IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2211	 70.35	+1	2523726..2524403	-	225	146339386	-	BRADO2370	-	putative membrane protein
2212	 68.63	0	2524733..2525647	+	304	146339387	-	BRADO2372	-	phenylacetic acid degradation-related protein
2213	 65.25	0	2525670..2526023	-	117	146339388	-	BRADO2373	-	hypothetical protein
2214	 69.04	0	2526087..2527601	-	504	146339389	-	BRADO2374	-	hypothetical protein
2215	 68.47	0	2527759..2528478	+	239	146339390	-	BRADO2375	-	putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
2216	 69.87	+1	2528471..2529748	+	425	146339391	-	BRADO2376	-	putative amine oxidase (flavin-containing)
2217	 66.53	0	2529875..2532139	+	754	146339392	-	BRADO2377	-	putative phosphodiesterase-nucleotide pyrophosphatase
2218	 68.63	0	2532158..2533177	-	339	146339393	-	BRADO2378	-	LysR family transcriptional regulator
2219	 63.84	0	2533215..2533568	+	117	146339394	-	BRADO2379	-	protocatechuate 4,5-dioxygenase subunit alpha
2220	 64.16	0	2533574..2534410	+	278	146339395	mhpB	BRADO2380	-	protocatechuate 4,5-dioxygenase subunit beta
2221	 67.00	0	2534730..2535032	-	100	146339396	-	BRADO2381	-	hypothetical protein
2222	 70.43	+1	2535063..2535752	-	229	146339397	-	BRADO2382	-	hypothetical protein
2223	 64.75	0	2535866..2538943	-	1025	146339398	-	BRADO2383	-	AcrB/AcrD/AcrF family mulitdrug efflux protein
2224	 64.73	0	2538973..2540055	-	360	146339399	-	BRADO2384	-	putative RND efflux membrane fusion protein
2225	 67.30	0	2540088..2541668	-	526	146339400	-	BRADO2385	-	putative outer membrane efflux protein
2226	 65.52	0	2542046..2543005	-	319	146339401	-	BRADO2386	-	hypothetical protein
2227	 67.73	0	2543281..2543844	-	187	146339402	-	BRADO2387	-	MarR family transcriptional regulator
2228	 65.26	0	2543983..2545119	+	378	146339403	-	BRADO2388	-	putative metal-dependent hydrolase; putative amidohydrolase
2229	 67.42	0	2545161..2545955	-	264	146339404	-	BRADO2389	-	putative extracellular solute-binding protein
2230	 65.31	0	2545991..2547313	-	440	146339405	dctA	BRADO2390	-	C4-dicarboxylate transport protein
2231	 64.72	0	2547362..2548387	-	341	146339406	-	BRADO2391	-	putative amidohydrolase; putative signal peptide
2232	 65.42	0	2548419..2549867	-	482	146339407	-	BRADO2392	-	putative MmgE/PrpD family protein
2233	 68.69	0	2550313..2551545	+	410	146339408	-	BRADO2393	-	acetyl-CoA acetyltransferase
2234	 67.06	0	2551783..2553570	+	595	146339409	-	BRADO2394	-	CLC-type chloride channel protein
2235	 69.53	+1	2553652..2554980	+	442	146339410	-	BRADO2395	-	putative L-sorbosone dehydrogenase
2236	 64.27	0	2555053..2555886	+	277	146339411	cyoA	BRADO2396	-	cytochrome o ubiquinol oxidase, subunit II
2237	 67.60	0	2555911..2556552	+	213	146339412	cyoC	BRADO2397	-	cytochrome o ubiquinol oxidase, subunit III
2238	 64.22	0	2556549..2556956	+	135	146339413	cyoD	BRADO2398	-	cytochrome O ubiquinol oxidase protein subunit IV
2239	 68.56	0	2557114..2557905	-	263	146339414	-	BRADO2399	-	putative signal peptide
2240	 69.76	+1	2558034..2559068	+	344	146339415	HtrA	BRADO2400	-	serine protease DO-like precursor
2241	 66.81	0	2560481..2561167	+	228	146339416	-	BRADO2402	-	putative isochorismatase
2242	 66.30	0	2561253..2562908	+	551	146339417	-	BRADO2403	-	hypothetical protein
2243	 68.09	0	2563084..2563575	-	163	146339418	-	BRADO2404	-	putative thiol-disulfide oxidoreductase
2244	 64.38	0	2563682..2564074	-	130	146339419	-	BRADO2405	-	hypothetical protein
2245	 68.52	0	2564217..2564648	-	143	146339420	-	BRADO2406	-	hypothetical protein
2246	 67.39	0	2564743..2565708	+	321	146339421	-	BRADO2407	-	LysR family transcriptional regulator
2247	 67.70	0	2565791..2566567	-	258	146339422	-	BRADO2408	-	putative diheme cytochrome C; sulfur oxidizing protein soxA
2248	 64.49	0	2566564..2566884	-	106	146339423	-	BRADO2409	-	putative sulfur oxidation protein soxZ
2249	 67.08	0	2566884..2567372	-	162	146339424	-	BRADO2410	-	sulfur oxidation protein SoxY
2250	 71.22	+1	2567379..2567795	-	138	146339425	-	BRADO2411	-	putative cytochrome c, putative soxX protein
2251	 67.92	0	2567809..2569089	-	426	146339426	-	BRADO2412	-	sulfide dehydrogenase
2252	 66.57	0	2569145..2571316	-	723	146339427	-	BRADO2413	-	isoquinoline 1-oxidoreductase beta subunit
2253	 64.44	0	2571340..2571789	-	149	146339428	-	BRADO2414	-	isoquinoline 1-oxidoreductase alpha subunit
2254	 69.63	+1	2571927..2573375	-	482	146339429	-	BRADO2415	-	MFS family transporter
2255	 65.08	0	2573905..2574282	+	125	146339430	-	BRADO2416	-	hypothetical protein
2256	 62.71	0	2574362..2574841	-	159	146339431	-	BRADO2417	-	hypothetical protein
2257	 64.60	0	2574939..2576486	+	515	146339432	-	BRADO2418	-	transcriptional regulator
2258	 57.61	-2	2576737..2577321	-	194	146339433	-	BRADO2419	-	hypothetical protein
2259	 59.44	-1	2577504..2577683	-	59	146339434	-	BRADO2420	-	hypothetical protein
2260	 62.50	0	2577845..2578204	-	119	146339435	-	BRADO2421	-	hypothetical protein
2261	 63.27	0	2578489..2580285	-	598	146339436	-	BRADO2422	-	hypothetical protein
2262	 71.07	+1	2580628..2581263	-	211	146339437	-	BRADO2423	-	GntR family transcriptional regulator
2263	 65.87	0	2581419..2582423	+	334	146339438	bioB	BRADO2424	-	biotin synthetase
2264	 65.86	0	2582634..2584499	+	621	146339439	-	BRADO2425	-	hypothetical protein
2265	 64.37	0	2584643..2585863	+	406	146339440	-	BRADO2426	-	putative diguanylate cyclase (GGDEF)
2266	 64.33	0	2585958..2587028	-	356	146339441	-	BRADO2427	-	putative glycosyl transferase
2267	 65.62	0	2587452..2589077	+	541	146339442	-	BRADO2428	-	putative fused ATP-binding/permease protein
2268	 66.67	0	2589144..2591345	+	733	146339443	-	BRADO2429	-	hypothetical protein
2269	 66.08	0	2591342..2591851	+	169	146339444	-	BRADO2430	-	putative signal peptide
2270	 66.75	0	2592028..2593269	+	413	146339445	-	BRADO2431	-	major facilitator superfamily permease
2271	 66.53	0	2593282..2593989	-	235	146339446	fixK	BRADO2432	-	transcriptional regulator FixK
2272	 63.38	0	2594120..2594515	-	131	146339447	-	BRADO2433	-	putative two component response regulator receiver (CheY-like protein) corresponding to a FixJ-like fragment.
2273	 63.92	0	2594593..2595210	-	205	146339448	fixJ	BRADO2434	-	response regulator FixJ
2274	 66.93	0	2595203..2596714	-	503	146339449	fixL	BRADO2435	-	sensor protein
2275	 70.77	+1	2597155..2597886	+	243	146339450	-	BRADO2436	-	hypothetical protein
2276	 62.21	-1	2597923..2598348	+	141	146339451	-	BRADO2437	-	hypothetical protein
2277	 63.30	0	2598528..2600222	+	564	146339452	-	BRADO2438	-	cytochrome c oxidase polypeptide I
2278	 62.67	0	2600219..2600968	+	249	146339453	ccoO	BRADO2439	-	cytochrome-c oxidase fixO chain
2279	 61.79	-1	2601029..2601151	+	40	146339454	-	BRADO2440	-	cytochrome oxidase subunit, FixQ
2280	 65.86	0	2601158..2602030	+	290	146339455	ccoP	BRADO2441	-	cytochrome-c oxidase fixP chain
2281	 63.97	0	2602130..2603611	+	493	146339456	fixG	BRADO2442	-	nitrogen fixation protein FixG
2282	 67.56	0	2603684..2604130	+	148	146339457	-	BRADO2443	-	nitrogen fixation protein fixH
2283	 68.30	0	2604145..2606346	+	733	146339458	-	BRADO2444	-	nitrogen fixation protein fixI
2284	 70.06	+1	2606346..2606522	+	58	146339459	-	BRADO2445	-	nitrogen fixation protein fixS
2285	 69.05	0	2606492..2607793	-	433	146339460	-	BRADO2446	-	putative transporter
2286	 64.02	0	2607800..2608291	-	163	146339461	-	BRADO2447	-	putative signal peptide
2287	 68.35	0	2608755..2609468	+	237	146339462	-	BRADO2448	-	hypothetical protein
2288	 68.13	0	2609487..2610377	-	296	146339463	-	BRADO2449	-	LysR family transcriptional regulator
2289	 72.97	+2	2610586..2610696	+	36	146339464	-	BRADO2450	-	hypothetical protein
2290	 65.62	0	2610767..2611918	+	383	146339465	-	BRADO2451	-	hypothetical protein
2291	 67.04	0	2612160..2614283	+	707	146339466	-	BRADO2452	-	putative receptor/sensory transducer
2292	 66.89	0	2614440..2615810	-	456	146339467	glgA	BRADO2453	-	glycogen synthase
2293	 66.39	0	2616194..2617261	+	355	146339468	-	BRADO2455	-	putative formyl-coenzyme A transferase
2294	 66.58	0	2617472..2618563	+	363	146339469	-	BRADO2457	-	putative NAD-dependent alcohol dehydrogenase
2295	 66.57	0	2618692..2619771	+	359	146339470	-	BRADO2458	-	putative 3-isopropylmalate dehydrogenase (leuB)
2296	 66.81	0	2619787..2621187	-	466	146339471	-	BRADO2459	-	putative transporter
2297	 69.07	0	2621225..2623099	-	624	146339472	-	BRADO2460	-	adenine deaminase
2298	 70.68	+1	2623115..2623786	-	223	146339473	-	BRADO2461	-	TetR family transcriptional regulator
2299	 68.14	0	2623897..2624709	-	270	146339474	-	BRADO2462	-	enoyl-CoA hydratase
2300	 60.35	-1	2625081..2625476	-	131	146339475	-	BRADO2463	-	putative transcriptional regulatory protein.
2301	 63.31	0	2625484..2626704	-	406	146339476	-	BRADO2464	-	LysR family transcriptional regulator
2302	 61.38	-1	2627263..2627508	+	81	146339477	-	BRADO2466	-	hypothetical protein
2303	 67.35	0	2627864..2628598	+	244	146339478	-	BRADO2467	-	putative transmembrane cytochrome C biogenesis protein
2304	 65.41	0	2628608..2630122	-	504	146339479	-	BRADO2468	-	putative sensor histidine kinase
2305	 65.62	0	2630345..2631682	-	445	146339480	-	BRADO2469	-	putative beta-lactamase
2306	 64.92	0	2631769..2632686	+	305	146339481	-	BRADO2470	-	putative catechol 1,2-dioxygenase
2307	 64.09	0	2633009..2634325	+	438	146339482	nrtA	BRADO2471	-	ABC transporter nitrate-binding protein (nrtA)
2308	 65.52	0	2634431..2635300	+	289	146339483	nrtB	BRADO2472	-	nitrate transport permease protein (nrtB)
2309	 64.90	0	2635314..2636105	+	263	146339484	nrtC	BRADO2473	-	nitrate transport protein; ABC transporter ATP-binding protein
2310	 66.67	0	2636217..2636621	+	134	146339485	-	BRADO2474	-	putative nitric oxide dioxygenase (NOD); flavohemoprotein
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.