IslandPathversion 1.0

IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.78 STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2932	 65.08	0	3317328..3317642	+	104	146340107	-	BRADO3121	-	putative signal peptide
2933	 66.07	0	3317865..3318875	+	336	146340108	-	BRADO3122	-	hypothetical protein
2934	 63.85	0	3319631..3320056	-	141	146340109	-	BRADO3123	-	putative glutathione-dependent formaldehyde-activating, GFA
2935	 67.25	0	3320516..3321721	+	401	146340110	-	BRADO3125	-	putative Formyl-CoA transferase
2936	 64.52	0	3321726..3322892	+	388	146340111	-	BRADO3126	-	putative acyl-CoA dehydrogenase
2937	 67.72	0	3323460..3324596	+	378	146340112	-	BRADO3127	-	putative thiolase
2938	 65.27	0	3324593..3324949	+	118	146340113	-	BRADO3128	-	hypothetical protein
2939	 58.82	-2	3325179..3325280	-	33	146340114	-	BRADO3129	-	hypothetical protein
2940	 67.85	0	3325604..3327466	-	620	146340115	-	BRADO3130	-	putative glutaminase
2941	 65.75	0	3327841..3328824	+	327	146340116	-	BRADO3131	-	IclR family transcriptional regulator
2942	 68.33	0	3328754..3330313	+	519	146340117	-	BRADO3132	-	putative methylmalonyl-CoA decarboxylase alpha chain
2943	 68.22	0	3330320..3331603	-	427	146340118	-	BRADO3133	-	MFS family transporter
2944	 68.69	0	3331689..3332876	-	395	146340119	atoB	BRADO3134	-	acetyl-CoA acetyltransferase
2945	 66.02	0	3333018..3333788	-	256	146340120	-	BRADO3135	-	enoyl-CoA hydratase
2946	 68.34	0	3333937..3334593	+	218	146340121	-	BRADO3136	-	TetR family transcriptional regulator
2947	 65.13	0	3334747..3336243	+	498	146340122	-	BRADO3137	-	methylmalonate-semialdehyde dehydrogenase
2948	 66.58	0	3336402..3337547	+	381	146340123	-	BRADO3138	-	acyl-CoA dehydrogenase
2949	 64.86	0	3337568..3338620	+	350	146340124	-	BRADO3139	-	enoyl-CoA hydratase
2950	 67.79	0	3338649..3339539	+	296	146340125	-	BRADO3140	-	putative 3-hydroxyisobutyrate dehydrogenase
2951	 66.67	0	3339539..3341266	+	575	146340126	-	BRADO3141	-	putative acetyl-CoA synthetase
2952	 61.22	-1	3341274..3341750	+	158	146340127	-	BRADO3142	-	nodN-like protein
2953	 66.45	0	3341876..3342793	+	305	146340128	-	BRADO3143	-	putative 3-oxo-(acyl) acyl carrier protein reductase
2954	 67.48	0	3342989..3344215	+	408	146340129	-	BRADO3144	-	putative signal peptide
2955	 67.59	0	3344422..3345501	-	359	146340130	-	BRADO3145	-	putative amino acid processing enzyme-related protein (aldolase or racemase)
2956	 66.89	0	3345703..3347511	-	602	146340131	-	BRADO3146	-	ABC transporter ATPase
2957	 68.08	0	3347519..3348013	-	164	146340132	-	BRADO3147	-	hypothetical protein
2958	 69.03	0	3348138..3348941	+	267	146340133	-	BRADO3148	-	hypothetical protein
2959	 66.84	0	3349340..3351715	-	791	146340134	-	BRADO3149	-	putative carbon-monoxide dehydrogenase large subunit
2960	 68.44	0	3352030..3352989	+	319	146340135	-	BRADO3150	-	putative exopolyphosphatase
2961	 66.52	0	3353138..3353833	+	231	146340136	ftsJ	BRADO3151	-	ribosomal RNA large subunit (23S) methyltransferase
2962	 69.55	+1	3353977..3354219	+	80	146340137	-	BRADO3152	-	hypothetical protein
2963	 66.97	0	3354329..3354661	+	110	146340138	-	BRADO3153	-	putative signal peptide
2964	 65.70	0	3354896..3355822	+	308	146340139	-	BRADO3154	-	hypothetical protein
2965	 66.05	0	3355819..3356307	+	162	146340140	-	BRADO3155	-	hypothetical protein
2966	 67.01	0	3356337..3357806	+	489	146340141	-	BRADO3156	-	hypothetical protein
2967	 67.98	0	3357860..3359077	+	405	146340142	-	BRADO3157	-	putative signal peptide
2968	 64.23	0	3359189..3359722	-	177	146340143	-	BRADO3158	-	hypothetical protein
2969	 65.28	0	3359899..3361194	+	431	146340144	-	BRADO3159	-	putative signal peptide
2970	 67.16	0	3361255..3363477	-	740	146340145	-	BRADO3160	-	putative oxidoreductase subunit protein
2971	 67.08	0	3363474..3363962	-	162	146340146	-	BRADO3161	-	putative oxidoreductase subunit protein
2972	 67.94	0	3363962..3365371	-	469	146340147	-	BRADO3162	-	putative alcohol dehydrogenase cytochrome c subunit protein
2973	 66.47	0	3365624..3367111	-	495	146340148	-	BRADO3163	-	putative multidrug efflux protein
2974	 69.08	0	3367244..3367492	+	82	146340149	-	BRADO3164	-	putative signal peptide
2975	 67.61	0	3367744..3369231	+	495	146340150	guaB	BRADO3165	-	inositol-5-monophosphate dehydrogenase
2976	 67.64	0	3369479..3370501	+	340	146340151	-	BRADO3166	-	putative NADP-dependent oxidoreductase
2977	 62.76	0	3370641..3370973	+	110	146340152	-	BRADO3167	-	hypothetical protein
2978	 71.13	+1	3370989..3372287	+	432	146340153	-	BRADO3168	-	putative SUN-family protein, RNA methyltransferase
2979	 66.54	0	3373161..3374768	+	535	146340154	guaA	BRADO3169	-	bifunctional GMP synthase/glutamine amidotransferase protein
2980	 56.76	-2	3375140..3375361	+	73	146340155	-	BRADO3170	-	hypothetical protein
2981	 57.07	-2	3376313..3377521	+	402	146340156	-	BRADO3171	-	hypothetical protein
2982	 68.18	0	3378369..3379427	-	352	146340157	-	BRADO3172	-	YeeE/YedE family membrane protein
2983	 62.39	-1	3379597..3379947	-	116	146340158	-	BRADO3173	-	Ars family transcriptional regulator
2984	 69.49	+1	3379972..3380361	-	129	146340159	-	BRADO3174	-	putative thioredoxin; putative SoxS protein
2985	 66.67	0	3380483..3381217	+	244	146340160	-	BRADO3175	-	putative transmembrane cytochrome C biogenesis protein, putative SoxV protein
2986	 70.85	+1	3381218..3381934	-	238	146340161	-	BRADO3176	-	putative signal peptide
2987	 65.76	0	3382057..3382605	+	182	146340162	-	BRADO3178	-	putative thioredoxin-like protein; SoxW precursor
2988	 61.27	-1	3382770..3383177	+	135	146340163	-	BRADO3179	-	putative monoheme cytochrome c sulfur oxidizing protein(SoxX)
2989	 64.90	0	3383198..3383650	+	150	146340164	-	BRADO3180	-	sulfur oxidation protein SoxY
2990	 59.02	-2	3383669..3383995	+	108	146340165	-	BRADO3181	-	putative sulfur oxidation protein (soxZ)
2991	 64.00	0	3384030..3384854	+	274	146340166	-	BRADO3182	-	putative sulfur oxidation protein (SoxA); cytochrome c precursor
2992	 65.51	0	3384908..3386554	+	548	146340167	-	BRADO3183	-	putative sulfur/thiosulfate oxidation protein (SoxB)
2993	 65.81	0	3386560..3387843	+	427	146340168	-	BRADO3184	-	putative sulfite oxidase (soxC)
2994	 64.74	0	3387782..3388561	+	259	146340169	-	BRADO3185	-	putative sulfite oxidase cytochrome subunit (SoxD)
2995	 67.59	0	3388588..3389022	+	144	146340170	-	BRADO3186	-	putative signal peptide
2996	 69.42	+1	3389034..3389942	+	302	146340171	-	BRADO3187	-	putative signal peptide
2997	 67.95	0	3389996..3390385	+	129	146340172	-	BRADO3188	-	hypothetical protein
2998	 71.12	+1	3390453..3391553	+	366	146340173	-	BRADO3189	-	hypothetical protein
2999	 64.27	0	3391647..3392189	+	180	146340174	-	BRADO3190	-	hypothetical protein
3000	 63.80	0	3392204..3392761	+	185	146340175	-	BRADO3191	-	hypothetical protein
3001	 67.25	0	3392810..3393151	+	113	146340176	-	BRADO3192	-	putative sulfurtransferase (rhodanese)
3002	 65.41	0	3393207..3393842	-	211	146340177	-	BRADO3193	-	putative disulfide bond formation protein D precursor (disulfide oxidoreductase D)
3003	 68.91	0	3393842..3395938	-	698	146340178	-	BRADO3194	-	putative suppressor for copper-sensitivity B; putative protein-disulfide reductase
3004	 67.93	0	3396105..3396500	-	131	146340179	-	BRADO3195	-	hypothetical protein
3005	 63.96	0	3396591..3397478	-	295	146340180	-	BRADO3196	-	metallo-hydrolase/oxidoreductase domain-containing protein
3006	 61.76	-1	3397547..3397750	-	67	146340181	-	BRADO3197	-	hypothetical protein
3007	 64.28	0	3397841..3398509	-	222	146340182	-	BRADO3198	-	CRP/FNR family transcriptional regulator
3008	 65.27	0	3398622..3398978	-	118	146340183	-	BRADO3199	-	putative carboxymuconolactone decarboxylase
3009	 66.35	0	3398985..3402182	-	1065	146340184	-	BRADO3200	-	AcrB/AcrD/AcrF family cation mulitdrug efflux protein
3010	 66.47	0	3402203..3403213	-	336	146340185	-	BRADO3201	-	RND family efflux pump membrane fusion protein
3011	 66.67	0	3403323..3403625	-	100	146340186	-	BRADO3202	-	Ars family transcriptional regulator
3012	 64.74	0	3403738..3405036	+	432	146340187	-	BRADO3203	-	sulfide-quinone reductase
3013	 68.25	0	3405033..3405473	+	146	146340188	-	BRADO3204	-	putative thioredoxin
3014	 59.36	-1	3405511..3405729	+	72	146340189	-	BRADO3205	-	hypothetical protein
3015	 64.45	0	3405775..3407220	+	481	146340190	fixG	BRADO3206	-	nitrogen fixation protein FixG
3016	 61.60	-1	3407386..3407622	+	78	146340191	-	BRADO3207	-	hypothetical protein
3017	 60.17	-1	3408168..3408398	+	76	146340192	-	BRADO3209	-	hypothetical protein
3018	 60.00	-1	3408620..3408889	-	89	146340193	-	BRADO3210	-	hypothetical protein
3019	 58.33	-2	3409450..3409773	+	107	146340194	-	BRADO3211	-	hypothetical protein
3020	 60.93	-1	3409783..3411282	+	499	146340195	-	BRADO3212	-	hypothetical protein
3021	 63.15	0	3411293..3412402	+	369	146340196	-	BRADO3213	-	putative AAA ATPase
3022	 63.62	0	3412435..3416598	+	1387	146340197	-	BRADO3214	-	hypothetical protein
3023	 64.31	0	3416648..3417622	+	324	146340198	-	BRADO3215	-	hypothetical protein
3024	 64.76	0	3417619..3417933	+	104	146340199	-	BRADO3216	-	hypothetical protein
3025	 61.48	-1	3418360..3419073	+	237	146340200	-	BRADO3217	-	hypothetical protein
3026	 59.90	-1	3419618..3419824	+	68	146340201	-	BRADO3218	-	hypothetical protein
3027	 61.78	-1	3419960..3421084	-	374	146340202	-	BRADO3220	-	putative Phage integrase
3028	 63.30	0	3421484..3421750	-	88	146340203	-	BRADO3221	-	putative signal peptide
3029	 58.78	-2	3421959..3422402	+	147	146340204	-	BRADO3222	-	putative signal peptide
3030	 63.83	0	3422623..3422904	-	93	146340205	-	BRADO3223	-	histone-like DNA-binding protein
3031	 68.91	0	3422975..3424222	-	415	146340206	-	BRADO3224	-	deoxyribodipyrimidine photo-lyase
65.78	MEAN

3.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.