IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2248	 64.49	0	2566564..2566884	-	106	146339423	-	BRADO2409	-	putative sulfur oxidation protein soxZ
2249	 67.08	0	2566884..2567372	-	162	146339424	-	BRADO2410	-	sulfur oxidation protein SoxY
2250	 71.22	+1	2567379..2567795	-	138	146339425	-	BRADO2411	-	putative cytochrome c, putative soxX protein
2251	 67.92	0	2567809..2569089	-	426	146339426	-	BRADO2412	-	sulfide dehydrogenase
2252	 66.57	0	2569145..2571316	-	723	146339427	-	BRADO2413	-	isoquinoline 1-oxidoreductase beta subunit
2253	 64.44	0	2571340..2571789	-	149	146339428	-	BRADO2414	-	isoquinoline 1-oxidoreductase alpha subunit
2254	 69.63	+1	2571927..2573375	-	482	146339429	-	BRADO2415	-	MFS family transporter
2255	 65.08	0	2573905..2574282	+	125	146339430	-	BRADO2416	-	hypothetical protein
2256	 62.71	0	2574362..2574841	-	159	146339431	-	BRADO2417	-	hypothetical protein
2257	 64.60	0	2574939..2576486	+	515	146339432	-	BRADO2418	-	transcriptional regulator
2258	 57.61	-2	2576737..2577321	-	194	146339433	-	BRADO2419	-	hypothetical protein
2259	 59.44	-1	2577504..2577683	-	59	146339434	-	BRADO2420	-	hypothetical protein
2260	 62.50	0	2577845..2578204	-	119	146339435	-	BRADO2421	-	hypothetical protein
2261	 63.27	0	2578489..2580285	-	598	146339436	-	BRADO2422	-	hypothetical protein
2262	 71.07	+1	2580628..2581263	-	211	146339437	-	BRADO2423	-	GntR family transcriptional regulator
2263	 65.87	0	2581419..2582423	+	334	146339438	bioB	BRADO2424	-	biotin synthetase
2264	 65.86	0	2582634..2584499	+	621	146339439	-	BRADO2425	-	hypothetical protein
2265	 64.37	0	2584643..2585863	+	406	146339440	-	BRADO2426	-	putative diguanylate cyclase (GGDEF)
2266	 64.33	0	2585958..2587028	-	356	146339441	-	BRADO2427	-	putative glycosyl transferase
2267	 65.62	0	2587452..2589077	+	541	146339442	-	BRADO2428	-	putative fused ATP-binding/permease protein
2268	 66.67	0	2589144..2591345	+	733	146339443	-	BRADO2429	-	hypothetical protein
2269	 66.08	0	2591342..2591851	+	169	146339444	-	BRADO2430	-	putative signal peptide
2270	 66.75	0	2592028..2593269	+	413	146339445	-	BRADO2431	-	major facilitator superfamily permease
2271	 66.53	0	2593282..2593989	-	235	146339446	fixK	BRADO2432	-	transcriptional regulator FixK
2272	 63.38	0	2594120..2594515	-	131	146339447	-	BRADO2433	-	putative two component response regulator receiver (CheY-like protein) corresponding to a FixJ-like fragment.
2273	 63.92	0	2594593..2595210	-	205	146339448	fixJ	BRADO2434	-	response regulator FixJ
2274	 66.93	0	2595203..2596714	-	503	146339449	fixL	BRADO2435	-	sensor protein
2275	 70.77	+1	2597155..2597886	+	243	146339450	-	BRADO2436	-	hypothetical protein
2276	 62.21	-1	2597923..2598348	+	141	146339451	-	BRADO2437	-	hypothetical protein
2277	 63.30	0	2598528..2600222	+	564	146339452	-	BRADO2438	-	cytochrome c oxidase polypeptide I
2278	 62.67	0	2600219..2600968	+	249	146339453	ccoO	BRADO2439	-	cytochrome-c oxidase fixO chain
2279	 61.79	-1	2601029..2601151	+	40	146339454	-	BRADO2440	-	cytochrome oxidase subunit, FixQ
2280	 65.86	0	2601158..2602030	+	290	146339455	ccoP	BRADO2441	-	cytochrome-c oxidase fixP chain
2281	 63.97	0	2602130..2603611	+	493	146339456	fixG	BRADO2442	-	nitrogen fixation protein FixG
2282	 67.56	0	2603684..2604130	+	148	146339457	-	BRADO2443	-	nitrogen fixation protein fixH
2283	 68.30	0	2604145..2606346	+	733	146339458	-	BRADO2444	-	nitrogen fixation protein fixI
2284	 70.06	+1	2606346..2606522	+	58	146339459	-	BRADO2445	-	nitrogen fixation protein fixS
2285	 69.05	0	2606492..2607793	-	433	146339460	-	BRADO2446	-	putative transporter
2286	 64.02	0	2607800..2608291	-	163	146339461	-	BRADO2447	-	putative signal peptide
2287	 68.35	0	2608755..2609468	+	237	146339462	-	BRADO2448	-	hypothetical protein
2288	 68.13	0	2609487..2610377	-	296	146339463	-	BRADO2449	-	LysR family transcriptional regulator
2289	 72.97	+2	2610586..2610696	+	36	146339464	-	BRADO2450	-	hypothetical protein
2290	 65.62	0	2610767..2611918	+	383	146339465	-	BRADO2451	-	hypothetical protein
2291	 67.04	0	2612160..2614283	+	707	146339466	-	BRADO2452	-	putative receptor/sensory transducer
2292	 66.89	0	2614440..2615810	-	456	146339467	glgA	BRADO2453	-	glycogen synthase
2293	 66.39	0	2616194..2617261	+	355	146339468	-	BRADO2455	-	putative formyl-coenzyme A transferase
2294	 66.58	0	2617472..2618563	+	363	146339469	-	BRADO2457	-	putative NAD-dependent alcohol dehydrogenase
2295	 66.57	0	2618692..2619771	+	359	146339470	-	BRADO2458	-	putative 3-isopropylmalate dehydrogenase (leuB)
2296	 66.81	0	2619787..2621187	-	466	146339471	-	BRADO2459	-	putative transporter
2297	 69.07	0	2621225..2623099	-	624	146339472	-	BRADO2460	-	adenine deaminase
2298	 70.68	+1	2623115..2623786	-	223	146339473	-	BRADO2461	-	TetR family transcriptional regulator
2299	 68.14	0	2623897..2624709	-	270	146339474	-	BRADO2462	-	enoyl-CoA hydratase
2300	 60.35	-1	2625081..2625476	-	131	146339475	-	BRADO2463	-	putative transcriptional regulatory protein.
2301	 63.31	0	2625484..2626704	-	406	146339476	-	BRADO2464	-	LysR family transcriptional regulator
2302	 61.38	-1	2627263..2627508	+	81	146339477	-	BRADO2466	-	hypothetical protein
2303	 67.35	0	2627864..2628598	+	244	146339478	-	BRADO2467	-	putative transmembrane cytochrome C biogenesis protein
2304	 65.41	0	2628608..2630122	-	504	146339479	-	BRADO2468	-	putative sensor histidine kinase
2305	 65.62	0	2630345..2631682	-	445	146339480	-	BRADO2469	-	putative beta-lactamase
2306	 64.92	0	2631769..2632686	+	305	146339481	-	BRADO2470	-	putative catechol 1,2-dioxygenase
2307	 64.09	0	2633009..2634325	+	438	146339482	nrtA	BRADO2471	-	ABC transporter nitrate-binding protein (nrtA)
2308	 65.52	0	2634431..2635300	+	289	146339483	nrtB	BRADO2472	-	nitrate transport permease protein (nrtB)
2309	 64.90	0	2635314..2636105	+	263	146339484	nrtC	BRADO2473	-	nitrate transport protein; ABC transporter ATP-binding protein
2310	 66.67	0	2636217..2636621	+	134	146339485	-	BRADO2474	-	putative nitric oxide dioxygenase (NOD); flavohemoprotein
2311	 68.95	0	2636660..2637841	+	393	146339486	nasD	BRADO2475	-	nitrite reductase [NAD(P)H], large subunit
2312	 68.80	0	2637838..2640552	+	904	146339487	nasA	BRADO2476	-	nitrate reductase, large subunit
2313	 66.67	0	2640683..2641531	+	282	146339488	-	BRADO2477	-	putative aldo/keto reductase
2314	 66.88	0	2641729..2642682	+	317	146339489	-	BRADO2478	-	putative transmembrane protein
2315	 66.50	0	2642894..2644066	+	390	146339490	-	BRADO2479	-	hypothetical protein
2316	 69.77	+1	2644308..2645693	-	461	146339491	-	BRADO2480	-	putative transmembrane component
2317	 70.73	+1	2645988..2647241	-	417	146339492	-	BRADO2481	-	putative ferredoxin--NAD(+) reductase
2318	 64.55	0	2647292..2648473	-	393	146339493	-	BRADO2482	-	putative ferredoxin-type membrane protein
2319	 65.22	0	2648890..2649372	-	160	146339494	-	BRADO2483	-	hypothetical protein
2320	 64.07	0	2649726..2650187	-	153	146339495	-	BRADO2484	-	AsnC/Lrp family transcriptional regulator
2321	 66.50	0	2650247..2652715	+	822	146339496	-	BRADO2485	-	putative dehydrogenase
2322	 66.46	0	2653209..2654639	+	476	146339497	-	BRADO2486	-	aldehyde dehydrogenase
2323	 65.43	0	2654751..2655719	-	322	146339498	-	BRADO2487	-	putative gluconolactonase
2324	 65.31	0	2655893..2656627	+	244	146339499	-	BRADO2488	-	putative UDP-glucose 4-epimerase
2325	 65.62	0	2656715..2658433	+	572	146339500	-	BRADO2489	-	dihydroxy-acid dehydratase
2326	 68.52	0	2658442..2659197	-	251	146339501	-	BRADO2490	-	putative enoyl-CoA hydratase
2327	 65.86	0	2659378..2660613	+	411	146339502	-	BRADO2491	-	putative ferredoxin--NAD(+) reductase
2328	 69.20	+1	2660610..2661518	-	302	146339503	-	BRADO2492	-	ribokinase
2329	 63.44	0	2661540..2662439	-	299	146339504	-	BRADO2493	-	putative sugar kinase
2330	 64.67	0	2662599..2663897	+	432	146339505	gdh	BRADO2494	-	glutamate dehydrogenase (NAD(P)+) oxidoreductase protein
2331	 68.79	0	2663894..2664742	+	282	146339506	-	BRADO2495	-	putative glyoxalase/bleomycin resistance protein/dioxygenase family protein
2332	 69.64	+1	2665212..2666153	+	313	146339507	-	BRADO2496	-	hypothetical protein
2333	 63.71	0	2666264..2667715	-	483	146339508	-	BRADO2497	-	putative transposase
2334	 66.83	0	2668481..2669710	-	409	146339509	-	BRADO2499	-	putative cytochrome P450
2335	 64.77	0	2669980..2670666	+	228	146339510	-	BRADO2500	-	TetR family transcriptional regulator
2336	 66.92	0	2670668..2671858	+	396	146339511	-	BRADO2501	-	putative RND efflux membrane fusion protein precursor
2337	 64.70	0	2671940..2675038	+	1032	146339512	-	BRADO2502	-	RND family multidrug efflux protein
2338	 69.55	+1	2675320..2676150	-	276	146339513	-	BRADO2503	-	ABC transporter permease protein; putative dipeptide transport protein
2339	 65.29	0	2676212..2677153	-	313	146339514	yliC	BRADO2504	-	ABC transporter permease protein; putative dipeptide transport protein
2340	 64.63	0	2677305..2678777	-	490	146339515	-	BRADO2505	-	putative ABC transporter substrate-binding protein
2341	 67.93	0	2678902..2679612	-	236	146339516	-	BRADO2506	-	hypothetical protein
2342	 69.44	+1	2679628..2681430	-	600	146339517	-	BRADO2507	-	putative gamma-glutamyltranspeptidase
2343	 67.08	0	2681572..2682543	-	323	146339518	-	BRADO2508	-	putative ATP-binding protein of oligopeptide ABC transporter
2344	 68.29	0	2682576..2683559	-	327	146339519	-	BRADO2509	-	putative oligopeptide ABC transporter ATP-binding protein
2345	 66.25	0	2683606..2684574	-	322	146339520	-	BRADO2510	-	putative oligopeptide ABC transporter (permease protein)
2346	 63.40	0	2684577..2685557	-	326	146339521	-	BRADO2511	-	putative oligopeptide ABC transporter (permease protein)
2347	 62.84	0	2685665..2687260	-	531	146339522	-	BRADO2512	-	putative oligopeptide ABC transporter (substrate-binding protein)
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.