IslandPathversion 1.0

IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.78 STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3991	 65.80	0	4441541..4442467	+	308	146341166	-	BRADO4238	-	hypothetical protein
3992	 59.09	-2	4443585..4443782	+	65	146341167	-	BRADO4240	-	hypothetical protein
3993	 70.21	+1	4443860..4444339	+	159	146341168	-	BRADO4241	-	putative GcrA-like regulator
3994	 66.12	0	4444604..4445521	-	305	146341169	-	BRADO4242	-	putative short-chain dehydrogenase
3995	 66.03	0	4445806..4445961	+	51	146341170	-	BRADO4243	-	hypothetical protein
3996	 62.88	0	4446379..4447488	+	369	146341171	-	BRADO4244	-	ABC transporter substrate-binding protein
3997	 66.49	0	4447485..4448594	+	369	146341172	-	BRADO4245	-	putative ABC transporter (permease protein)
3998	 68.50	0	4448598..4449524	+	308	146341173	-	BRADO4246	-	ABC transporter permease
3999	 65.35	0	4449754..4450437	+	227	146341174	-	BRADO4247	-	putative isochorismatase family protein
4000	 68.10	0	4450434..4451963	+	509	146341175	-	BRADO4248	-	putative ABC transporter ATP-binding protein
4001	 63.07	0	4452536..4454092	+	518	146341176	-	BRADO4249	-	hypothetical protein
4002	 63.46	0	4454207..4455766	+	519	146341177	-	BRADO4250	-	putative myosin-cross-reactive antigen
4003	 67.10	0	4455785..4457416	-	543	146341178	-	BRADO4251	-	hypothetical protein
4004	 64.30	0	4457577..4457999	-	140	146341179	-	BRADO4252	-	hypothetical protein
4005	 59.33	-1	4458046..4458195	-	49	146341180	-	BRADO4253	-	hypothetical protein
4006	 57.41	-2	4458202..4458309	-	35	146341181	-	BRADO4254	-	hypothetical protein
4007	 64.25	0	4458520..4459428	-	302	146341182	-	BRADO4255	-	transcriptional regulator
4008	 70.71	+1	4459552..4460442	-	296	146341183	-	BRADO4256	-	putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase
4009	 58.45	-2	4460666..4460872	-	68	146341184	-	BRADO4257	-	hypothetical protein
4010	 62.08	-1	4461197..4461937	+	246	146341185	-	BRADO4258	-	hypothetical protein
4011	 63.36	0	4461966..4462871	-	301	146341186	-	BRADO4259	-	hypothetical protein
4012	 68.16	0	4462855..4463856	-	333	146341187	-	BRADO4260	-	hypothetical protein
4013	 65.83	0	4463910..4465223	-	437	146341188	-	BRADO4261	-	hypothetical protein
4014	 64.89	0	4465220..4466176	-	318	146341189	-	BRADO4262	-	hypothetical protein
4015	 65.45	0	4466145..4467380	-	411	146341190	-	BRADO4263	-	putative membrane (permease) protein
4016	 69.36	+1	4467377..4467970	-	197	146341191	-	BRADO4264	-	hypothetical protein
4017	 70.37	+1	4469234..4469341	+	35	146341192	-	BRADO4266	-	hypothetical protein
4018	 61.65	-1	4469419..4470216	-	265	146341193	-	BRADO4267	-	transposase
4019	 59.70	-1	4470273..4470674	-	133	146341194	-	BRADO4268	-	putative transposase
4020	 66.06	0	4470906..4472060	-	384	146341195	ssuD	BRADO4269	-	putative alkanesulfonate monooxygenase (FMNH2-dependent aliphatic sulfonate monooxygenase)
4021	 69.00	0	4472295..4473152	+	285	146341196	ssuC	BRADO4270	-	putative sulfonate ABC transporter, permease protein
4022	 72.78	+2	4473149..4473868	+	239	146341197	ssuB	BRADO4271	-	putative sulfonate ABC transporter, ATP-binding protein
4023	 64.80	0	4473887..4474903	+	338	146341198	ssuA	BRADO4272	-	putative sulfonate ABC transporter, periplasmic-binding protein
4024	 66.67	0	4474941..4476170	+	409	146341199	-	BRADO4273	-	putative acyl-CoA dehydrogenase
4025	 67.55	0	4476206..4476772	+	188	146341200	-	BRADO4274	-	putative monooxygenase/flavin reductase-like, FMN-binding
4026	 66.67	0	4476797..4477756	+	319	146341201	srpH	BRADO4275	-	serine acetyltransferase (cysE-like)
4027	 62.46	-1	4477813..4478145	-	110	146341202	-	BRADO4276	-	hypothetical protein
4028	 66.96	0	4478234..4479577	+	447	146341203	ntaA	BRADO4277	-	nitrilotriacetate monooxygenase component A (NTA monooxygenase component A) (NTA-MO A)
4029	 61.96	-1	4479665..4480492	+	275	146341204	-	BRADO4278	-	putative D-methionine ABC transporter, perisplasmic binding lipoprotein (metQ-like)
4030	 69.36	+1	4480544..4481398	-	284	146341205	-	BRADO4279	-	putative nitroreductase family protein; putative oxygen-insensitive NADPH nitroreductase (NfsA-like)
4031	 66.76	0	4481538..4482596	-	352	146341206	-	BRADO4280	-	putative luciferase-like monooxygenase
4032	 68.69	0	4482657..4482755	-	32	146341207	-	BRADO4281	-	hypothetical protein
4033	 66.67	0	4482752..4483126	-	124	146341208	-	BRADO4282	-	putative ferrodoxin homolog (AsfB-like)
4034	 70.61	+1	4483123..4484718	-	531	146341209	-	BRADO4283	-	putative oxidoreductase (AsfA-like), putative L-aspartate oxidase
4035	 67.89	0	4485126..4486592	+	488	146341210	-	BRADO4284	-	hypothetical protein
4036	 62.81	0	4486574..4487350	-	258	146341211	metQ	BRADO4285	-	D-methionine ABC transporter protein, periplasmic binding protein
4037	 64.24	0	4487609..4488391	-	260	146341212	-	BRADO4286	-	hypothetical protein
4038	 69.22	+1	4488443..4489108	-	221	146341213	metI	BRADO4287	-	D-and L-methionine ABC transporter, permease protein
4039	 66.95	0	4489098..4490165	-	355	146341214	metN	BRADO4288	-	D-and L-methionine ABC transporter, ATP binding protein
4040	 66.31	0	4490375..4491220	-	281	146341215	-	BRADO4289	-	hypothetical protein
4041	 62.75	0	4491217..4491420	-	67	146341216	-	BRADO4290	-	hypothetical protein
4042	 68.09	0	4491605..4491886	+	93	146341217	-	BRADO4291	-	hypothetical protein
4043	 65.07	0	4491925..4492863	-	312	146341218	-	BRADO4292	-	putative alpha-ketoglutarate-dependent taurine dioxygenase (TauD-like) (2-aminoethanesulfonate dioxygenase) (Sulfate starvation-induced protein 3) (SSI3)
4044	 64.25	0	4492894..4493100	-	68	146341219	-	BRADO4293	-	hypothetical protein
4045	 63.10	0	4493704..4494096	+	130	146341220	-	BRADO4296	-	putative insertion element (IS) transposase
4046	 60.19	-1	4494631..4495818	+	395	146341221	-	BRADO4297	-	acyltransferase family 3 protein
4047	 59.01	-2	4495944..4496165	+	73	146341222	-	BRADO4298	-	hypothetical protein
4048	 60.85	-1	4496239..4496616	+	125	146341223	-	BRADO4299	-	hypothetical protein
4049	 54.64	-2	4496869..4497051	+	60	146341224	-	BRADO4300	-	hypothetical protein
4050	 62.32	-1	4497192..4497398	+	68	146341225	-	BRADO4301	-	hypothetical protein
4051	 60.18	-1	4497455..4497901	-	148	146341226	-	BRADO4302	-	hypothetical protein
4052	 60.87	-1	4497951..4498364	-	137	146341227	-	BRADO4303	-	hypothetical protein
4053	 63.94	0	4498525..4499001	-	158	146341228	-	BRADO4304	-	hypothetical protein
4054	 64.57	0	4499119..4499835	-	238	146341229	-	BRADO4305	-	hypothetical protein
4055	 67.45	0	4500040..4500423	+	127	146341230	-	BRADO4306	-	putative glyoxalase
4056	 64.72	0	4500436..4500897	-	153	146341231	-	BRADO4307	-	hypothetical protein
4057	 66.11	0	4501036..4503717	-	893	146341232	-	BRADO4308	-	sensor histidine kinase
4058	 67.04	0	4503830..4504633	-	267	146341233	-	BRADO4309	-	putative NUDIX hydrolase
4059	 68.45	0	4504636..4505589	-	317	146341234	-	BRADO4310	-	putative dihydrodipicolinate synthetase
4060	 66.21	0	4505747..4506625	-	292	146341235	-	BRADO4311	-	putative short-chain dehydrogenase/reductase (SDR)
4061	 67.13	0	4506828..4507688	-	286	146341236	-	BRADO4312	-	putative dehydratase (MaoC-like)
4062	 61.28	-1	4507939..4508328	-	129	146341237	-	BRADO4313	-	hypothetical protein
4063	 65.62	0	4508328..4509476	-	382	146341238	-	BRADO4314	-	acetyl-CoA acetyltransferase
4064	 68.60	0	4509985..4510242	-	85	146341239	-	BRADO4315	-	hypothetical protein
4065	 56.90	-2	4510448..4510918	-	156	146341240	-	BRADO4316	-	hypothetical protein
4066	 66.21	0	4511155..4514646	-	1163	146341241	-	BRADO4317	-	indolepyruvate ferredoxin oxidoreductase
4067	 54.63	-2	4514722..4514937	-	71	146341242	-	BRADO4318	-	hypothetical protein
4068	 66.20	0	4514953..4515597	-	214	146341243	-	BRADO4319	-	hypothetical protein
4069	 68.02	0	4515734..4516177	+	147	146341244	-	BRADO4320	-	hypothetical protein
4070	 67.63	0	4516436..4516747	+	103	146341245	-	BRADO4321	-	hypothetical protein
4071	 66.18	0	4516818..4517633	-	271	146341246	-	BRADO4322	-	putative methylisocitrate lyase or carboxyvinyl-carboxyphosphonate phosphorylmutase
4072	 61.27	-1	4517679..4517993	-	104	146341247	-	BRADO4323	-	hypothetical protein
4073	 70.37	+1	4518069..4518770	+	233	146341248	-	BRADO4324	-	Ars family transcriptional regulator
4074	 63.68	0	4518881..4519885	+	334	146341249	-	BRADO4325	-	putative alpha/beta hydrolase; putative prolyl aminopeptidase
4075	 68.29	0	4519945..4520190	-	81	146341250	-	BRADO4326	-	hypothetical protein
4076	 65.79	0	4520267..4520608	-	113	146341251	-	BRADO4327	-	hypothetical protein
4077	 64.76	0	4520736..4521050	-	104	146341252	-	BRADO4328	-	hypothetical protein
4078	 69.61	+1	4521086..4521799	-	237	146341253	-	BRADO4329	-	hypothetical protein
4079	 68.22	0	4521972..4522292	-	106	146341254	-	BRADO4330	-	hypothetical protein
4080	 64.71	0	4522810..4524342	-	510	146341255	-	BRADO4331	-	putative propionyl-CoA carboxylase beta chain
4081	 72.37	+1	4524568..4525251	+	227	146341256	-	BRADO4332	-	hypothetical protein
4082	 59.41	-1	4525701..4526003	+	100	146341257	-	BRADO4333	-	hypothetical protein
4083	 66.78	0	4526244..4527164	-	306	146341258	-	BRADO4334	-	putative RNA polymerase sigma subunit
4084	 67.46	0	4527161..4527919	-	252	146341259	-	BRADO4335	-	putative dehydrogenase/oxidoreductase
4085	 67.83	0	4528061..4529266	+	401	146341260	-	BRADO4336	-	putative peptidase
4086	 64.69	0	4529551..4530006	-	151	146341261	-	BRADO4337	-	putative ABC-type ribose transport system, auxiliary component
4087	 68.68	0	4530022..4530369	-	115	146341262	-	BRADO4338	-	hypothetical protein
4088	 67.38	0	4530614..4531036	+	140	146341263	-	BRADO4339	-	putative ribonucleotide reductase
4089	 65.46	0	4531047..4531544	+	165	146341264	-	BRADO4340	-	putative cytidine/deoxycytidylate deaminase
4090	 64.71	0	4531640..4532047	+	135	146341265	-	BRADO4341	-	hypothetical protein
65.78	MEAN

3.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.