IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
161	 66.76	0	180504..181550	+	348	146337336	-	BRADO0168	-	glycosyl transferase family protein
162	 64.67	0	181547..182146	+	199	146337337	-	BRADO0169	-	methyl transferase
163	 67.13	0	182147..183664	-	505	146337338	-	BRADO0170	-	hypothetical protein
164	 66.99	0	183959..184579	-	206	146337339	grpE	BRADO0171	-	protein grpE (HSP-70 cofactor)
165	 68.69	0	184710..185798	-	362	146337340	hrcA	BRADO0172	-	heat-inducible transcription repressor
166	 69.33	+1	185987..186700	+	237	146337341	rph	BRADO0173	-	ribonuclease PH
167	 72.09	+1	186733..187341	+	202	146337342	-	BRADO0174	-	putative deoxyribonucleotide triphosphate pyrophosphatase
168	 67.62	0	187328..188485	+	385	146337343	-	BRADO0175	-	coproporphyrinogen III oxidase
169	 70.32	+1	188799..190058	-	419	146337344	-	BRADO0177	-	hypothetical protein
170	 71.17	+1	190381..191268	+	295	146337345	-	BRADO0178	-	putative methyltransferase
171	 69.95	+1	191255..191680	+	141	146337346	-	BRADO0179	-	hypothetical protein
172	 66.35	0	191714..192655	+	313	146337347	gshB	BRADO0180	-	glutathione synthetase
173	 63.11	0	193090..193905	+	271	146337348	-	BRADO0181	-	putative exodeoxyribonuclease III (xthA)
174	 66.91	0	194022..194438	-	138	146337349	-	BRADO0182	-	putative cyclic nucleotide binding protein
175	 64.19	0	194532..195218	-	228	146337350	-	BRADO0183	-	putative two-component transcriptional regulator.
176	 70.31	+1	195469..196017	+	182	146337351	-	BRADO0184	-	putative signal peptide
177	 68.19	0	196040..196825	+	261	146337352	-	BRADO0185	-	putative hydratase/decarboxylase
178	 68.13	0	196868..197551	-	227	146337353	-	BRADO0186	-	putative signal peptide
179	 66.20	0	197664..199361	+	565	146337354	-	BRADO0187	-	hypothetical protein
180	 64.13	0	199382..200368	-	328	146337355	-	BRADO0188	-	GGDEF domain-containing protein
181	 65.18	0	200692..203316	+	874	146337356	leuS	BRADO0189	-	leucyl-tRNA synthetase
182	 66.49	0	203303..203854	+	183	146337357	-	BRADO0190	-	hypothetical protein
183	 68.80	0	203873..204901	+	342	146337358	holA	BRADO0191	-	DNA polymerase III subunit delta
184	 68.10	0	205371..206210	-	279	146337359	parB	BRADO0192	-	chromosome partitioning protein
185	 64.08	0	206429..207280	-	283	146337360	parA	BRADO0193	-	chromosome partitioning protein
186	 61.88	-1	207312..207980	-	222	146337361	gidB	BRADO0194	-	glucose inhibited division protein B; methyltransferase gidB
187	 66.08	0	207993..209867	-	624	146337362	gidA	BRADO0195	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
188	 65.24	0	210093..211427	-	444	146337363	trmE	BRADO0196	-	tRNA modification GTPase TrmE
189	 62.40	-1	211749..213014	-	421	146337364	rho	BRADO0197	-	transcription termination factor Rho
190	 57.68	-2	213257..213679	-	140	146337365	-	BRADO0198	-	hypothetical protein
191	 63.21	0	214094..214933	+	279	146337366	-	BRADO0199	-	hypothetical protein
192	 65.35	0	214944..215552	+	202	146337367	-	BRADO0200	-	putative maf-like protein
193	 68.15	0	215581..216186	+	201	146337368	coaE	BRADO0201	-	dephospho-CoA kinase
194	 64.95	0	216220..216918	+	232	146337369	dnaQ	BRADO0202	-	DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function
195	 64.01	0	216975..217463	-	162	146337370	secB	BRADO0203	-	preprotein translocase subunit SecB
196	 66.10	0	217866..218567	+	233	146337371	-	BRADO0204	-	hypothetical protein
197	 65.68	0	218707..220335	+	542	146337372	-	BRADO0205	-	putative membrane-bound lytic murein transglycosylase
198	 69.10	+1	220348..220923	+	191	146337373	-	BRADO0206	-	putative Smr protein/MutS2 C-terminal
199	 61.85	-1	220927..222048	-	373	146337374	-	BRADO0207	-	hypothetical protein
200	 66.21	0	222266..223570	-	434	146337375	hslU	BRADO0208	-	ATP-dependent protease ATP-binding subunit
201	 64.52	0	223576..224088	-	170	146337376	-	BRADO0209	-	putative aminoglycoside N(6')-acetyltransferase (aacA4)
202	 67.82	0	224102..224362	-	86	146337377	-	BRADO0210	-	hypothetical protein
203	 67.20	0	224366..224926	-	186	146337378	hslV	BRADO0211	-	ATP-dependent protease peptidase subunit
204	 63.97	0	225121..225714	+	197	146337379	hisB	BRADO0212	-	imidazoleglycerol-phosphate dehydratase
205	 67.24	0	225755..226279	+	174	146337380	-	BRADO0213	-	hypothetical protein
206	 64.52	0	226276..226926	+	216	146337381	hisH	BRADO0214	-	imidazole glycerol phosphate synthase subunit HisH
207	 66.26	0	226985..227719	+	244	146337382	hisA	BRADO0215	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
208	 66.80	0	227731..228507	+	258	146337383	hisF	BRADO0216	-	imidazole glycerol phosphate synthase subunit HisF
209	 63.58	0	228589..228912	+	107	146337384	hisE	BRADO0217	-	phosphoribosyl-ATP pyrophosphatase
210	 64.16	0	228946..229902	+	318	146337385	coaA	BRADO0218	-	pantothenate kinase
211	 68.52	0	230205..232469	-	754	146337386	-	BRADO0219	-	sensor histidine kinase
212	 67.07	0	232607..233101	-	164	146337387	-	BRADO0220	-	putative signal peptide
213	 70.70	+1	233191..234729	-	512	146337388	-	BRADO0221	-	transcriptional regulator
214	 70.43	+1	234956..236017	+	353	146337389	-	BRADO0222	-	putative signal peptide
215	 66.02	0	236042..236809	-	255	146337390	-	BRADO0223	-	putative signal peptide
216	 68.49	0	236989..239454	-	821	146337391	ftsK	BRADO0224	-	DNA translocase
217	 68.72	0	239466..240680	-	404	146337392	-	BRADO0225	-	putative aminotransferase (aatC)
218	 64.91	0	241580..244084	+	834	146337393	-	BRADO0226	-	putative outer membrane protein
219	 68.64	0	245029..245787	-	252	146337394	-	BRADO0228	-	putative 3-oxoacyl-[acyl-carrier-protein] reductase 1 (fabG1)
220	 65.29	0	245967..247493	+	508	146337395	-	BRADO0229	-	malonyl-CoA synthase
221	 71.43	+1	247501..247689	-	62	146337396	-	BRADO0230	-	hypothetical protein
222	 61.65	-1	248333..248731	+	132	146337397	sdhC	BRADO0232	-	succinate dehydrogenase cytochrome b556 subunit
223	 63.20	0	248752..249126	+	124	146337398	sdhD	BRADO0233	-	succinate dehydrogenase hydrophobic membrane anchor protein
224	 66.18	0	249130..250968	+	612	146337399	sdhA	BRADO0234	-	succinate dehydrogenase flavoprotein subunit
225	 62.96	0	251018..251800	+	260	146337400	sdhB	BRADO0235	-	succinate dehydrogenase iron-sulfur subunit
226	 67.36	0	251919..254069	+	716	146337401	-	BRADO0236	-	sensor histidine kinase
227	 66.87	0	254109..256085	+	658	146337402	-	BRADO0237	-	putative ABC transporter (fused ATP-binding and permease components)
228	 67.87	0	256182..257009	+	275	146337403	-	BRADO0238	-	putative methyltransferase
229	 62.14	-1	257098..257583	+	161	146337404	-	BRADO0239	-	putative general stress protein 26
230	 72.92	+2	257580..257819	+	79	146337405	-	BRADO0240	-	hypothetical protein
231	 68.93	0	259183..260196	+	337	146337406	-	BRADO0242	-	hypothetical protein
232	 64.59	0	260750..262096	-	448	146337407	argG	BRADO0243	-	argininosuccinate synthase
233	 68.07	0	262196..262978	-	260	146337408	-	BRADO0244	-	putative phosphatase
234	 65.01	0	263018..263500	-	160	146337409	-	BRADO0245	-	hypothetical protein
235	 65.51	0	263654..264865	-	403	146337410	-	BRADO0246	-	putative pyruvate formate lyase activating enzyme 2 (yfgB)
236	 68.62	0	264981..265544	-	187	146337411	-	BRADO0247	-	hypothetical protein
237	 66.05	0	265947..266921	+	324	146337412	-	BRADO0250	-	putative quinone oxidoreductases (NADPH) and Zn-dependent alcohol dehydrogenases
238	 70.27	+1	267422..268447	+	341	146337413	-	BRADO0251	-	hypothetical protein
239	 65.73	0	268594..269769	+	391	146337414	-	BRADO0252	-	putative TRAP-type uncharacterized transport system
240	 66.96	0	269896..270240	-	114	146337415	-	BRADO0253	-	hypothetical protein
241	 67.99	0	270442..270744	-	100	146337416	phhB	BRADO0254	-	pterin-4-alpha-carbinolamine dehydratase
242	 66.44	0	271120..272466	+	448	146337417	-	BRADO0255	-	putative signal peptide
243	 65.59	0	272589..274160	+	523	146337418	-	BRADO0256	-	putative alkaline phosphatase (phoD); putative signal peptide
244	 65.87	0	274182..274556	-	124	146337419	-	BRADO0257	-	putative two-component response regulator
245	 66.14	0	274724..275485	+	253	146337420	-	BRADO0258	-	hypothetical protein
246	 67.36	0	275567..276286	+	239	146337421	-	BRADO0259	-	putative prolipoprotein diacylglyceryltransferase
247	 63.69	0	276267..277679	+	470	146337422	-	BRADO0260	-	putative Fe-S oxidoreductases
248	 64.96	0	277676..277909	+	77	146337423	-	BRADO0261	-	mercuric transport protein (mercury ion transport protein) (fragment)
249	 63.71	0	278131..278367	+	78	146337424	-	BRADO0262	-	hypothetical protein
250	 72.15	+1	278390..278626	+	78	146337425	-	BRADO0263	-	hypothetical protein
251	 68.98	0	278637..279413	+	258	146337426	-	BRADO0264	-	hypothetical protein
252	 65.19	0	279639..281465	+	608	146337427	typA	BRADO0265	-	GTP-binding protein typA/bipA (tyrosine phosphorylated protein A)
253	 69.31	+1	281718..282965	+	415	146337428	-	BRADO0266	-	putative amine oxidase
254	 68.81	0	283115..284002	-	295	146337429	-	BRADO0267	-	LysR family transcriptional regulator
255	 68.82	0	284011..284985	-	324	146337430	-	BRADO0268	-	hypothetical protein
256	 65.94	0	285188..285598	-	136	146337431	-	BRADO0269	-	hypothetical protein
257	 69.38	+1	285610..286938	-	442	146337432	-	BRADO0270	-	hypothetical protein
258	 63.27	0	286949..287419	-	156	146337433	-	BRADO0271	-	hypothetical protein
259	 64.51	0	287995..288504	+	169	146337434	-	BRADO0274	-	putative N-acetyltransferase
260	 64.06	0	288708..289244	+	178	146337435	ppa	BRADO0275	-	inorganic pyrophosphatase
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.