IslandPathversion 1.0

IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.78 STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2748	 67.26	0	3133431..3133766	+	111	146339923	-	BRADO2927	-	Ars family transcriptional regulator
2749	 66.44	0	3133804..3134244	+	146	146339924	-	BRADO2928	-	hypothetical protein
2750	 69.18	+1	3134296..3134931	+	211	146339925	-	BRADO2929	-	putative glutathione S-transferase GSTF2 (GST-II)
2751	 63.54	0	3135092..3136690	+	532	146339926	-	BRADO2930	-	hypothetical protein
2752	 61.41	-1	3136811..3138427	+	538	146339927	-	BRADO2931	-	hypothetical protein
2753	 70.08	+1	3138545..3139276	-	243	146339928	-	BRADO2932	-	putative short chain oxidoreductase
2754	 59.90	-1	3139542..3139748	-	68	146339929	-	BRADO2933	-	hypothetical protein
2755	 70.32	+1	3139870..3140334	+	154	146339930	-	BRADO2934	-	putative signal peptide
2756	 71.25	+1	3140345..3141544	-	399	146339931	-	BRADO2935	-	putative salicylate hydroxylase (salicylate 1-monooxygenase)
2757	 62.14	-1	3141555..3141797	-	80	146339932	-	BRADO2936	-	hypothetical protein
2758	 72.97	+2	3142118..3143260	+	380	146339933	-	BRADO2937	-	putative signal peptide
2759	 69.18	+1	3143304..3144059	+	251	146339934	-	BRADO2938	-	putative hydrolase
2760	 65.89	0	3144162..3145577	-	471	146339935	-	BRADO2939	-	hypothetical protein
2761	 64.49	0	3145974..3146801	+	275	146339936	-	BRADO2940	-	serine acetyltransferase
2762	 57.75	-2	3147074..3147286	+	70	146339937	-	BRADO2941	-	hypothetical protein
2763	 68.10	0	3147615..3148313	-	232	146339938	-	BRADO2942	-	hypothetical protein
2764	 67.27	0	3148510..3148839	+	109	146339939	-	BRADO2943	-	putative exported protein
2765	 63.47	0	3148927..3149457	+	176	146339940	-	BRADO2944	-	hexapeptide repeat-containing protein
2766	 66.67	0	3149492..3149659	-	55	146339941	-	BRADO2945	-	hypothetical protein
2767	 65.26	0	3149656..3149940	-	94	146339942	-	BRADO2946	-	hypothetical protein
2768	 76.88	+2	3150104..3150289	+	61	146339943	-	BRADO2947	-	hypothetical protein
2769	 66.36	0	3150286..3150609	+	107	146339944	-	BRADO2948	-	hypothetical protein
2770	 62.33	-1	3150753..3151052	+	99	146339945	-	BRADO2949	-	hypothetical protein
2771	 69.57	+1	3151194..3151331	+	45	146339946	-	BRADO2950	-	hypothetical protein
2772	 64.39	0	3151548..3152906	+	452	146339947	-	BRADO2951	-	putative transposase
2773	 66.30	0	3153051..3153863	-	270	146339948	-	BRADO2952	-	putative carboxymethylenebutenolidase precursor (dienelactone hydrolase; DLH)
2774	 60.12	-1	3153841..3154161	+	106	146339949	-	BRADO2953	-	hypothetical protein
2775	 68.21	0	3154282..3154800	-	172	146339950	-	BRADO2954	-	hypothetical protein
2776	 65.28	0	3155053..3155340	-	95	146339951	-	BRADO2955	-	hypothetical protein
2777	 68.89	0	3155339..3155518	+	59	146339952	-	BRADO2956	-	hypothetical protein
2778	 64.49	0	3155732..3156328	-	198	146339953	-	BRADO2957	-	putative signal peptide
2779	 65.85	0	3156690..3157298	-	202	146339954	-	BRADO2958	-	hypothetical protein
2780	 68.64	0	3157581..3158138	-	185	146339955	-	BRADO2959	-	hypothetical protein
2781	 66.67	0	3158654..3159451	+	265	146339956	-	BRADO2960	-	hypothetical protein
2782	 65.27	0	3159736..3160164	+	142	146339957	-	BRADO2961	-	hypothetical protein
2783	 68.74	0	3160151..3161161	-	336	146339958	-	BRADO2962	-	hypothetical protein
2784	 66.93	0	3161757..3162506	+	249	146339959	-	BRADO2963	-	hypothetical protein
2785	 63.71	0	3162755..3164206	+	483	146339960	-	BRADO2964	-	putative transposase
2786	 64.16	0	3164481..3165839	-	452	146339961	-	BRADO2965	-	putative transposase
2787	 67.45	0	3166080..3166718	-	212	146339962	-	BRADO2966	-	TetR family transcriptional regulator
2788	 69.15	+1	3166817..3167662	+	281	146339963	-	BRADO2967	-	hypothetical protein
2789	 65.51	0	3168393..3170909	+	838	146339964	-	BRADO2968	-	hypothetical protein
2790	 69.61	+1	3171263..3171805	-	180	146339965	-	BRADO2969	-	putative NADH oxidase/flavin reductase family protein
2791	 70.38	+1	3172097..3173011	+	304	146339966	-	BRADO2970	-	hypothetical protein
2792	 64.88	0	3173141..3175207	-	688	146339967	thrS	BRADO2971	-	threonyl-tRNA synthetase
2793	 67.93	0	3175614..3176876	+	420	146339968	-	BRADO2973	-	hypothetical protein
2794	 68.18	0	3176952..3178142	+	396	146339969	-	BRADO2974	-	putative inner membrane transport protein
2795	 65.86	0	3178302..3178673	+	123	146339970	-	BRADO2975	-	putative signal peptide
2796	 67.20	0	3178701..3179831	-	376	146339971	-	BRADO2976	-	putative alpha/beta-hydrolase family protein
2797	 65.50	0	3180271..3181644	+	457	146339972	-	BRADO2977	-	putative amino acid transporter
2798	 64.88	0	3181648..3182880	+	410	146339973	-	BRADO2978	-	putative signal peptide
2799	 64.17	0	3182989..3183228	-	79	146339974	-	BRADO2979	-	hypothetical protein
2800	 66.29	0	3183376..3183639	-	87	146339975	-	BRADO2980	-	hypothetical protein
2801	 55.86	-2	3183710..3183820	-	36	146339976	-	BRADO2981	-	hypothetical protein
2802	 67.22	0	3183992..3184888	+	298	146339977	-	BRADO2982	-	putative signal peptide
2803	 66.23	0	3184967..3185425	-	152	146339978	-	BRADO2983	-	hypothetical protein
2804	 67.09	0	3185666..3186373	+	235	146339979	folE	BRADO2984	-	GTP cyclohydrolase I
2805	 65.39	0	3186452..3186844	+	130	146339980	hisI	BRADO2985	-	phosphoribosyl-AMP cyclohydrolase
2806	 67.64	0	3187030..3188061	+	343	146339981	-	BRADO2986	-	hypothetical protein
2807	 69.98	+1	3188341..3189516	+	391	146339982	-	BRADO2987	-	hypothetical protein
2808	 65.30	0	3189774..3190358	-	194	146339983	-	BRADO2988	-	two-component sensor protein
2809	 64.01	0	3190478..3190966	-	162	146339984	-	BRADO2989	-	response regulator receiver (CheY-like protein)
2810	 66.03	0	3191285..3192064	-	259	146339985	ppnK	BRADO2990	-	inorganic polyphosphate/ATP-NAD kinase
2811	 68.94	0	3192337..3194490	-	717	146339986	-	BRADO2991	-	adenylate/guanylyl cyclase
2812	 69.08	0	3194503..3195165	-	220	146339987	-	BRADO2992	-	putative signal peptide
2813	 66.67	0	3195386..3196957	+	523	146339988	-	BRADO2993	-	putative peptidase S10, serine carboxypeptidase; putative signal peptide
2814	 67.67	0	3197048..3198436	-	462	146339989	-	BRADO2994	-	putative beta lactamase family protein; putative D-alanyl-D-alanine carboxypeptidase
2815	 64.06	0	3198688..3199224	-	178	146339990	-	BRADO2995	-	putative signal peptide
2816	 65.39	0	3199519..3199911	+	130	146339991	-	BRADO2996	-	hypothetical protein
2817	 68.63	0	3199932..3200186	+	84	146339992	-	BRADO2997	-	hypothetical protein
2818	 67.34	0	3200062..3200508	+	148	146339993	-	BRADO2998	-	putative signal peptide
2819	 57.74	-2	3200711..3200878	-	55	146339994	-	BRADO2999	-	hypothetical protein
2820	 64.71	0	3200899..3201612	+	237	146339995	-	BRADO3000	-	putative outer-membrane immunogenic protein precursor; putative secreted protein
2821	 71.15	+1	3201894..3202049	+	51	146339996	-	BRADO3001	-	hypothetical protein
2822	 61.45	-1	3202202..3202450	-	82	146339997	-	BRADO3002	-	hypothetical protein
2823	 63.99	0	3202779..3203414	-	211	146339998	-	BRADO3003	-	hypothetical protein
2824	 68.33	0	3203961..3204440	-	159	146339999	-	BRADO3004	-	putative signal peptide
2825	 66.45	0	3204688..3205149	+	153	146340000	-	BRADO3005	-	putative signal peptide
2826	 65.83	0	3205209..3205688	+	159	146340001	-	BRADO3006	-	putative signal peptide
2827	 68.90	0	3205782..3206675	-	297	146340002	-	BRADO3007	-	putative rRNA methylase; putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like
2828	 64.33	0	3206798..3207097	-	99	146340003	-	BRADO3008	-	hypothetical protein
2829	 67.30	0	3207214..3209112	+	632	146340004	-	BRADO3009	-	putative acyltransferase
2830	 65.96	0	3209139..3210278	+	379	146340005	-	BRADO3011	-	hypothetical protein
2831	 62.69	0	3210415..3211017	+	200	146340006	-	BRADO3012	-	hypothetical protein
2832	 66.67	0	3211300..3211590	+	96	146340007	-	BRADO3013	-	hypothetical protein
2833	 62.69	0	3211690..3212016	-	108	146340008	-	BRADO3014	-	hypothetical protein
2834	 69.64	+1	3212203..3213144	-	313	146340009	-	BRADO3015	-	LysR family transcriptional regulator
2835	 67.80	0	3213254..3214135	+	293	146340010	-	BRADO3016	-	putative 3-hydroxyisobutyrate dehydrogenase
2836	 69.06	0	3214132..3215676	+	514	146340011	-	BRADO3017	-	putative aldehyde dehydrogenase family protein
2837	 65.10	0	3215753..3216709	+	318	146340012	-	BRADO3018	-	N-carbamoyl-D-amino acid hydrolase (D-N-alpha-carbamilase)
2838	 65.23	0	3217073..3218674	+	533	146340013	-	BRADO3019	-	putative ABC transporter periplasmic-binding protein; putative oligopeptide/dipeptide ABC transporter
2839	 64.65	0	3218689..3219630	+	313	146340014	-	BRADO3020	-	putative ABC transporter permease protein; putative oligopeptide/dipeptide transport protein
2840	 69.39	+1	3219627..3220544	+	305	146340015	-	BRADO3021	-	putative ABC transporter permease protein; putative oligopeptide/dipeptide ABC transporter
2841	 67.27	0	3220579..3221568	+	329	146340016	-	BRADO3022	-	ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein
2842	 68.10	0	3221565..3222539	+	324	146340017	-	BRADO3023	-	ABC transporter protein, ATP-binding protein; putative oligopeptide/dipeptide ABC transporter, ABC transporter
2843	 67.47	0	3223211..3223582	+	123	146340018	csaA	BRADO3024	-	secretion chaperone CsaA protein
2844	 65.65	0	3223598..3225559	+	653	146340019	-	BRADO3025	-	putative 1,4-alpha-glucan branching enzyme
2845	 67.85	0	3225876..3226805	-	309	146340020	-	BRADO3026	-	hypothetical protein
2846	 67.92	0	3226792..3227829	-	345	146340021	-	BRADO3027	-	hypothetical protein
2847	 69.54	+1	3228034..3228765	+	243	146340022	-	BRADO3028	-	putative MutT/nudix family protein
65.78	MEAN

3.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.