IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1417	 65.22	0	1624323..1624598	-	91	146338592	-	BRADO1519	-	putative periplasmic copper binding protein
1418	 66.82	0	1624664..1625965	-	433	146338593	-	BRADO1520	-	putative multicopper oxidase; putative copper resistance protein A
1419	 71.05	+1	1625993..1627405	-	470	146338594	-	BRADO1521	-	putative Outer membrane efflux protein; putative copper resistance protein B
1420	 74.91	+2	1627414..1627680	-	88	146338595	-	BRADO1522	-	hypothetical protein
1421	 68.35	0	1627750..1628223	-	157	146338596	-	BRADO1523	-	hypothetical protein
1422	 67.64	0	1628625..1629863	+	412	146338597	-	BRADO1524	-	major facilitator superfamily permease
1423	 63.94	0	1630414..1631514	+	366	146338598	-	BRADO1526	-	putative TRAP-type uncharacterized transport system
1424	 67.41	0	1631530..1631934	-	134	146338599	-	BRADO1527	-	hypothetical protein
1425	 68.09	0	1632063..1633256	+	397	146338600	-	BRADO1528	-	putative kynureninase
1426	 64.52	0	1633253..1634092	+	279	146338601	-	BRADO1529	-	tryptophan 2,3-dioxygenase
1427	 68.36	0	1634126..1634953	+	275	146338602	-	BRADO1530	-	putative hydrolase (Serine esterase)
1428	 66.14	0	1635162..1636667	+	501	146338603	amdA	BRADO1531	-	amidase
1429	 63.36	0	1636685..1637500	-	271	146338604	-	BRADO1532	-	2-haloacid dehalogenase
1430	 64.69	0	1637585..1638445	+	286	146338605	-	BRADO1533	-	LysR family transcriptional regulator
1431	 69.74	+1	1638467..1640062	-	531	146338606	-	BRADO1534	-	putative gamma-glutamyltranspeptidase
1432	 60.42	-1	1640202..1640585	-	127	146338607	-	BRADO1535	-	hypothetical protein
1433	 67.28	0	1640745..1643171	-	808	146338608	-	BRADO1536	-	hypothetical protein
1434	 65.14	0	1643353..1644594	-	413	146338609	-	BRADO1537	-	hypothetical protein
1435	 66.73	0	1644649..1646277	-	542	146338610	-	BRADO1538	-	ABC transporter permease/ATP-binding protein
1436	 63.08	0	1646592..1647482	-	296	146338611	-	BRADO1539	-	ABC transporter substrate-binding protein
1437	 65.01	0	1648098..1648943	+	281	146338612	-	BRADO1540	-	ABC transporter permease
1438	 68.45	0	1648940..1650007	+	355	146338613	-	BRADO1541	-	putative ABC transporter ATP-binding protein
1439	 64.92	0	1650038..1651069	+	343	146338614	-	BRADO1542	-	ABC transporter substrate-binding protein
1440	 63.90	0	1651151..1651981	+	276	146338615	-	BRADO1543	-	ABC transporter permease
1441	 64.74	0	1652198..1653805	+	535	146338616	-	BRADO1544	-	amidohydrolase
1442	 69.26	+1	1653811..1654812	+	333	146338617	-	BRADO1545	-	putative cobalamin synthesis protein cobW
1443	 70.40	+1	1655003..1655779	-	258	146338618	-	BRADO1546	-	IclR family transcriptional regulator
1444	 68.37	0	1656002..1657057	+	351	146338619	-	BRADO1547	-	ABC transporter ATP-binding protein
1445	 66.08	0	1657054..1657911	+	285	146338620	-	BRADO1548	-	ABC transporter permease
1446	 65.92	0	1657908..1658711	+	267	146338621	-	BRADO1549	-	ABC transporter permease
1447	 67.35	0	1658716..1659009	+	97	146338622	-	BRADO1550	-	oxydoreductase (2Fe-2S ferredoxin like subunit)
1448	 70.18	+1	1659002..1660396	+	464	146338623	-	BRADO1551	-	oxidoreductase (pyridine nucleotide-disulphide subunit)
1449	 69.19	+1	1660380..1661528	+	382	146338624	-	BRADO1552	-	oxidoreductase
1450	 63.51	0	1661541..1662587	+	348	146338625	-	BRADO1553	-	ABC transporter, perisplasmic binding protein
1451	 64.69	0	1662896..1663603	-	235	146338626	-	BRADO1554	-	hypothetical protein
1452	 68.95	0	1663786..1665141	+	451	146338627	-	BRADO1555	-	transcriptional regulator
1453	 66.21	0	1665129..1666433	-	434	146338628	-	BRADO1556	-	putative metallo-hydrolase
1454	 64.94	0	1666564..1668477	-	637	146338629	-	BRADO1557	-	hypothetical protein
1455	 65.92	0	1668499..1669698	-	399	146338630	-	BRADO1558	-	alpha-beta hydrolase family esterase
1456	 64.91	0	1669765..1670334	-	189	146338631	-	BRADO1559	-	putative signal peptide
1457	 65.32	0	1670445..1671113	-	222	146338632	-	BRADO1560	-	putative aldolase
1458	 66.86	0	1671424..1672962	-	512	146338633	garD	BRADO1562	-	(D)-galactarate dehydrogenase
1459	 66.40	0	1673187..1674674	-	495	146338634	-	BRADO1563	-	aldehyde dehydrogenase; NAD-linked
1460	 67.04	0	1674693..1676048	-	451	146338635	gudD	BRADO1564	-	(D)-glucarate dehydratase 1
1461	 65.19	0	1676340..1677284	-	314	146338636	kdgD	BRADO1565	-	5-dehydro-4-deoxyglucarate dehydratase
1462	 69.32	+1	1677420..1678322	-	300	146338637	-	BRADO1566	-	LysR family transcriptional regulator
1463	 65.34	0	1679439..1680794	-	451	146338638	gudP	BRADO1568	-	major facilitator superfamily D-glucarate permease
1464	 67.29	0	1681143..1682267	+	374	146338639	aphA	BRADO1570	-	acetylpolyamine aminohydrolase
1465	 66.11	0	1682346..1684127	+	593	146338640	mcpa	BRADO1571	-	methyl-accepting chemotaxis protein
1466	 67.72	0	1684184..1684468	+	94	146338641	-	BRADO1572	-	hypothetical protein
1467	 67.24	0	1684465..1686900	-	811	146338642	pps	BRADO1573	-	phosphoenolpyruvate synthase
1468	 65.56	0	1687007..1688185	+	392	146338643	-	BRADO1574	-	putative ABC transporter-like
1469	 70.18	+1	1688145..1689083	-	312	146338644	-	BRADO1575	-	carbohydrate kinase pfkB family; 6-phosphofructokinase
1470	 68.60	0	1689087..1690067	-	326	146338645	glk	BRADO1576	-	glucokinase (glucose kinase)
1471	 67.39	0	1690064..1691455	-	463	146338646	-	BRADO1577	-	putative beta-glucosidase
1472	 66.46	0	1691800..1692750	+	316	146338647	-	BRADO1578	-	putative oligopeptide ABC transporter (permease protein)
1473	 68.74	0	1692759..1693625	+	288	146338648	-	BRADO1579	-	putative oligopeptide ABC transporter (permease protein)
1474	 68.45	0	1693622..1694632	+	336	146338649	-	BRADO1580	-	putative oligopeptide ABC transporter (ATP binding protein)
1475	 68.57	0	1694629..1695681	+	350	146338650	-	BRADO1581	-	putative oligopeptide ABC transporter (ATP binding protein)
1476	 64.34	0	1695715..1697220	+	501	146338651	-	BRADO1582	-	putative oligopeptide ABC transporter (substrate-binding protein)
1477	 61.73	-1	1697494..1697655	-	53	146338652	-	BRADO1583	-	hypothetical protein
1478	 65.26	0	1697886..1698809	+	307	146338653	-	BRADO1584	-	thioredoxin reductase
1479	 69.05	0	1698885..1699052	+	55	146338654	-	BRADO1585	-	hypothetical protein
1480	 66.79	0	1699060..1699902	-	280	146338655	-	BRADO1586	-	putative oligopeptide ABC transporter (permease protein)
1481	 67.10	0	1699914..1700846	-	310	146338656	-	BRADO1587	-	oligopeptide ABC transporter permease
1482	 68.68	0	1700843..1701835	-	330	146338657	-	BRADO1588	-	putative oligopeptide ABC transporter (ATP binding protein)
1483	 68.82	0	1701832..1702806	-	324	146338658	-	BRADO1589	-	putative oligopeptide ABC transporter (ATP binding protein)
1484	 65.38	0	1702811..1704448	-	545	146338659	-	BRADO1590	-	putative oligopeptide ABC transporter (substrate-binding protein)
1485	 65.94	0	1704490..1705311	-	273	146338660	-	BRADO1591	-	putative xylose isomerase
1486	 65.32	0	1705658..1706176	+	172	146338661	-	BRADO1593	-	hypothetical protein
1487	 66.36	0	1706203..1706847	-	214	146338662	-	BRADO1594	-	hypothetical protein
1488	 71.02	+1	1706880..1708097	-	405	146338663	-	BRADO1595	-	putative DNA-binding protein
1489	 67.78	0	1708407..1708943	+	178	146338664	-	BRADO1596	-	hypothetical protein
1490	 65.89	0	1708990..1709247	+	85	146338665	-	BRADO1597	-	putative signal peptide
1491	 66.54	0	1709544..1710329	-	261	146338666	-	BRADO1598	-	ABC transporter ATP-binding protein
1492	 64.22	0	1710326..1711102	-	258	146338667	-	BRADO1599	-	ABC transporter permease
1493	 62.01	-1	1711330..1712274	-	314	146338668	-	BRADO1600	-	ABC transporter substrate-binding protein
1494	 66.67	0	1712408..1713139	-	243	146338669	hutC	BRADO1601	-	histidine utilization repressor
1495	 67.62	0	1713136..1714494	-	452	146338670	-	BRADO1602	-	N-formimino-L-glutamate deiminase
1496	 67.41	0	1714583..1715797	+	404	146338671	hutI	BRADO1603	-	imidazolonepropionase
1497	 68.09	0	1715794..1717341	+	515	146338672	hutH	BRADO1604	-	histidine ammonia-lyase
1498	 65.59	0	1717351..1719021	+	556	146338673	hutU	BRADO1605	-	urocanate hydratase
1499	 68.39	0	1719052..1720152	+	366	146338674	bchI	BRADO1606	-	magnesium-chelatase 38 kDa subunit (Mg-protoporphyrin IX chelatase)
1500	 70.98	+1	1720149..1721888	+	579	146338675	bchD	BRADO1607	-	magnesium chelatase subunit D
1501	 65.53	0	1722026..1722991	+	321	146338676	-	BRADO1608	-	putative alpha/beta hydrolase fold
1502	 67.77	0	1723037..1723942	+	301	146338677	-	BRADO1609	-	putative Alpha/beta hydrolase, putative protoporphyrin IX magnesium chelatase bchO-like.
1503	 66.21	0	1723993..1725531	+	512	146338678	crtI	BRADO1610	-	phytoene dehydrogenase (phytoene desaturase)
1504	 70.89	+1	1725528..1726568	+	346	146338679	crtB	BRADO1611	-	phytoene synthase
1505	 69.44	+1	1726591..1726734	+	47	146338680	-	BRADO1612	-	hypothetical protein
1506	 69.50	+1	1727206..1727910	-	234	146338681	crtC	BRADO1613	-	neurosporene and anhydrorhodovibrin hydratase
1507	 69.85	+1	1728066..1729604	-	512	146338682	crtD	BRADO1614	-	hydroxyneurosporene and rhodopin dehydrogenase
1508	 71.03	+1	1729716..1730585	+	289	146338683	crtE	BRADO1615	-	geranylgeranyl pyrophosphate synthetase (GGPP synthetase) (farnesyltranstransferase)
1509	 70.24	+1	1730820..1731965	+	381	146338684	crtF	BRADO1616	-	demethylspheroidene and didehydrorhodopin O-methyltransferase
1510	 68.47	0	1732056..1732997	+	313	146338685	bchC	BRADO1617	-	2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase
1511	 65.38	0	1732994..1734004	+	336	146338686	bchX	BRADO1618	-	bacteriochlorophyllide reductase subunit
1512	 69.82	+1	1734008..1735594	+	528	146338687	bchY	BRADO1619	-	bacteriochlorophyllide reductase subunit
1513	 67.01	0	1735594..1737045	+	483	146338688	bchZ	BRADO1620	-	bacteriochlorophyllide reductase Z subunit
1514	 67.54	0	1737077..1737304	+	75	146338689	-	BRADO1621	-	hypothetical protein
1515	 61.84	-1	1737475..1737702	+	75	146338690	pufB	BRADO1622	-	light harvesting 1 beta subunit
1516	 60.32	-1	1737719..1737907	+	62	146338691	pufA	BRADO1623	-	light harvesting 1 alpha subunit
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.