IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2056	 64.05	0	2328505..2329764	-	419	146339231	-	BRADO2197	-	hypothetical protein
2057	 57.30	-2	2329823..2330527	-	234	146339232	-	BRADO2198	-	hypothetical protein
2058	 57.40	-2	2330797..2331357	-	186	146339233	-	BRADO2199	-	hypothetical protein
2059	 67.21	0	2331814..2333100	+	428	146339234	-	BRADO2200	-	putative permease protein; putative membrane protein
2060	 64.02	0	2333192..2334478	-	428	146339235	-	BRADO2201	-	glycosyl transferase
2061	 66.46	0	2334726..2335700	-	324	146339236	-	BRADO2202	-	putative aldo/keto reductase
2062	 65.23	0	2335697..2337436	-	579	146339237	-	BRADO2203	-	hypothetical protein
2063	 61.57	-1	2337731..2338750	+	339	146339238	-	BRADO2204	-	hypothetical protein
2064	 58.86	-2	2338750..2340183	+	477	146339239	-	BRADO2205	-	putative alginate o-acetyltransferase AlgI
2065	 60.21	-1	2340247..2341206	-	319	146339240	-	BRADO2206	-	S-adenosyl-L-methionine-dependent methyltransferase
2066	 62.83	0	2341215..2343014	-	599	146339241	-	BRADO2207	-	putative carbamoyltransferase family protein
2067	 61.88	-1	2343193..2345385	-	730	146339242	-	BRADO2208	-	hypothetical protein
2068	 58.33	-2	2345408..2346319	-	303	146339243	-	BRADO2209	-	putative glycosyl transferase, group 2 family protein
2069	 62.46	-1	2346386..2347312	-	308	146339244	-	BRADO2210	-	putative peptidylprolyl isomerase
2070	 64.62	0	2347669..2349180	+	503	146339245	-	BRADO2211	-	putative phosphatase; putative signal peptide
2071	 63.28	0	2350647..2363810	+	4387	146339246	-	BRADO2213	-	Purtative large exoprotein involved in heme utilization or adhesion
2072	 61.11	-1	2363862..2364167	-	101	146339247	-	BRADO2214	-	hypothetical protein
2073	 63.05	0	2365040..2366146	+	368	146339248	-	BRADO2217	-	putative capsule polysaccharide export outer membrane protein precursor
2074	 63.53	0	2366200..2367411	+	403	146339249	-	BRADO2218	-	putative glycosyl transferase
2075	 64.54	0	2367365..2367646	-	93	146339250	-	BRADO2219	-	hypothetical protein
2076	 67.17	0	2368103..2368300	+	65	146339251	-	BRADO2221	-	hypothetical protein
2077	 65.53	0	2368444..2369148	+	234	146339252	-	BRADO2222	-	transglycosylase
2078	 62.28	-1	2369462..2370214	-	250	146339253	-	BRADO2224	-	RNA polymerase ECF-subfamily sigma-70 factor
2079	 61.06	-1	2370564..2372258	+	564	146339254	-	BRADO2225	-	putative signal peptide;putative hemolysin activation/secretion protein
2080	 66.51	0	2372259..2374214	+	651	146339255	-	BRADO2226	-	biopolymer transport protein ExbB/TolQ family
2081	 57.78	-2	2374219..2374623	+	134	146339256	-	BRADO2227	-	biopolymer transport protein ExbD/TolR family
2082	 69.99	+1	2374620..2375372	+	250	146339257	-	BRADO2228	-	hypothetical protein
2083	 58.18	-2	2375405..2377300	+	631	146339258	-	BRADO2229	-	putative signal peptide
2084	 65.82	0	2377302..2377895	+	197	146339259	-	BRADO2230	-	putative signal peptide
2085	 70.37	+1	2377892..2378917	+	341	146339260	-	BRADO2231	-	putative peptidylprolyl isomerase
2086	 63.95	0	2379127..2380596	+	489	146339261	-	BRADO2232	-	putative UDP-glucose lipid carrier transferase; putative membrane protein
2087	 59.06	-2	2380864..2381205	+	113	146339262	-	BRADO2233	-	putative transposase
2088	 64.97	0	2381364..2383721	-	785	146339263	-	BRADO2234	-	putative exopolysaccharide polymerization protein
2089	 63.67	0	2383899..2385734	-	611	146339264	-	BRADO2235	-	putative carbamoyltransferase family protein
2090	 61.36	-1	2385744..2385875	-	43	146339265	-	BRADO2236	-	putative signal peptide
2091	 63.38	0	2385926..2386351	-	141	146339266	-	BRADO2237	-	hypothetical protein
2092	 62.92	0	2386357..2387478	-	373	146339267	-	BRADO2238	-	hypothetical protein
2093	 68.67	0	2388884..2389783	-	299	146339268	-	BRADO2242	-	putative inosose dehydratase (2-keto-myo-inositol dehydratase)
2094	 68.68	0	2389799..2391637	-	612	146339269	-	BRADO2243	-	putative malonic semialdehyde oxidative decarboxylase
2095	 67.17	0	2391869..2392870	+	333	146339270	idhA	BRADO2244	-	inositol 2-dehydrogenase
2096	 62.55	0	2393246..2393488	-	80	146339271	-	BRADO2245	-	integrase catalytic subunit
2097	 64.19	0	2394066..2397017	+	983	146339272	-	BRADO2247	-	putative oxidoreductase
2098	 62.48	0	2397054..2398055	+	333	146339273	-	BRADO2248	-	putative beta-lactamase
2099	 65.16	0	2398307..2399368	+	353	146339274	-	BRADO2249	-	hypothetical protein
2100	 64.92	0	2399353..2401695	+	780	146339275	-	BRADO2250	-	hypothetical protein
2101	 67.70	0	2401685..2402653	+	322	146339276	-	BRADO2251	-	putative signal peptide
2102	 63.08	0	2402674..2403789	-	371	146339277	-	BRADO2252	-	AraC family transcriptional regulator
2103	 64.42	0	2404292..2405227	+	311	146339278	-	BRADO2254	-	putative transcription regulator (AraC-type)
2104	 62.52	0	2405489..2405995	+	168	146339279	-	BRADO2255	-	hypothetical protein
2105	 66.18	0	2406120..2406941	+	273	146339280	-	BRADO2256	-	putative cytochrome c
2106	 66.43	0	2406962..2408209	+	415	146339281	-	BRADO2257	-	putative cytochrome c
2107	 68.93	0	2408219..2408395	+	58	146339282	-	BRADO2258	-	hypothetical protein
2108	 66.49	0	2408392..2408955	+	187	146339283	-	BRADO2259	-	putative cytochrome c oxidase subunit II
2109	 64.58	0	2408942..2410567	+	541	146339284	-	BRADO2260	-	putative cytochrome-c oxidase subunit I
2110	 67.77	0	2410564..2411379	+	271	146339285	-	BRADO2261	-	putative cytochrome c; putative signal peptide
2111	 54.10	-2	2411450..2411632	+	60	146339286	-	BRADO2262	-	transposase
2112	 67.62	0	2411717..2412664	-	315	146339287	-	BRADO2263	-	LysR family transcriptional regulator
2113	 67.16	0	2412812..2413627	+	271	146339288	-	BRADO2264	-	putative catechol 1,2-dioxygenase
2114	 69.09	0	2413624..2414694	+	356	146339289	-	BRADO2265	-	maleylacetate reductase
2115	 64.56	0	2414736..2416016	+	426	146339290	-	BRADO2266	-	putative ABC transporter substrate-binding protein
2116	 67.21	0	2416020..2416760	+	246	146339291	-	BRADO2267	-	putative branched-chain amino acid transport ATP-binding protein
2117	 67.23	0	2416760..2417467	+	235	146339292	livF	BRADO2268	-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein
2118	 66.44	0	2417464..2418327	+	287	146339293	-	BRADO2269	-	putative ABC transporter permease protein
2119	 67.04	0	2418339..2419400	+	353	146339294	-	BRADO2270	-	putative ABC transporter permease protein
2120	 65.64	0	2419429..2421183	+	584	146339295	tfdB	BRADO2271	-	2,4-dichlorophenol 6-monooxygenase (2, 4-dichlorophenol hydroxylase)
2121	 62.79	0	2421203..2422078	+	291	146339296	-	BRADO2272	-	putative catechol 1,2-dioxygenase
2122	 64.52	0	2422311..2423195	-	294	146339297	cbbR	BRADO2273	-	RuBisCO operon transcriptional regulator
2123	 63.19	0	2423346..2424785	+	479	146339298	rbcL	BRADO2274	-	ribulose bisophosphate carboxylase
2124	 60.82	-1	2424857..2425198	+	113	146339299	cbbS	BRADO2275	-	ribulose bisphosphate carboxylase small chain (RuBisCO small subunit)
2125	 69.63	+1	2425458..2426909	+	483	146339300	-	BRADO2276	-	putative carboxysome structural peptide CsoS2
2126	 69.41	+1	2426906..2428438	+	510	146339301	CsoS3	BRADO2277	-	carboxysome structural peptide
2127	 66.32	0	2428435..2428725	+	96	146339302	-	BRADO2278	-	carboxysome peptide A
2128	 65.13	0	2428715..2428975	+	86	146339303	-	BRADO2279	-	carboxysome peptide B
2129	 72.82	+2	2429060..2429368	+	102	146339304	csoS1C	BRADO2280	-	major carboxysome shell protein 1C (carbon dioxide concentrating mechanism protein)
2130	 70.03	+1	2429484..2429780	+	98	146339305	csoS1A	BRADO2281	-	major carboxysome shell protein 1A (carbon dioxide concentrating mechanism protein)
2131	 68.75	0	2429850..2430089	+	79	146339306	-	BRADO2282	-	hypothetical protein
2132	 69.66	+1	2430113..2430982	+	289	146339307	-	BRADO2283	-	hypothetical protein
2133	 64.70	0	2430998..2432626	+	542	146339308	-	BRADO2284	-	putative NADH dehydrogenase (NADH quinone oxidoreductase)(nuoL3-like)
2134	 66.43	0	2432632..2435157	+	841	146339309	-	BRADO2285	-	hypothetical protein
2135	 66.21	0	2435181..2438456	-	1091	146339310	-	BRADO2286	-	putative transcription repair coupling factor
2136	 60.27	-1	2438649..2439023	-	124	146339311	-	BRADO2287	-	putative response regulator receiver (CheY-like protein)
2137	 62.08	-1	2439227..2439466	+	79	146339312	-	BRADO2288	-	putative chemotaxis methylesterase CheB
2138	 65.56	0	2439542..2439994	+	150	146339313	-	BRADO2289	-	hypothetical protein
2139	 64.97	0	2440278..2443454	+	1058	146339314	-	BRADO2290	-	putative chemotaxis protein methyltransferase
2140	 65.77	0	2443541..2444212	+	223	146339315	-	BRADO2291	-	CRP/FNR family transcriptional regulator
2141	 66.67	0	2444470..2444823	-	117	146339316	-	BRADO2294	-	hypothetical protein
2142	 73.04	+2	2444886..2445089	-	67	146339317	-	BRADO2295	-	hypothetical protein
2143	 63.95	0	2445748..2446887	+	379	146339318	-	BRADO2297	-	putative uncharacterized iron-regulated membrane protein
2144	 64.02	0	2446938..2447126	+	62	146339319	-	BRADO2298	-	hypothetical protein
2145	 65.02	0	2447661..2449970	+	769	146339320	-	BRADO2299	-	putative ferric siderophore receptor protein precursor; putative signal peptide
2146	 67.31	0	2450108..2450419	+	103	146339321	-	BRADO2300	-	hypothetical protein
2147	 64.24	0	2450843..2452162	+	439	146339322	dctA	BRADO2301	-	C4-dicarboxylate transport protein
2148	 66.83	0	2452418..2453680	+	420	146339323	ndh	BRADO2302	-	respiratory NADH dehydrogenase 2; cupric reductase
2149	 69.46	+1	2453787..2455649	+	620	146339324	-	BRADO2303	-	two-component C4-dicarboxylate transport system, sensor protein
2150	 67.84	0	2455662..2457020	+	452	146339325	dctD	BRADO2304	-	C4-dicarboxylate transport transcriptional regulatory protein (response regulator in two-component reguatory system).
2151	 70.46	+1	2457079..2457315	+	78	146339326	-	BRADO2305	-	hypothetical protein
2152	 63.82	0	2457336..2457686	-	116	146339327	-	BRADO2306	-	hypothetical protein
2153	 64.42	0	2458153..2459133	+	326	146339328	-	BRADO2307	-	putative ABC transporter, substrate binding protein
2154	 68.19	0	2459159..2460865	+	568	161353769	ilvD	BRADO2308	-	dihydroxy-acid dehydratase
2155	 66.78	0	2461137..2461982	+	281	146339330	-	BRADO2309	-	putative ABC transporter, ATP-binding protein
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.