IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2704	 67.25	0	3081133..3082329	+	398	146339879	-	BRADO2881	-	hypothetical protein
2705	 65.74	0	3083207..3083854	+	215	146339880	-	BRADO2882	-	putative iron-sulfur-binding protein, subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase
2706	 67.40	0	3083851..3084801	+	316	146339881	-	BRADO2883	-	putative xanthine dehydrogenase, FAD binding subunit
2707	 66.53	0	3084804..3087023	+	739	146339882	-	BRADO2884	-	putative xanthine dehydrogenase, molybdenum binding subunit
2708	 62.91	0	3087447..3087659	+	70	146339883	-	BRADO2885	-	hypothetical protein
2709	 65.74	0	3087690..3088226	+	178	146339884	-	BRADO2886	-	putative HNH endonuclease:HNH nuclease
2710	 67.19	0	3089035..3090375	+	446	146339885	-	BRADO2887	-	hypothetical protein
2711	 62.96	0	3090532..3090774	+	80	146339886	-	BRADO2888	-	hypothetical protein
2712	 64.99	0	3090771..3091544	+	257	146339887	lepB	BRADO2889	-	Signal peptidase I (SPase I) (leader peptidase I)
2713	 69.18	+1	3091546..3092142	-	198	146339888	-	BRADO2890	-	putative isochorismatase family protein
2714	 67.02	0	3092266..3093105	+	279	146339889	-	BRADO2891	-	LysR family transcriptional regulator
2715	 65.75	0	3093555..3095195	-	546	146339890	groEL	BRADO2892	-	chaperonin GroEL
2716	 64.76	0	3095347..3095661	-	104	146339891	groES	BRADO2893	-	co-chaperonin GroES
2717	 60.00	-1	3096043..3096327	+	94	146339892	-	BRADO2894	-	putative Usg protein
2718	 62.15	-1	3096431..3096607	-	58	146339893	-	BRADO2895	-	hypothetical protein
2719	 63.96	0	3096558..3097148	+	196	146339894	-	BRADO2896	-	hypothetical protein
2720	 68.99	0	3097460..3099394	+	644	146339895	-	BRADO2897	-	hypothetical protein
2721	 69.06	0	3099332..3100582	-	416	146339896	-	BRADO2898	-	hypothetical protein
2722	 69.52	+1	3100701..3101927	+	408	146339897	-	BRADO2899	-	hypothetical protein
2723	 60.15	-1	3102092..3102628	+	178	146339898	-	BRADO2900	-	hypothetical protein
2724	 67.86	0	3102716..3103468	-	250	146339899	-	BRADO2901	-	putative oxidoreductase
2725	 63.11	0	3103515..3104273	-	252	146339900	-	BRADO2902	-	hypothetical protein
2726	 68.08	0	3104464..3105312	-	282	146339901	-	BRADO2903	-	hypothetical protein
2727	 64.13	0	3105393..3106337	-	314	146339902	-	BRADO2904	-	hypothetical protein
2728	 64.69	0	3106639..3108057	-	472	146339903	-	BRADO2906	-	hypothetical protein
2729	 65.99	0	3108286..3109023	+	245	146339904	-	BRADO2908	-	hypothetical protein
2730	 67.62	0	3109058..3109579	+	173	146339905	gpt	BRADO2909	-	xanthine-guanine phosphoribosyltransferase
2731	 69.08	0	3109721..3110341	+	206	146339906	-	BRADO2910	-	hypothetical protein
2732	 64.81	0	3110424..3111446	-	340	146339907	-	BRADO2911	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2733	 64.11	0	3111598..3112302	+	234	146339908	-	BRADO2912	-	putative glutathione transferase
2734	 64.84	0	3112570..3113172	+	200	146339909	-	BRADO2913	-	putative DSBA oxidoreductase
2735	 69.72	+1	3113172..3114152	+	326	146339910	-	BRADO2914	-	putative oxidoreductase
2736	 67.00	0	3114445..3115335	-	296	146339911	-	BRADO2915	-	enoyl-CoA hydratase
2737	 68.57	0	3115685..3117106	-	473	146339912	-	BRADO2916	-	amidase
2738	 66.75	0	3117173..3118336	-	387	146339913	-	BRADO2917	-	putative amidohydrolase family protein; putative hippurate hydrolase (benzoylglycine amidohydrolase)
2739	 67.86	0	3118573..3120078	-	501	146339914	-	BRADO2918	-	hypothetical protein
2740	 67.94	0	3120301..3121947	-	548	146339915	-	BRADO2919	-	ABC transporter ATP-binding protein
2741	 66.89	0	3122059..3122949	-	296	146339916	-	BRADO2920	-	putative ABC transporter (permease protein); putative membrane protein
2742	 63.48	0	3122961..3123902	-	313	146339917	-	BRADO2921	-	putative ABC transporter (permease protein); putative membrane protein
2743	 68.26	0	3124448..3125578	-	376	146339918	-	BRADO2922	-	carboxypeptidase
2744	 63.68	0	3125852..3127459	+	535	146339919	-	BRADO2923	-	putative ABC transporter (substrate-binding protein); putative exported protein
2745	 64.68	0	3127890..3129503	+	537	146339920	-	BRADO2924	-	putative ABC transporter (substrate-binding protein)
2746	 64.22	0	3130109..3131659	+	516	146339921	-	BRADO2925	-	putative ABC transporter substrate-binding protein
2747	 66.67	0	3131824..3133293	-	489	146339922	-	BRADO2926	-	putativ methyl-accepting chemotaxis protein
2748	 67.26	0	3133431..3133766	+	111	146339923	-	BRADO2927	-	Ars family transcriptional regulator
2749	 66.44	0	3133804..3134244	+	146	146339924	-	BRADO2928	-	hypothetical protein
2750	 69.18	+1	3134296..3134931	+	211	146339925	-	BRADO2929	-	putative glutathione S-transferase GSTF2 (GST-II)
2751	 63.54	0	3135092..3136690	+	532	146339926	-	BRADO2930	-	hypothetical protein
2752	 61.41	-1	3136811..3138427	+	538	146339927	-	BRADO2931	-	hypothetical protein
2753	 70.08	+1	3138545..3139276	-	243	146339928	-	BRADO2932	-	putative short chain oxidoreductase
2754	 59.90	-1	3139542..3139748	-	68	146339929	-	BRADO2933	-	hypothetical protein
2755	 70.32	+1	3139870..3140334	+	154	146339930	-	BRADO2934	-	putative signal peptide
2756	 71.25	+1	3140345..3141544	-	399	146339931	-	BRADO2935	-	putative salicylate hydroxylase (salicylate 1-monooxygenase)
2757	 62.14	-1	3141555..3141797	-	80	146339932	-	BRADO2936	-	hypothetical protein
2758	 72.97	+2	3142118..3143260	+	380	146339933	-	BRADO2937	-	putative signal peptide
2759	 69.18	+1	3143304..3144059	+	251	146339934	-	BRADO2938	-	putative hydrolase
2760	 65.89	0	3144162..3145577	-	471	146339935	-	BRADO2939	-	hypothetical protein
2761	 64.49	0	3145974..3146801	+	275	146339936	-	BRADO2940	-	serine acetyltransferase
2762	 57.75	-2	3147074..3147286	+	70	146339937	-	BRADO2941	-	hypothetical protein
2763	 68.10	0	3147615..3148313	-	232	146339938	-	BRADO2942	-	hypothetical protein
2764	 67.27	0	3148510..3148839	+	109	146339939	-	BRADO2943	-	putative exported protein
2765	 63.47	0	3148927..3149457	+	176	146339940	-	BRADO2944	-	hexapeptide repeat-containing protein
2766	 66.67	0	3149492..3149659	-	55	146339941	-	BRADO2945	-	hypothetical protein
2767	 65.26	0	3149656..3149940	-	94	146339942	-	BRADO2946	-	hypothetical protein
2768	 76.88	+2	3150104..3150289	+	61	146339943	-	BRADO2947	-	hypothetical protein
2769	 66.36	0	3150286..3150609	+	107	146339944	-	BRADO2948	-	hypothetical protein
2770	 62.33	-1	3150753..3151052	+	99	146339945	-	BRADO2949	-	hypothetical protein
2771	 69.57	+1	3151194..3151331	+	45	146339946	-	BRADO2950	-	hypothetical protein
2772	 64.39	0	3151548..3152906	+	452	146339947	-	BRADO2951	-	putative transposase
2773	 66.30	0	3153051..3153863	-	270	146339948	-	BRADO2952	-	putative carboxymethylenebutenolidase precursor (dienelactone hydrolase; DLH)
2774	 60.12	-1	3153841..3154161	+	106	146339949	-	BRADO2953	-	hypothetical protein
2775	 68.21	0	3154282..3154800	-	172	146339950	-	BRADO2954	-	hypothetical protein
2776	 65.28	0	3155053..3155340	-	95	146339951	-	BRADO2955	-	hypothetical protein
2777	 68.89	0	3155339..3155518	+	59	146339952	-	BRADO2956	-	hypothetical protein
2778	 64.49	0	3155732..3156328	-	198	146339953	-	BRADO2957	-	putative signal peptide
2779	 65.85	0	3156690..3157298	-	202	146339954	-	BRADO2958	-	hypothetical protein
2780	 68.64	0	3157581..3158138	-	185	146339955	-	BRADO2959	-	hypothetical protein
2781	 66.67	0	3158654..3159451	+	265	146339956	-	BRADO2960	-	hypothetical protein
2782	 65.27	0	3159736..3160164	+	142	146339957	-	BRADO2961	-	hypothetical protein
2783	 68.74	0	3160151..3161161	-	336	146339958	-	BRADO2962	-	hypothetical protein
2784	 66.93	0	3161757..3162506	+	249	146339959	-	BRADO2963	-	hypothetical protein
2785	 63.71	0	3162755..3164206	+	483	146339960	-	BRADO2964	-	putative transposase
2786	 64.16	0	3164481..3165839	-	452	146339961	-	BRADO2965	-	putative transposase
2787	 67.45	0	3166080..3166718	-	212	146339962	-	BRADO2966	-	TetR family transcriptional regulator
2788	 69.15	+1	3166817..3167662	+	281	146339963	-	BRADO2967	-	hypothetical protein
2789	 65.51	0	3168393..3170909	+	838	146339964	-	BRADO2968	-	hypothetical protein
2790	 69.61	+1	3171263..3171805	-	180	146339965	-	BRADO2969	-	putative NADH oxidase/flavin reductase family protein
2791	 70.38	+1	3172097..3173011	+	304	146339966	-	BRADO2970	-	hypothetical protein
2792	 64.88	0	3173141..3175207	-	688	146339967	thrS	BRADO2971	-	threonyl-tRNA synthetase
2793	 67.93	0	3175614..3176876	+	420	146339968	-	BRADO2973	-	hypothetical protein
2794	 68.18	0	3176952..3178142	+	396	146339969	-	BRADO2974	-	putative inner membrane transport protein
2795	 65.86	0	3178302..3178673	+	123	146339970	-	BRADO2975	-	putative signal peptide
2796	 67.20	0	3178701..3179831	-	376	146339971	-	BRADO2976	-	putative alpha/beta-hydrolase family protein
2797	 65.50	0	3180271..3181644	+	457	146339972	-	BRADO2977	-	putative amino acid transporter
2798	 64.88	0	3181648..3182880	+	410	146339973	-	BRADO2978	-	putative signal peptide
2799	 64.17	0	3182989..3183228	-	79	146339974	-	BRADO2979	-	hypothetical protein
2800	 66.29	0	3183376..3183639	-	87	146339975	-	BRADO2980	-	hypothetical protein
2801	 55.86	-2	3183710..3183820	-	36	146339976	-	BRADO2981	-	hypothetical protein
2802	 67.22	0	3183992..3184888	+	298	146339977	-	BRADO2982	-	putative signal peptide
2803	 66.23	0	3184967..3185425	-	152	146339978	-	BRADO2983	-	hypothetical protein
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.