IslandPathversion 1.0

IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.78 STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3328	 62.63	0	3738051..3738422	+	123	146340503	-	BRADO3545	-	hypothetical protein
3329	 64.10	0	3738484..3738873	+	129	146340504	-	BRADO3546	-	Iron-sulfur cluster assembly protein
3330	 65.36	0	3738994..3739530	+	178	146340505	-	BRADO3547	-	hypothetical protein
3331	 64.61	0	3739565..3740632	-	355	146340506	-	BRADO3548	-	hypothetical protein
3332	 67.02	0	3740993..3742423	-	476	146340507	-	BRADO3549	-	putative ATP-dependent RNA helicase
3333	 63.61	0	3742742..3743329	+	195	146340508	-	BRADO3550	-	hypothetical protein
3334	 66.27	0	3743419..3744918	+	499	146340509	-	BRADO3551	-	hypothetical protein
3335	 66.80	0	3744928..3745695	-	255	146340510	-	BRADO3552	-	putative 2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase)
3336	 64.52	0	3745726..3745911	-	61	146340511	-	BRADO3553	-	hypothetical protein
3337	 65.00	0	3746134..3746913	-	259	146340512	-	BRADO3554	-	putative outer-membrane immunogenic protein precursor; putative exported protein
3338	 67.05	0	3747154..3749229	-	691	146340513	parE	BRADO3555	-	DNA topoisomerase IV subunit B
3339	 68.17	0	3749501..3750031	+	176	146340514	-	BRADO3556	-	hypothetical protein
3340	 68.97	0	3750265..3750915	+	216	146340515	-	BRADO3557	-	hypothetical protein
3341	 66.26	0	3750927..3751916	+	329	146340516	argC	BRADO3558	-	N-acetyl-gamma-glutamyl-phosphate reductase
3342	 66.02	0	3751981..3753219	+	412	146340517	-	BRADO3559	-	threonine dehydratase
3343	 62.32	-1	3753258..3754385	+	375	146340518	-	BRADO3560	-	putative RNA ligase
3344	 63.97	0	3754639..3755898	+	419	146340519	-	BRADO3561	-	putative ABC sugar transporter (substrate binding protein); putative exported protein
3345	 64.54	0	3755900..3756841	+	313	146340520	-	BRADO3562	-	putative ABC transporter (permease protein); putative membrane protein
3346	 61.72	-1	3756834..3757682	+	282	146340521	-	BRADO3563	-	putative sugar ABC transporter (permease protein); putative exported protein
3347	 66.12	0	3757705..3758802	+	365	146340522	-	BRADO3564	-	putative dehydrogenase/oxidoreductase
3348	 62.79	0	3758813..3759457	+	214	146340523	-	BRADO3565	-	hypothetical protein
3349	 70.48	+1	3759454..3760503	+	349	146340524	-	BRADO3566	-	LacI family transcriptional regulator
3350	 64.66	0	3760507..3760905	-	132	146340525	-	BRADO3567	-	hypothetical protein
3351	 62.13	-1	3760978..3762783	-	601	146340526	phbC	BRADO3568	-	Poly-beta-hydroxybutyrate polymerase
3352	 67.72	0	3763134..3763322	+	62	146340527	-	BRADO3570	-	hypothetical protein
3353	 65.68	0	3763541..3764761	+	406	146340528	-	BRADO3571	-	aminotransferase
3354	 67.50	0	3764798..3766114	+	438	146340529	hom	BRADO3572	-	homoserine dehydrogenase
3355	 68.26	0	3766319..3767320	+	333	146340530	glpX	BRADO3573	-	fructose 1,6-bisphosphatase II
3356	 64.58	0	3767336..3768055	+	239	146340531	-	BRADO3574	-	putative (S)-2-haloacid dehalogenase IVA (2-haloalkanoic acid dehalogenase IVA) (L-2-haloacid dehalogenase IVA) (halocarboxylic acid halidohydrolase IVA)
3357	 58.43	-2	3768065..3768331	+	88	146340532	-	BRADO3575	-	hypothetical protein
3358	 67.03	0	3768328..3769419	-	363	146340533	-	BRADO3576	-	putative methyl-accepting chemotaxis protein
3359	 69.60	+1	3769716..3771557	+	613	146340534	-	BRADO3577	-	putative single-stranded-DNA-specific exonuclease recJ
3360	 66.92	0	3772305..3772703	-	132	146340535	-	BRADO3578	-	hypothetical protein
3361	 66.67	0	3772934..3773725	+	263	146340536	-	BRADO3579	-	hypothetical protein
3362	 69.53	+1	3773829..3775049	-	406	146340537	-	BRADO3580	-	putative membrane-bound lytic transglycosylase precursor protein, putative signal peptide
3363	 73.26	+2	3775101..3775631	-	176	146340538	-	BRADO3581	-	MarR family transcriptional regulator
3364	 66.24	0	3775680..3776150	+	156	146340539	-	BRADO3582	-	putative carboxymuconolactone decarboxylase (CMD) family protein
3365	 67.76	0	3776210..3776392	+	60	146340540	-	BRADO3583	-	hypothetical protein
3366	 68.56	0	3776620..3776883	-	87	146340541	-	BRADO3584	-	hypothetical protein
3367	 68.56	0	3776956..3778596	-	546	146340542	-	BRADO3585	-	putative peptidase M23 family protein; putative signal peptide
3368	 62.08	-1	3778648..3779214	-	188	146340543	efp	BRADO3586	-	elongation factor P
3369	 69.22	+1	3779338..3780393	+	351	146340544	-	BRADO3587	-	putative lysyl-tRNA synthetase (lysine--tRNA ligase)
3370	 68.58	0	3780390..3781484	+	364	146340545	-	BRADO3588	-	putative lysine 2,3-aminomutase
3371	 65.23	0	3781521..3781799	+	92	146340546	-	BRADO3589	-	putative signal peptide
3372	 66.76	0	3781852..3782937	-	361	146340547	aroG	BRADO3590	-	phospho-2-dehydro-3-deoxyheptonate aldolase
3373	 66.84	0	3783168..3783755	-	195	146340548	-	BRADO3591	-	hypothetical protein
3374	 67.35	0	3783881..3784909	-	342	146340549	-	BRADO3592	-	hypothetical protein
3375	 65.94	0	3785771..3787003	+	410	146340550	hemA	BRADO3594	-	5-aminolevulinate synthase
3376	 64.59	0	3787142..3787720	+	192	146340551	-	BRADO3595	-	hypothetical protein
3377	 66.20	0	3787823..3788035	+	70	146340552	-	BRADO3596	-	hypothetical protein
3378	 66.00	0	3788336..3789088	-	250	146340553	-	BRADO3597	-	hypothetical protein
3379	 65.47	0	3789295..3789627	+	110	146340554	-	BRADO3598	-	hypothetical protein
3380	 53.78	-2	3790131..3791108	+	325	146340555	-	BRADO3599	-	hypothetical protein
3381	 66.76	0	3791179..3792255	-	358	146340556	-	BRADO3600	-	putative phage integrase
3382	 70.33	+1	3792252..3792524	-	90	146340557	-	BRADO3601	-	hypothetical protein
3383	 69.51	+1	3792521..3792766	-	81	146340558	-	BRADO3602	-	hypothetical protein
3384	 69.52	+1	3792859..3793068	-	69	146340559	-	BRADO3603	-	hypothetical protein
3385	 70.69	+1	3793071..3793244	-	57	146340560	-	BRADO3604	-	hypothetical protein
3386	 72.67	+2	3793369..3793518	-	49	146340561	-	BRADO3605	-	hypothetical protein
3387	 63.03	0	3793800..3794459	-	219	146340562	-	BRADO3606	-	hypothetical protein
3388	 65.10	0	3794556..3794810	+	84	146340563	-	BRADO3607	-	hypothetical protein
3389	 63.60	0	3794963..3795190	+	75	146340564	-	BRADO3608	-	hypothetical protein
3390	 71.88	+1	3795187..3795474	+	95	146340565	-	BRADO3609	-	hypothetical protein
3391	 63.53	0	3795471..3795725	+	84	146340566	-	BRADO3610	-	hypothetical protein
3392	 64.97	0	3795722..3796192	+	156	146340567	-	BRADO3611	-	hypothetical protein
3393	 66.46	0	3796205..3796693	+	162	146340568	-	BRADO3612	-	hypothetical protein
3394	 67.38	0	3796693..3798525	+	610	146340569	-	BRADO3613	-	hypothetical protein
3395	 64.06	0	3798522..3798713	+	63	146340570	-	BRADO3614	-	hypothetical protein
3396	 65.19	0	3798706..3799110	+	134	146340571	-	BRADO3615	-	hypothetical protein
3397	 66.00	0	3799107..3799406	+	99	146340572	-	BRADO3616	-	hypothetical protein
3398	 66.67	0	3799627..3799911	+	94	146340573	-	BRADO3618	-	hypothetical protein
3399	 72.03	+1	3799908..3800168	+	86	146340574	-	BRADO3619	-	hypothetical protein
3400	 66.59	0	3800229..3801491	+	420	146340575	-	BRADO3620	-	hypothetical protein
3401	 61.06	-1	3801488..3802093	+	201	146340576	-	BRADO3621	-	putative transcription antitermination protein NusG
3402	 55.87	-2	3802249..3802785	-	178	146340577	-	BRADO3622	-	hypothetical protein
3403	 59.72	-1	3803177..3803464	+	95	146340578	-	BRADO3623	-	hypothetical protein
3404	 60.12	-1	3803555..3804043	+	162	146340579	-	BRADO3624	-	hypothetical protein
3405	 50.95	-2	3804073..3805173	-	366	146340580	-	BRADO3625	-	hypothetical protein
3406	 65.29	0	3805283..3807022	+	579	146340581	-	BRADO3626	-	hypothetical protein
3407	 65.31	0	3807022..3808347	+	441	146340582	-	BRADO3627	-	hypothetical protein
3408	 65.98	0	3808344..3809213	+	289	146340583	-	BRADO3628	-	hypothetical protein
3409	 66.44	0	3810241..3811551	+	436	146340584	-	BRADO3629	-	hypothetical protein
3410	 65.34	0	3811621..3812073	+	150	146340585	-	BRADO3630	-	hypothetical protein
3411	 63.73	0	3812089..3813414	+	441	146340586	-	BRADO3631	-	hypothetical protein
3412	 66.20	0	3813427..3813642	+	71	146340587	-	BRADO3632	-	hypothetical protein
3413	 66.99	0	3813645..3814259	+	204	146340588	-	BRADO3633	-	hypothetical protein
3414	 69.29	+1	3814265..3814645	+	126	146340589	-	BRADO3634	-	hypothetical protein
3415	 69.31	+1	3814649..3814951	+	100	146340590	-	BRADO3635	-	hypothetical protein
3416	 66.67	0	3814953..3815423	+	156	146340591	-	BRADO3636	-	hypothetical protein
3417	 67.34	0	3815435..3815881	+	148	146340592	-	BRADO3637	-	hypothetical protein
3418	 65.37	0	3815910..3817142	+	410	146340593	-	BRADO3638	-	hypothetical protein
3419	 67.79	0	3817152..3817598	+	148	146340594	-	BRADO3639	-	hypothetical protein
3420	 66.30	0	3817661..3817933	+	90	146340595	-	BRADO3640	-	hypothetical protein
3421	 67.42	0	3817935..3820058	+	707	146340596	-	BRADO3641	-	hypothetical protein
3422	 65.06	0	3820073..3820321	+	82	146340597	-	BRADO3642	-	hypothetical protein
3423	 69.17	+1	3820323..3820682	+	119	146340598	-	BRADO3643	-	hypothetical protein
3424	 61.11	-1	3820679..3821182	+	167	146340599	-	BRADO3644	-	hypothetical protein
3425	 65.93	0	3821198..3821602	+	134	146340600	-	BRADO3645	-	tail assembly protein homolog
3426	 66.11	0	3821599..3825399	+	1266	146340601	-	BRADO3646	-	tail fiber protein
3427	 55.17	-2	3825414..3825500	-	28	146340602	-	BRADO3647	-	hypothetical protein
65.78	MEAN

3.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.