetical protein
4052	 60.87	-1	4497951..4498364	-	137	146341227	-	BRADO4303	-	hypothetical protein
4053	 63.94	0	4498525..4499001	-	158	146341228	-	BRADO4304	-	hypothetical protein
4054	 64.57	0	4499119..4499835	-	238	146341229	-	BRADO4305	-	hypothetical protein
4055	 67.45	0	4500040..4500423	+	127	146341230	-	BRADO4306	-	putative glyoxalase
4056	 64.72	0	4500436..4500897	-	153	146341231	-	BRADO4307	-	hypothetical protein
4057	 66.11	0	4501036..4503717	-	893	146341232	-	BRADO4308	-	sensor histidine kinase
4058	 67.04	0	4503830..4504633	-	267	146341233	-	BRADO4309	-	putative NUDIX hydrolase
4059	 68.45	0	4504636..4505589	-	317	146341234	-	BRADO4310	-	putative dihydrodipicolinate synthetase
4060	 66.21	0	4505747..4506625	-	292	146341235	-	BRADO4311	-	putative short-chain dehydrogenase/reductase (SDR)
4061	 67.13	0	4506828..4507688	-	286	146341236	-	BRADO4312	-	putative dehydratase (MaoC-like)
4062	 61.28	-1	4507939..4508328	-	129	146341237	-	BRADO4313	-	hypothetical protein
4063	 65.62	0	4508328..4509476	-	382	146341238	-	BRADO4314	-	acetyl-CoA acetyltransferase
4064	 68.60	0	4509985..4510242	-	85	146341239	-	BRADO4315	-	hypothetical protein
4065	 56.90	-2	4510448..4510918	-	156	146341240	-	BRADO4316	-	hypothetical protein
4066	 66.21	0	4511155..4514646	-	1163	146341241	-	BRADO4317	-	indolepyruvate ferredoxin oxidoreductase
4067	 54.63	-2	4514722..4514937	-	71	146341242	-	BRADO4318	-	hypothetical protein
4068	 66.20	0	4514953..4515597	-	214	146341243	-	BRADO4319	-	hypothetical protein
4069	 68.02	0	4515734..4516177	+	147	146341244	-	BRADO4320	-	hypothetical protein
4070	 67.63	0	4516436..4516747	+	103	146341245	-	BRADO4321	-	hypothetical protein
4071	 66.18	0	4516818..4517633	-	271	146341246	-	BRADO4322	-	putative methylisocitrate lyase or carboxyvinyl-carboxyphosphonate phosphorylmutase
4072	 61.27	-1	4517679..4517993	-	104	146341247	-	BRADO4323	-	hypothetical protein
4073	 70.37	+1	4518069..4518770	+	233	146341248	-	BRADO4324	-	Ars family transcriptional regulator
4074	 63.68	0	4518881..4519885	+	334	146341249	-	BRADO4325	-	putative alpha/beta hydrolase; putative prolyl aminopeptidase
4075	 68.29	0	4519945..4520190	-	81	146341250	-	BRADO4326	-	hypothetical protein
4076	 65.79	0	4520267..4520608	-	113	146341251	-	BRADO4327	-	hypothetical protein
4077	 64.76	0	4520736..4521050	-	104	146341252	-	BRADO4328	-	hypothetical protein
4078	 69.61	+1	4521086..4521799	-	237	146341253	-	BRADO4329	-	hypothetical protein
4079	 68.22	0	4521972..4522292	-	106	146341254	-	BRADO4330	-	hypothetical protein
4080	 64.71	0	4522810..4524342	-	510	146341255	-	BRADO4331	-	putative propionyl-CoA carboxylase beta chain
4081	 72.37	+1	4524568..4525251	+	227	146341256	-	BRADO4332	-	hypothetical protein
4082	 59.41	-1	4525701..4526003	+	100	146341257	-	BRADO4333	-	hypothetical protein
4083	 66.78	0	4526244..4527164	-	306	146341258	-	BRADO4334	-	putative RNA polymerase sigma subunit
4084	 67.46	0	4527161..4527919	-	252	146341259	-	BRADO4335	-	putative dehydrogenase/oxidoreductase
4085	 67.83	0	4528061..4529266	+	401	146341260	-	BRADO4336	-	putative peptidase
4086	 64.69	0	4529551..4530006	-	151	146341261	-	BRADO4337	-	putative ABC-type ribose transport system, auxiliary component
4087	 68.68	0	4530022..4530369	-	115	146341262	-	BRADO4338	-	hypothetical protein
4088	 67.38	0	4530614..4531036	+	140	146341263	-	BRADO4339	-	putative ribonucleotide reductase
4089	 65.46	0	4531047..4531544	+	165	146341264	-	BRADO4340	-	putative cytidine/deoxycytidylate deaminase
4090	 64.71	0	4531640..4532047	+	135	146341265	-	BRADO4341	-	hypothetical protein
4091	 69.26	+1	4532758..4534686	+	642	146341266	-	BRADO4343	-	putative sigma-54-dependent transcriptional regulator; putative transcriptional activator of acetoin/glycerol metabolism.
4092	 67.03	0	4534807..4536435	-	542	146341267	groEL	BRADO4344	-	chaperonin GroEL
4093	 64.77	0	4536506..4537294	-	262	146341268	-	BRADO4345	-	hypothetical protein
4094	 59.54	-1	4537300..4538337	-	345	146341269	-	BRADO4346	-	putative amidohydrolase
4095	 56.30	-2	4538443..4538799	-	118	146341270	-	BRADO4347	-	putative methane/phenol/toluene monooxygenase (B subunit)
4096	 63.19	0	4538842..4539933	-	363	146341271	-	BRADO4348	-	putative methane/phenol/toluene monooxygenase (A subunit, beta chain)
4097	 63.21	0	4539982..4541052	-	356	146341272	-	BRADO4349	-	putative ferredoxin--NAD(+) reductase; putative phenol hydroxylase (phenol 2-monooxygenase P5 component)
4098	 62.12	-1	4541119..4542789	-	556	146341273	-	BRADO4350	-	putative methane/phenol/toluene monooxygenase (A subunit, Alpha chain)
4099	 68.67	0	4542959..4543258	-	99	146341274	-	BRADO4351	-	hypothetical protein
4100	 68.25	0	4543255..4543632	-	125	146341275	-	BRADO4352	-	hypothetical protein
4101	 63.98	0	4543684..4544727	-	347	146341276	-	BRADO4353	-	putative alcohol dehydrogenase (Zinc-containing)(AdhT-like)
4102	 67.46	0	4545051..4546952	+	633	146341277	-	BRADO4355	-	sigma-54-dependent transcriptional regulator HTH Fis-type family
4103	 64.85	0	4546995..4547435	+	146	146341278	-	BRADO4356	-	hypothetical protein
4104	 64.37	0	4547493..4548146	-	217	146341279	-	BRADO4357	-	hypothetical protein
4105	 63.69	0	4548505..4548672	+	55	146341280	-	BRADO4359	-	hypothetical protein
4106	 66.77	0	4548737..4549678	-	313	146341281	ssuA	BRADO4360	-	putative alkanesulfonate ABC transporter, substrate binding protein
4107	 67.30	0	4549675..4550778	-	367	146341282	ssuD	BRADO4361	-	putative sulfonate monooxygenase (SsuD/MsuD-like)
4108	 67.68	0	4550800..4551984	-	394	146341283	-	BRADO4362	-	putative acyl-CoA dehydrogenase
4109	 66.79	0	4551978..4552769	-	263	146341284	ssuB	BRADO4363	-	alkanesulfonate ABC transporter, ATP binding protein
4110	 67.26	0	4552763..4553776	-	337	146341285	-	BRADO4364	-	putative alkanesulfonate ABC transporter, permease protein
4111	 64.93	0	4553754..4554845	-	363	146341286	-	BRADO4365	-	putative alkanesulfonate ABC transporter, substrate binding protein
4112	 67.09	0	4555118..4555351	-	77	146341287	-	BRADO4367	-	hypothetical protein
4113	 58.76	-2	4556266..4556556	+	96	146341288	-	BRADO4369	-	hypothetical protein
4114	 62.03	-1	4556602..4557528	+	308	146341289	-	BRADO4370	-	hypothetical protein
4115	 65.26	0	4557890..4559599	+	569	146341290	-	BRADO4371	-	hypothetical protein
4116	 64.39	0	4559612..4560535	-	307	146341291	-	BRADO4372	-	putative glutathione synthase
4117	 67.86	0	4560532..4561284	-	250	146341292	-	BRADO4373	-	hypothetical protein
65.78	MEAN

3.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.