IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1368	 64.47	0	1568534..1569901	+	455	146338543	-	BRADO1463	-	protein prenyltransferase
1369	 65.13	0	1569961..1571067	-	368	146338544	dinB	BRADO1464	-	DNA polymerase IV
1370	 65.45	0	1571335..1572240	+	301	146338545	-	BRADO1465	-	ribonuclease Z
1371	 65.65	0	1572517..1574394	+	625	146338546	trkD	BRADO1466	-	KUP family potassium transport system low affinity
1372	 58.56	-2	1574506..1574937	+	143	146338547	-	BRADO1467	-	putative signal peptide
1373	 67.95	0	1575321..1576640	-	439	146338548	-	BRADO1468	-	hypothetical protein
1374	 70.19	+1	1576731..1577354	-	207	146338549	-	BRADO1469	-	hypothetical protein
1375	 68.75	0	1577604..1578035	+	143	146338550	-	BRADO1470	-	hypothetical protein
1376	 71.80	+1	1578039..1578875	-	278	146338551	cysQ	BRADO1471	-	CysQ protein
1377	 65.91	0	1579121..1579783	+	220	146338552	-	BRADO1472	-	putative Signal transduction histidine kinase
1378	 66.99	0	1580019..1582817	+	932	146338553	cheA	BRADO1473	-	chemotaxis protein cheA
1379	 66.67	0	1582844..1583314	+	156	146338554	cheW	BRADO1474	-	chemotaxis protein cheW
1380	 62.02	-1	1583384..1583749	+	121	146338555	cheY	BRADO1475	-	chemotaxis protein cheY
1381	 68.09	0	1583825..1585021	+	398	146338556	cheB	BRADO1476	-	chemotaxis-specific methylesterase
1382	 63.56	0	1585018..1585887	+	289	146338557	cheR	BRADO1477	-	chemotaxis protein methyltransferase
1383	 64.05	0	1586062..1587819	+	585	146338558	kaiC	BRADO1478	-	circadian clock protein KaiC
1384	 61.62	-1	1587816..1588112	+	98	146338559	kaiB	BRADO1479	-	circadian clock protein
1385	 68.35	0	1588124..1589611	+	495	146338560	-	BRADO1480	-	signal transduction histidine kinase
1386	 69.80	+1	1589612..1589962	-	116	146338561	-	BRADO1481	-	putative response regulator receiver (CheY-like protein)
1387	 65.39	0	1590105..1591280	-	391	146338562	-	BRADO1482	-	putative glutathionylspermidine synthase family protein
1388	 69.92	+1	1591287..1591532	-	81	146338563	-	BRADO1484	-	hypothetical protein
1389	 72.98	+2	1591651..1592046	-	131	146338564	-	BRADO1485	-	hypothetical protein
1390	 63.95	0	1592049..1592453	-	134	146338565	-	BRADO1486	-	hypothetical protein
1391	 69.23	+1	1592523..1593263	-	246	146338566	-	BRADO1487	-	GntR family transcriptional regulator
1392	 63.97	0	1593456..1594457	+	333	146338567	-	BRADO1488	-	ABC transporter substrate-binding protein
1393	 67.78	0	1594459..1595268	+	269	146338568	-	BRADO1489	-	ABC transporter permease
1394	 65.90	0	1595271..1596050	+	259	146338569	-	BRADO1490	-	ABC transporter ATP-binding protein
1395	 65.02	0	1596367..1597095	+	242	146338570	-	BRADO1491	-	putative Asp/Glu/Hydantoin racemase
1396	 65.53	0	1597121..1598524	+	467	146338571	-	BRADO1492	-	dihydropyrimidinase
1397	 64.21	0	1598817..1600934	+	705	146338572	-	BRADO1493	-	putative nuclease
1398	 62.76	0	1601236..1601721	-	161	146338573	-	BRADO1494	-	hypothetical protein
1399	 66.87	0	1602150..1602632	-	160	146338574	-	BRADO1495	-	putative cytochrome c
1400	 60.68	-1	1603833..1604534	-	233	146338575	ctrA	BRADO1497	-	two-component cell cycle transcriptional regulator ctrA
1401	 67.42	0	1604953..1606278	+	441	146338576	fliI	BRADO1498	-	flagellum-specific ATP synthase
1402	 65.00	0	1606388..1606807	+	139	146338577	-	BRADO1499	-	putative flagelar FliJ protein
1403	 65.21	0	1606958..1607506	+	182	146338578	-	BRADO1500	-	RNA polymerase ECF-type sigma factor
1404	 68.09	0	1607564..1608688	+	374	146338579	-	BRADO1501	-	hypothetical protein
1405	 63.68	0	1608822..1609022	-	66	146338580	-	BRADO1502	-	putative signal peptide
1406	 66.76	0	1609392..1611443	-	683	146338581	flhA	BRADO1503	-	flagellar biosynthesis protein FlhA
1407	 67.75	0	1612721..1613647	+	308	146338582	-	BRADO1504	-	putative para-nitrobenzyl esterase
1408	 59.31	-1	1613855..1614085	-	76	146338583	-	BRADO1505	-	hypothetical protein
1409	 65.07	0	1614528..1614902	+	124	146338584	-	BRADO1506	-	hypothetical protein
1410	 67.88	0	1615206..1617431	-	741	146338585	-	BRADO1509	-	O-linked N-acetylglucosamine transferase
1411	 62.85	0	1618372..1618869	+	165	146338586	-	BRADO1511	-	putative acetyltransferase protein
1412	 60.55	-1	1618951..1619277	-	108	146338587	-	BRADO1512	-	hypothetical protein
1413	 59.90	-1	1619600..1620190	+	196	146338588	-	BRADO1514	-	putative shikimate kinase
1414	 59.95	-1	1620337..1621155	+	272	146338589	-	BRADO1515	-	hypothetical protein
1415	 68.16	0	1621340..1622077	-	245	146338590	-	BRADO1517	-	hypothetical protein
1416	 69.03	0	1622222..1624297	+	691	146338591	-	BRADO1518	-	putative methyl-accepting chemotaxis protein
1417	 65.22	0	1624323..1624598	-	91	146338592	-	BRADO1519	-	putative periplasmic copper binding protein
1418	 66.82	0	1624664..1625965	-	433	146338593	-	BRADO1520	-	putative multicopper oxidase; putative copper resistance protein A
1419	 71.05	+1	1625993..1627405	-	470	146338594	-	BRADO1521	-	putative Outer membrane efflux protein; putative copper resistance protein B
1420	 74.91	+2	1627414..1627680	-	88	146338595	-	BRADO1522	-	hypothetical protein
1421	 68.35	0	1627750..1628223	-	157	146338596	-	BRADO1523	-	hypothetical protein
1422	 67.64	0	1628625..1629863	+	412	146338597	-	BRADO1524	-	major facilitator superfamily permease
1423	 63.94	0	1630414..1631514	+	366	146338598	-	BRADO1526	-	putative TRAP-type uncharacterized transport system
1424	 67.41	0	1631530..1631934	-	134	146338599	-	BRADO1527	-	hypothetical protein
1425	 68.09	0	1632063..1633256	+	397	146338600	-	BRADO1528	-	putative kynureninase
1426	 64.52	0	1633253..1634092	+	279	146338601	-	BRADO1529	-	tryptophan 2,3-dioxygenase
1427	 68.36	0	1634126..1634953	+	275	146338602	-	BRADO1530	-	putative hydrolase (Serine esterase)
1428	 66.14	0	1635162..1636667	+	501	146338603	amdA	BRADO1531	-	amidase
1429	 63.36	0	1636685..1637500	-	271	146338604	-	BRADO1532	-	2-haloacid dehalogenase
1430	 64.69	0	1637585..1638445	+	286	146338605	-	BRADO1533	-	LysR family transcriptional regulator
1431	 69.74	+1	1638467..1640062	-	531	146338606	-	BRADO1534	-	putative gamma-glutamyltranspeptidase
1432	 60.42	-1	1640202..1640585	-	127	146338607	-	BRADO1535	-	hypothetical protein
1433	 67.28	0	1640745..1643171	-	808	146338608	-	BRADO1536	-	hypothetical protein
1434	 65.14	0	1643353..1644594	-	413	146338609	-	BRADO1537	-	hypothetical protein
1435	 66.73	0	1644649..1646277	-	542	146338610	-	BRADO1538	-	ABC transporter permease/ATP-binding protein
1436	 63.08	0	1646592..1647482	-	296	146338611	-	BRADO1539	-	ABC transporter substrate-binding protein
1437	 65.01	0	1648098..1648943	+	281	146338612	-	BRADO1540	-	ABC transporter permease
1438	 68.45	0	1648940..1650007	+	355	146338613	-	BRADO1541	-	putative ABC transporter ATP-binding protein
1439	 64.92	0	1650038..1651069	+	343	146338614	-	BRADO1542	-	ABC transporter substrate-binding protein
1440	 63.90	0	1651151..1651981	+	276	146338615	-	BRADO1543	-	ABC transporter permease
1441	 64.74	0	1652198..1653805	+	535	146338616	-	BRADO1544	-	amidohydrolase
1442	 69.26	+1	1653811..1654812	+	333	146338617	-	BRADO1545	-	putative cobalamin synthesis protein cobW
1443	 70.40	+1	1655003..1655779	-	258	146338618	-	BRADO1546	-	IclR family transcriptional regulator
1444	 68.37	0	1656002..1657057	+	351	146338619	-	BRADO1547	-	ABC transporter ATP-binding protein
1445	 66.08	0	1657054..1657911	+	285	146338620	-	BRADO1548	-	ABC transporter permease
1446	 65.92	0	1657908..1658711	+	267	146338621	-	BRADO1549	-	ABC transporter permease
1447	 67.35	0	1658716..1659009	+	97	146338622	-	BRADO1550	-	oxydoreductase (2Fe-2S ferredoxin like subunit)
1448	 70.18	+1	1659002..1660396	+	464	146338623	-	BRADO1551	-	oxidoreductase (pyridine nucleotide-disulphide subunit)
1449	 69.19	+1	1660380..1661528	+	382	146338624	-	BRADO1552	-	oxidoreductase
1450	 63.51	0	1661541..1662587	+	348	146338625	-	BRADO1553	-	ABC transporter, perisplasmic binding protein
1451	 64.69	0	1662896..1663603	-	235	146338626	-	BRADO1554	-	hypothetical protein
1452	 68.95	0	1663786..1665141	+	451	146338627	-	BRADO1555	-	transcriptional regulator
1453	 66.21	0	1665129..1666433	-	434	146338628	-	BRADO1556	-	putative metallo-hydrolase
1454	 64.94	0	1666564..1668477	-	637	146338629	-	BRADO1557	-	hypothetical protein
1455	 65.92	0	1668499..1669698	-	399	146338630	-	BRADO1558	-	alpha-beta hydrolase family esterase
1456	 64.91	0	1669765..1670334	-	189	146338631	-	BRADO1559	-	putative signal peptide
1457	 65.32	0	1670445..1671113	-	222	146338632	-	BRADO1560	-	putative aldolase
1458	 66.86	0	1671424..1672962	-	512	146338633	garD	BRADO1562	-	(D)-galactarate dehydrogenase
1459	 66.40	0	1673187..1674674	-	495	146338634	-	BRADO1563	-	aldehyde dehydrogenase; NAD-linked
1460	 67.04	0	1674693..1676048	-	451	146338635	gudD	BRADO1564	-	(D)-glucarate dehydratase 1
1461	 65.19	0	1676340..1677284	-	314	146338636	kdgD	BRADO1565	-	5-dehydro-4-deoxyglucarate dehydratase
1462	 69.32	+1	1677420..1678322	-	300	146338637	-	BRADO1566	-	LysR family transcriptional regulator
1463	 65.34	0	1679439..1680794	-	451	146338638	gudP	BRADO1568	-	major facilitator superfamily D-glucarate permease
1464	 67.29	0	1681143..1682267	+	374	146338639	aphA	BRADO1570	-	acetylpolyamine aminohydrolase
1465	 66.11	0	1682346..1684127	+	593	146338640	mcpa	BRADO1571	-	methyl-accepting chemotaxis protein
1466	 67.72	0	1684184..1684468	+	94	146338641	-	BRADO1572	-	hypothetical protein
1467	 67.24	0	1684465..1686900	-	811	146338642	pps	BRADO1573	-	phosphoenolpyruvate synthase
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.