IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1318	 63.71	0	1510275..1511288	+	337	146338493	-	BRADO1411	-	putative periplasmic substrate-binding subunit (ABC transporter)
1319	 69.62	+1	1511295..1512647	-	450	146338494	-	BRADO1412	-	putative two-component sensor histidine kinase
1320	 67.23	0	1512651..1513358	-	235	146338495	ompR	BRADO1413	-	OmpR family two-component response regulator
1321	 75.56	+2	1513568..1513837	+	89	146338496	-	BRADO1414	-	hypothetical protein
1322	 63.02	0	1513958..1514587	+	209	146338497	-	BRADO1415	-	putative signal peptide
1323	 70.11	+1	1514603..1515502	+	299	146338498	-	BRADO1416	-	hypothetical protein
1324	 69.68	+1	1515519..1516016	+	165	146338499	-	BRADO1417	-	hypothetical protein
1325	 70.64	+1	1516266..1517246	-	326	146338500	-	BRADO1418	-	hypothetical protein
1326	 65.27	0	1517335..1517979	+	214	146338501	gst1	BRADO1419	-	glutathione S-transferase
1327	 67.99	0	1518049..1520007	-	652	146338502	-	BRADO1420	-	aminopeptidase
1328	 65.73	0	1520058..1520486	-	142	146338503	-	BRADO1421	-	AsnC/Lrp family transcriptional regulator
1329	 64.13	0	1520604..1520918	+	104	146338504	-	BRADO1422	-	hypothetical protein
1330	 61.32	-1	1520978..1521295	+	105	146338505	-	BRADO1423	-	hypothetical protein
1331	 65.67	0	1521314..1521613	-	99	146338506	-	BRADO1424	-	hypothetical protein
1332	 64.88	0	1521946..1522785	+	279	146338507	-	BRADO1425	-	putative signal peptide
1333	 68.53	0	1523145..1525127	+	660	146338508	-	BRADO1426	-	hypothetical protein
1334	 67.58	0	1525317..1526852	+	511	146338509	-	BRADO1427	-	putative signal peptide
1335	 66.27	0	1526857..1528131	-	424	146338510	-	BRADO1428	-	Acyl-coenzyme A transferase
1336	 57.71	-2	1528318..1528518	-	66	146338511	cspA	BRADO1429	-	cold shock protein, DNA binding
1337	 66.03	0	1528752..1530485	-	577	146338512	cyaA	BRADO1430	-	ferredoxin:adenylate/guanylate cyclase
1338	 66.34	0	1530683..1532215	+	510	146338513	-	BRADO1431	-	putative glycosyl transferase
1339	 69.96	+1	1532216..1533247	-	343	146338514	-	BRADO1432	-	hypothetical protein
1340	 68.48	0	1533244..1534728	-	494	146338515	-	BRADO1433	-	hypothetical protein
1341	 62.36	-1	1534899..1535594	+	231	146338516	-	BRADO1434	-	hemolysin III
1342	 66.54	0	1535631..1536425	+	264	146338517	-	BRADO1435	-	putative short-chain dehydrogenase/reductase
1343	 66.84	0	1537736..1539472	+	578	146338518	-	BRADO1437	-	hypothetical protein
1344	 72.59	+2	1539998..1541719	-	573	146338519	-	BRADO1438	-	putative signal peptide
1345	 68.39	0	1542049..1543731	-	560	146338520	mdlC	BRADO1439	-	benzoylformate decarboxylase
1346	 67.84	0	1543775..1544629	-	284	146338521	-	BRADO1440	-	hypothetical protein
1347	 67.65	0	1544626..1545738	-	370	146338522	-	BRADO1441	-	formyl-coenzyme A transferase NAD(P)-binding
1348	 64.35	0	1545963..1547129	-	388	146338523	-	BRADO1442	-	acyl-CoA dehydrogenase
1349	 69.00	0	1547288..1547887	-	199	146338524	-	BRADO1443	-	putative sulfopyruvate decarboxylase beta subunit
1350	 65.75	0	1547869..1548414	-	181	146338525	-	BRADO1444	-	putative sulfopyruvate decarboxylase alpha subunit
1351	 64.75	0	1548737..1550041	-	434	146338526	-	BRADO1445	-	cytochrome P-450
1352	 64.89	0	1550302..1551597	-	431	146338527	-	BRADO1446	-	cytochrome P-450
1353	 65.56	0	1551824..1552996	+	390	146338528	ivd2	BRADO1447	-	isovaleryl-CoA dehydrogenase
1354	 63.62	0	1553294..1554343	+	349	146338529	-	BRADO1448	-	hypothetical protein
1355	 68.17	0	1554318..1555451	+	377	146338530	-	BRADO1449	-	putative metalloendopeptidase
1356	 65.60	0	1555677..1556426	-	249	146338531	-	BRADO1450	-	hypothetical protein
1357	 67.60	0	1556548..1557081	-	177	146338532	-	BRADO1451	-	hypothetical protein
1358	 68.34	0	1557395..1558945	+	516	146338533	-	BRADO1452	-	hypothetical protein
1359	 63.29	0	1559093..1559596	+	167	146338534	-	BRADO1453	-	hypothetical protein
1360	 62.19	-1	1559837..1560037	-	66	146338535	-	BRADO1454	-	putative signal peptide
1361	 61.83	-1	1560408..1560779	-	123	146338536	-	BRADO1456	-	cytochrome c
1362	 65.04	0	1560973..1562139	+	388	146338537	-	BRADO1457	-	hypothetical protein
1363	 64.22	0	1562136..1563485	+	449	146338538	-	BRADO1458	-	two-component hybrid sensor and regulator
1364	 63.61	0	1563439..1564320	-	293	146338539	-	BRADO1459	-	two-component LuxR family transcriptional regulator (modular protein)
1365	 65.88	0	1564394..1565155	-	253	146338540	-	BRADO1460	-	two-component LuxR family transcriptional regulator
1366	 65.34	0	1565152..1566357	-	401	146338541	-	BRADO1461	-	Mox; cytochrome c like protein
1367	 64.13	0	1566444..1568135	-	563	146338542	-	BRADO1462	-	quinoprotein ethanol dehydrogenase
1368	 64.47	0	1568534..1569901	+	455	146338543	-	BRADO1463	-	protein prenyltransferase
1369	 65.13	0	1569961..1571067	-	368	146338544	dinB	BRADO1464	-	DNA polymerase IV
1370	 65.45	0	1571335..1572240	+	301	146338545	-	BRADO1465	-	ribonuclease Z
1371	 65.65	0	1572517..1574394	+	625	146338546	trkD	BRADO1466	-	KUP family potassium transport system low affinity
1372	 58.56	-2	1574506..1574937	+	143	146338547	-	BRADO1467	-	putative signal peptide
1373	 67.95	0	1575321..1576640	-	439	146338548	-	BRADO1468	-	hypothetical protein
1374	 70.19	+1	1576731..1577354	-	207	146338549	-	BRADO1469	-	hypothetical protein
1375	 68.75	0	1577604..1578035	+	143	146338550	-	BRADO1470	-	hypothetical protein
1376	 71.80	+1	1578039..1578875	-	278	146338551	cysQ	BRADO1471	-	CysQ protein
1377	 65.91	0	1579121..1579783	+	220	146338552	-	BRADO1472	-	putative Signal transduction histidine kinase
1378	 66.99	0	1580019..1582817	+	932	146338553	cheA	BRADO1473	-	chemotaxis protein cheA
1379	 66.67	0	1582844..1583314	+	156	146338554	cheW	BRADO1474	-	chemotaxis protein cheW
1380	 62.02	-1	1583384..1583749	+	121	146338555	cheY	BRADO1475	-	chemotaxis protein cheY
1381	 68.09	0	1583825..1585021	+	398	146338556	cheB	BRADO1476	-	chemotaxis-specific methylesterase
1382	 63.56	0	1585018..1585887	+	289	146338557	cheR	BRADO1477	-	chemotaxis protein methyltransferase
1383	 64.05	0	1586062..1587819	+	585	146338558	kaiC	BRADO1478	-	circadian clock protein KaiC
1384	 61.62	-1	1587816..1588112	+	98	146338559	kaiB	BRADO1479	-	circadian clock protein
1385	 68.35	0	1588124..1589611	+	495	146338560	-	BRADO1480	-	signal transduction histidine kinase
1386	 69.80	+1	1589612..1589962	-	116	146338561	-	BRADO1481	-	putative response regulator receiver (CheY-like protein)
1387	 65.39	0	1590105..1591280	-	391	146338562	-	BRADO1482	-	putative glutathionylspermidine synthase family protein
1388	 69.92	+1	1591287..1591532	-	81	146338563	-	BRADO1484	-	hypothetical protein
1389	 72.98	+2	1591651..1592046	-	131	146338564	-	BRADO1485	-	hypothetical protein
1390	 63.95	0	1592049..1592453	-	134	146338565	-	BRADO1486	-	hypothetical protein
1391	 69.23	+1	1592523..1593263	-	246	146338566	-	BRADO1487	-	GntR family transcriptional regulator
1392	 63.97	0	1593456..1594457	+	333	146338567	-	BRADO1488	-	ABC transporter substrate-binding protein
1393	 67.78	0	1594459..1595268	+	269	146338568	-	BRADO1489	-	ABC transporter permease
1394	 65.90	0	1595271..1596050	+	259	146338569	-	BRADO1490	-	ABC transporter ATP-binding protein
1395	 65.02	0	1596367..1597095	+	242	146338570	-	BRADO1491	-	putative Asp/Glu/Hydantoin racemase
1396	 65.53	0	1597121..1598524	+	467	146338571	-	BRADO1492	-	dihydropyrimidinase
1397	 64.21	0	1598817..1600934	+	705	146338572	-	BRADO1493	-	putative nuclease
1398	 62.76	0	1601236..1601721	-	161	146338573	-	BRADO1494	-	hypothetical protein
1399	 66.87	0	1602150..1602632	-	160	146338574	-	BRADO1495	-	putative cytochrome c
1400	 60.68	-1	1603833..1604534	-	233	146338575	ctrA	BRADO1497	-	two-component cell cycle transcriptional regulator ctrA
1401	 67.42	0	1604953..1606278	+	441	146338576	fliI	BRADO1498	-	flagellum-specific ATP synthase
1402	 65.00	0	1606388..1606807	+	139	146338577	-	BRADO1499	-	putative flagelar FliJ protein
1403	 65.21	0	1606958..1607506	+	182	146338578	-	BRADO1500	-	RNA polymerase ECF-type sigma factor
1404	 68.09	0	1607564..1608688	+	374	146338579	-	BRADO1501	-	hypothetical protein
1405	 63.68	0	1608822..1609022	-	66	146338580	-	BRADO1502	-	putative signal peptide
1406	 66.76	0	1609392..1611443	-	683	146338581	flhA	BRADO1503	-	flagellar biosynthesis protein FlhA
1407	 67.75	0	1612721..1613647	+	308	146338582	-	BRADO1504	-	putative para-nitrobenzyl esterase
1408	 59.31	-1	1613855..1614085	-	76	146338583	-	BRADO1505	-	hypothetical protein
1409	 65.07	0	1614528..1614902	+	124	146338584	-	BRADO1506	-	hypothetical protein
1410	 67.88	0	1615206..1617431	-	741	146338585	-	BRADO1509	-	O-linked N-acetylglucosamine transferase
1411	 62.85	0	1618372..1618869	+	165	146338586	-	BRADO1511	-	putative acetyltransferase protein
1412	 60.55	-1	1618951..1619277	-	108	146338587	-	BRADO1512	-	hypothetical protein
1413	 59.90	-1	1619600..1620190	+	196	146338588	-	BRADO1514	-	putative shikimate kinase
1414	 59.95	-1	1620337..1621155	+	272	146338589	-	BRADO1515	-	hypothetical protein
1415	 68.16	0	1621340..1622077	-	245	146338590	-	BRADO1517	-	hypothetical protein
1416	 69.03	0	1622222..1624297	+	691	146338591	-	BRADO1518	-	putative methyl-accepting chemotaxis protein
1417	 65.22	0	1624323..1624598	-	91	146338592	-	BRADO1519	-	putative periplasmic copper binding protein
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.