IslandPathversion 1.0

IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.78 STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3157	 66.10	0	3551062..3552834	+	590	146340332	aspS	BRADO3359	-	aspartyl-tRNA synthetase
3158	 71.85	+1	3553138..3553851	+	237	146340333	-	BRADO3360	-	putative RlpA family protein
3159	 65.72	0	3553866..3554501	-	211	146340334	-	BRADO3361	-	putative fatty acid hydroxylase family protein
3160	 63.17	0	3554864..3555520	-	218	146340335	-	BRADO3362	-	hypothetical protein
3161	 62.68	0	3555538..3556089	-	183	146340336	-	BRADO3363	-	hypothetical protein
3162	 63.62	0	3556099..3557511	-	470	146340337	-	BRADO3364	-	hypothetical protein
3163	 58.78	-2	3557819..3558490	-	223	146340338	-	BRADO3365	-	hypothetical protein
3164	 67.99	0	3559166..3561211	-	681	146340339	-	BRADO3366	-	hypothetical protein
3165	 66.97	0	3561435..3563747	+	770	146340340	-	BRADO3367	-	malic enzyme
3166	 62.06	-1	3563895..3564350	+	151	146340341	-	BRADO3368	-	hypothetical protein
3167	 67.02	0	3564360..3564920	-	186	146340342	-	BRADO3369	-	putative dihydrofolate reductase
3168	 64.70	0	3564940..3565905	-	321	146340343	-	BRADO3370	-	putative polysaccharide deacetylase; putative chitin deacetylase
3169	 65.12	0	3566081..3566662	-	193	146340344	-	BRADO3371	-	putative glutathione peroxidase
3170	 66.22	0	3566816..3568588	-	590	146340345	-	BRADO3372	-	putative ErfK/YbiS/YcfS/YnhG family protein; putative signal peptide
3171	 60.14	-1	3568816..3569367	+	183	146340346	-	BRADO3373	-	hypothetical protein
3172	 63.89	0	3569357..3569608	-	83	146340347	-	BRADO3374	-	hypothetical protein
3173	 72.14	+1	3569707..3570474	-	255	146340348	-	BRADO3375	-	hypothetical protein
3174	 69.34	+1	3570513..3572309	-	598	146340349	-	BRADO3376	-	toxin/protease ABC transporter ATP-binding protein
3175	 68.01	0	3572391..3574097	+	568	146340350	-	BRADO3377	-	hypothetical protein
3176	 66.30	0	3574106..3575455	-	449	146340351	-	BRADO3378	-	putative secretion HlyD family protein, putative RTX secretion protein D
3177	 70.21	+1	3575596..3577794	-	732	146340352	-	BRADO3379	-	PE-PGRS family protein (fragment)
3178	 66.30	0	3577931..3578200	-	89	146340353	-	BRADO3381	-	hypothetical protein
3179	 56.00	-2	3578277..3578426	-	49	146340354	-	BRADO3382	-	hypothetical protein
3180	 63.86	0	3578602..3579882	+	426	146340355	-	BRADO3383	-	acetylornithine deacetylase
3181	 65.25	0	3579907..3580401	+	164	146340356	-	BRADO3384	-	putative phenylacetic acid degradation-like protein
3182	 64.23	0	3580529..3581185	+	218	146340357	-	BRADO3385	-	GNAT family acetyltransferase
3183	 66.34	0	3581284..3581586	-	100	146340358	-	BRADO3386	-	hypothetical protein
3184	 66.67	0	3581664..3582362	-	232	146340359	-	BRADO3387	-	hypothetical protein
3185	 65.35	0	3582454..3583134	-	226	146340360	fabG	BRADO3388	-	3-ketoacyl-(acyl-carrier-protein) reductase
3186	 62.82	0	3583266..3583967	+	233	146340361	-	BRADO3389	-	hypothetical protein
3187	 62.10	-1	3584052..3584270	+	72	146340362	-	BRADO3390	-	hypothetical protein
3188	 64.94	0	3584351..3584812	-	153	146340363	-	BRADO3391	-	hypothetical protein
3189	 63.64	0	3584846..3585043	+	65	146340364	-	BRADO3392	-	hypothetical protein
3190	 61.90	-1	3585131..3585508	+	125	146340365	-	BRADO3393	-	hypothetical protein
3191	 66.67	0	3585607..3585798	-	63	146340366	-	BRADO3394	-	putative glutamine synthetase translation inhibitor GstI-like.
3192	 62.66	0	3586303..3587376	+	357	146340367	glnII	BRADO3395	-	glutamine synthetase II (glutamate--ammonia ligase II) (GSII)
3193	 65.58	0	3587581..3588039	+	152	146340368	-	BRADO3396	-	putative signal peptide
3194	 65.80	0	3588142..3589764	+	540	146340369	-	BRADO3397	-	ABC transporter ATP-binding protein
3195	 67.67	0	3589786..3590679	-	297	146340370	-	BRADO3398	-	putative dienelactone hydrolase family protein, putative signal peptide
3196	 67.72	0	3590690..3592786	-	698	146340371	-	BRADO3399	-	sensor histidine kinase
3197	 65.04	0	3592976..3593221	-	81	146340372	-	BRADO3400	-	putative signal peptide
3198	 63.22	0	3593385..3593819	-	144	146340373	-	BRADO3401	-	hypothetical protein
3199	 66.57	0	3594045..3595085	+	346	146340374	-	BRADO3402	-	putative signal peptide
3200	 60.85	-1	3595152..3595409	+	85	146340375	-	BRADO3403	-	hypothetical protein
3201	 62.98	0	3596781..3597893	+	370	146340376	-	BRADO3405	-	putative alkanesulfonate monooxygenase (FMNH2-dependent aliphatic sulfonate monooxygenase)
3202	 67.98	0	3597904..3598818	+	304	146340377	-	BRADO3406	-	putative branched-chain amino acid ABC transporter, ATP-binding protein
3203	 67.00	0	3598818..3599708	+	296	146340378	-	BRADO3407	-	putative branched-chain amino acid ABC transporter, permease protein
3204	 67.42	0	3599708..3600763	+	351	146340379	-	BRADO3408	-	putative branched-chain amino acid ABC transporter, permease protein
3205	 63.77	0	3600793..3602139	+	448	146340380	-	BRADO3409	-	branched-chain amino acid ABC transporter substrate-binding protein
3206	 71.04	+1	3602356..3603132	+	258	146340381	-	BRADO3410	-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein
3207	 65.37	0	3604385..3604846	-	153	146340382	-	BRADO3414	-	hypothetical protein
3208	 68.46	0	3605164..3605442	+	92	146340383	-	BRADO3416	-	hypothetical protein
3209	 68.19	0	3605582..3606172	+	196	146340384	-	BRADO3417	-	putative NADPH-dependent FMN reductase
3210	 70.24	+1	3606226..3606477	-	83	146340385	-	BRADO3418	-	hypothetical protein
3211	 71.06	+1	3606866..3607753	+	295	146340386	-	BRADO3419	-	LysR family transcriptional regulator
3212	 67.13	0	3607870..3609171	+	433	146340387	gabT	BRADO3420	-	4-aminobutyrate aminotransferase ((S)-3-amino-2-methylpropionate transaminase)
3213	 65.97	0	3609204..3610502	+	432	146340388	-	BRADO3421	-	acetylornithine deacetylase
3214	 68.14	0	3610499..3611449	+	316	146340389	-	BRADO3422	-	putative 2-hydroxyacid dehydrogenase family protein.
3215	 72.43	+2	3611465..3611863	-	132	146340390	-	BRADO3423	-	hypothetical protein
3216	 66.05	0	3611974..3612135	-	53	146340391	-	BRADO3424	-	hypothetical protein
3217	 61.97	-1	3612150..3612383	-	77	146340392	-	BRADO3425	-	hypothetical protein
3218	 62.30	-1	3612605..3612787	+	60	146340393	-	BRADO3426	-	hypothetical protein
3219	 69.38	+1	3613007..3613891	+	294	146340394	-	BRADO3427	-	hypothetical protein
3220	 71.89	+1	3613881..3614282	+	133	146340395	-	BRADO3428	-	putative cytochrome c region
3221	 60.93	-1	3614622..3615458	+	278	146340396	-	BRADO3429	-	hypothetical protein
3222	 68.00	0	3615455..3616129	-	224	146340397	-	BRADO3430	-	putative haloacid dehalogenase-like hydrolase family protein
3223	 62.53	0	3616314..3616700	-	128	146340398	-	BRADO3431	-	hypothetical protein
3224	 67.63	0	3616810..3617016	-	68	146340399	-	BRADO3432	-	hypothetical protein
3225	 71.09	+1	3617151..3618077	-	308	146340400	-	BRADO3433	-	hypothetical protein
3226	 67.33	0	3618589..3620697	-	702	146340401	-	BRADO3434	-	histidine kinase
3227	 63.96	0	3620725..3621462	-	245	146340402	-	BRADO3435	-	CRP/FNR family transcriptional regulator
3228	 67.39	0	3621761..3623836	+	691	146340403	-	BRADO3436	-	putative methyl-accepting chemotaxis receptor/sensory transducer protein
3229	 61.05	-1	3623931..3624464	-	177	146340404	-	BRADO3437	-	hypothetical protein
3230	 64.66	0	3624490..3625287	-	265	146340405	-	BRADO3438	-	hypothetical protein
3231	 65.24	0	3625399..3625608	-	69	146340406	-	BRADO3439	-	hypothetical protein
3232	 65.47	0	3625967..3627307	-	446	146340407	-	BRADO3440	-	putative glucose/sorbosone dehydrogenase; putative peptide signal
3233	 64.30	0	3627304..3627768	-	154	146340408	-	BRADO3441	-	hypothetical protein
3234	 66.12	0	3627970..3628521	+	183	146340409	-	BRADO3442	-	hypothetical protein
3235	 70.20	+1	3628547..3628999	-	150	146340410	-	BRADO3443	-	hypothetical protein
3236	 62.79	0	3629294..3630145	+	283	146340411	hbdA	BRADO3444	-	3-hydroxybutyryl-CoA dehydrogenase
3237	 62.00	-1	3630919..3631218	+	99	146340412	-	BRADO3448	-	putative signal peptide
3238	 68.45	0	3631222..3632061	+	279	146340413	-	BRADO3449	-	putative signal peptide
3239	 68.56	0	3632362..3633099	+	245	146340414	-	BRADO3450	-	hypothetical protein
3240	 66.40	0	3633215..3633958	+	247	146340415	-	BRADO3451	-	putative signal peptide
3241	 62.53	0	3634129..3634563	+	144	146340416	-	BRADO3452	-	hypothetical protein
3242	 64.94	0	3634592..3634822	-	76	146340417	-	BRADO3453	-	hypothetical protein
3243	 57.87	-2	3635043..3635258	-	71	146340418	-	BRADO3454	-	hypothetical protein
3244	 66.15	0	3635724..3636695	+	323	146340419	-	BRADO3455	-	putative glyoxalase/Bleomycin resistance protein/dihydroxybiphenyl dioxygenase superfamily protein
3245	 63.02	0	3636735..3636926	-	63	146340420	-	BRADO3456	-	hypothetical protein
3246	 61.78	-1	3636990..3637337	-	115	146340421	-	BRADO3457	-	putative Zn-ribbon-containing protein involved in phosphonate metabolism, PhnA-like protein.
3247	 61.75	-1	3637485..3637769	-	94	146340422	-	BRADO3458	-	hypothetical protein
3248	 70.06	+1	3637979..3639688	+	569	146340423	-	BRADO3459	-	putative acyl-CoA dehydrogenase.
3249	 69.37	+1	3639729..3640505	-	258	146340424	-	BRADO3460	-	putative signal peptide
3250	 70.77	+1	3640671..3642740	+	689	146340425	-	BRADO3461	-	putative methyl-accepting chemotaxis receptor/sensory transducer protein.
3251	 64.10	0	3643651..3643884	+	77	146340426	-	BRADO3464	-	hypothetical protein
3252	 66.97	0	3644457..3645782	-	441	146340427	-	BRADO3465	-	putative signal peptide
3253	 71.75	+1	3646113..3647273	-	386	146340428	-	BRADO3466	-	putative cytochrome P450
3254	 62.60	0	3647756..3648001	-	81	146340429	-	BRADO3468	-	hypothetical protein
3255	 73.25	+2	3648085..3648570	+	161	146340430	-	BRADO3469	-	hypothetical protein
3256	 66.40	0	3648599..3648967	-	122	146340431	-	BRADO3470	-	hypothetical protein
65.78	MEAN

3.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.