IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1269	 65.86	0	1445594..1447822	+	742	146338444	-	BRADO1360	-	O-linked N-acetylglucosamine transferase
1270	 63.71	0	1448057..1448293	-	78	146338445	-	BRADO1361	-	hypothetical protein
1271	 67.20	0	1448511..1448885	+	124	146338446	-	BRADO1362	-	hypothetical protein
1272	 69.39	+1	1449143..1449436	-	97	146338447	-	BRADO1363	-	hypothetical protein
1273	 69.56	+1	1449603..1450121	-	172	146338448	-	BRADO1364	-	hypothetical protein
1274	 66.30	0	1450583..1451398	+	271	146338449	-	BRADO1365	-	putative transglycolase
1275	 68.45	0	1452144..1452983	-	279	146338450	-	BRADO1366	-	putative short-chain dehydrogenase
1276	 68.40	0	1453132..1453536	+	134	146338451	-	BRADO1367	-	putative two-component response regulator
1277	 55.56	-2	1453709..1453789	-	26	146338452	-	BRADO1368	-	histone H1 (fragment)
1278	 66.51	0	1454143..1455390	+	415	146338453	-	BRADO1369	-	hypothetical protein
1279	 68.94	0	1455461..1456033	+	190	146338454	-	BRADO1370	-	hypothetical protein
1280	 64.89	0	1456134..1457033	-	299	146338455	rpoH	BRADO1371	-	RNA polymerase factor sigma-32
1281	 67.01	0	1457253..1458407	-	384	146338456	rluD	BRADO1372	-	pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
1282	 69.32	+1	1458280..1458618	+	112	146338457	-	BRADO1373	-	hypothetical protein
1283	 50.23	-2	1460106..1462307	+	733	146338458	-	BRADO1375	-	putative site-specific DNA-methyltransferase (adenine-specific)
1284	 52.57	-2	1462313..1464787	+	824	146338459	-	BRADO1376	-	type III restriction enzyme
1285	 67.76	0	1464897..1466081	-	394	146338460	-	BRADO1377	-	cytochrome P450
1286	 69.87	+1	1466420..1466950	-	176	146338461	-	BRADO1378	-	hypothetical protein
1287	 69.42	+1	1467160..1467522	+	120	146338462	-	BRADO1379	-	hypothetical protein
1288	 68.36	0	1467668..1468612	+	314	146338463	-	BRADO1380	-	catalase
1289	 66.73	0	1469339..1470988	+	549	146338464	-	BRADO1381	-	hypothetical protein
1290	 68.93	0	1471146..1473974	+	942	146338465	-	BRADO1382	-	hypothetical protein
1291	 69.37	+1	1473917..1475398	+	493	146338466	-	BRADO1383	-	metallo-dependent phosphatase
1292	 68.30	0	1475480..1476517	-	345	146338467	-	BRADO1384	-	NAD(P)-dependent oxidoreductase (putative inositol 2-dehydrogenase)
1293	 64.61	0	1476514..1476999	-	161	146338468	aroQ2	BRADO1385	-	3-dehydroquinate dehydratase
1294	 70.92	+1	1477231..1478193	+	320	146338469	-	BRADO1386	-	Fis family transcriptional regulator
1295	 63.82	0	1478314..1479858	+	514	146338470	aldB	BRADO1387	-	aldehyde dehydrogenase
1296	 67.01	0	1480157..1481020	-	287	146338471	-	BRADO1388	-	hypothetical protein
1297	 65.97	0	1481133..1483010	-	625	146338472	-	BRADO1389	-	hypothetical protein
1298	 66.19	0	1482992..1485097	-	701	146338473	-	BRADO1390	-	hypothetical protein
1299	 64.19	0	1485094..1485900	-	268	146338474	-	BRADO1391	-	hypothetical protein
1300	 65.51	0	1486095..1487042	-	315	146338475	-	BRADO1392	-	ABC transporter; periplasmic subunit, putative sugar-binding protein
1301	 67.54	0	1487143..1488174	-	343	146338476	rbsC	BRADO1393	-	sugar ABC transporter membrane protein
1302	 66.60	0	1488167..1489702	-	511	146338477	rbsA	BRADO1394	-	ABC transporter, ATP binding subunit (putative high-affinity D-ribose transport)
1303	 69.66	+1	1489826..1491427	-	533	146338478	xylB	BRADO1395	-	xylulokinase (xylulose kinase)
1304	 67.74	0	1491409..1492245	+	278	146338479	-	BRADO1396	-	glucose 1-dehydrogenase II
1305	 66.52	0	1492297..1493706	+	469	146338480	-	BRADO1397	-	hypothetical protein
1306	 67.05	0	1493759..1495342	+	527	146338481	-	BRADO1398	-	choline dehydrogenase
1307	 69.71	+1	1495603..1497276	-	557	146338482	-	BRADO1399	-	gamma-glutamyltranspeptidase family protein, ACY1 bifunctional acylase
1308	 67.67	0	1497492..1498985	+	497	146338483	-	BRADO1400	-	D-glutamate deacylase
1309	 68.06	0	1498982..1499911	+	309	146338484	-	BRADO1401	-	putative cobalamin synthesis protein cobW
1310	 67.53	0	1499925..1501079	-	384	146338485	-	BRADO1402	-	putative diguanylate cyclase (GGDEF)
1311	 67.65	0	1501147..1502259	-	370	146338486	-	BRADO1403	-	hypothetical protein
1312	 65.13	0	1502630..1503541	+	303	146338487	-	BRADO1404	-	putative dihydrodipicolinate synthase
1313	 67.69	0	1503758..1506091	+	777	146338488	-	BRADO1406	-	putative dehydrogenase/oxidase; molybdopterin binding protein
1314	 67.24	0	1506410..1507816	-	468	146338489	-	BRADO1407	-	putative two-component system histidine kinase
1315	 67.87	0	1507791..1508456	-	221	146338490	-	BRADO1408	-	OmpR family two component response transcriptional regulator
1316	 66.79	0	1508558..1509352	+	264	146338491	-	BRADO1409	-	putative ABC transporter (ATP binding subunit)
1317	 65.74	0	1509370..1510236	+	288	146338492	-	BRADO1410	-	putative ABC transporter; permease protein
1318	 63.71	0	1510275..1511288	+	337	146338493	-	BRADO1411	-	putative periplasmic substrate-binding subunit (ABC transporter)
1319	 69.62	+1	1511295..1512647	-	450	146338494	-	BRADO1412	-	putative two-component sensor histidine kinase
1320	 67.23	0	1512651..1513358	-	235	146338495	ompR	BRADO1413	-	OmpR family two-component response regulator
1321	 75.56	+2	1513568..1513837	+	89	146338496	-	BRADO1414	-	hypothetical protein
1322	 63.02	0	1513958..1514587	+	209	146338497	-	BRADO1415	-	putative signal peptide
1323	 70.11	+1	1514603..1515502	+	299	146338498	-	BRADO1416	-	hypothetical protein
1324	 69.68	+1	1515519..1516016	+	165	146338499	-	BRADO1417	-	hypothetical protein
1325	 70.64	+1	1516266..1517246	-	326	146338500	-	BRADO1418	-	hypothetical protein
1326	 65.27	0	1517335..1517979	+	214	146338501	gst1	BRADO1419	-	glutathione S-transferase
1327	 67.99	0	1518049..1520007	-	652	146338502	-	BRADO1420	-	aminopeptidase
1328	 65.73	0	1520058..1520486	-	142	146338503	-	BRADO1421	-	AsnC/Lrp family transcriptional regulator
1329	 64.13	0	1520604..1520918	+	104	146338504	-	BRADO1422	-	hypothetical protein
1330	 61.32	-1	1520978..1521295	+	105	146338505	-	BRADO1423	-	hypothetical protein
1331	 65.67	0	1521314..1521613	-	99	146338506	-	BRADO1424	-	hypothetical protein
1332	 64.88	0	1521946..1522785	+	279	146338507	-	BRADO1425	-	putative signal peptide
1333	 68.53	0	1523145..1525127	+	660	146338508	-	BRADO1426	-	hypothetical protein
1334	 67.58	0	1525317..1526852	+	511	146338509	-	BRADO1427	-	putative signal peptide
1335	 66.27	0	1526857..1528131	-	424	146338510	-	BRADO1428	-	Acyl-coenzyme A transferase
1336	 57.71	-2	1528318..1528518	-	66	146338511	cspA	BRADO1429	-	cold shock protein, DNA binding
1337	 66.03	0	1528752..1530485	-	577	146338512	cyaA	BRADO1430	-	ferredoxin:adenylate/guanylate cyclase
1338	 66.34	0	1530683..1532215	+	510	146338513	-	BRADO1431	-	putative glycosyl transferase
1339	 69.96	+1	1532216..1533247	-	343	146338514	-	BRADO1432	-	hypothetical protein
1340	 68.48	0	1533244..1534728	-	494	146338515	-	BRADO1433	-	hypothetical protein
1341	 62.36	-1	1534899..1535594	+	231	146338516	-	BRADO1434	-	hemolysin III
1342	 66.54	0	1535631..1536425	+	264	146338517	-	BRADO1435	-	putative short-chain dehydrogenase/reductase
1343	 66.84	0	1537736..1539472	+	578	146338518	-	BRADO1437	-	hypothetical protein
1344	 72.59	+2	1539998..1541719	-	573	146338519	-	BRADO1438	-	putative signal peptide
1345	 68.39	0	1542049..1543731	-	560	146338520	mdlC	BRADO1439	-	benzoylformate decarboxylase
1346	 67.84	0	1543775..1544629	-	284	146338521	-	BRADO1440	-	hypothetical protein
1347	 67.65	0	1544626..1545738	-	370	146338522	-	BRADO1441	-	formyl-coenzyme A transferase NAD(P)-binding
1348	 64.35	0	1545963..1547129	-	388	146338523	-	BRADO1442	-	acyl-CoA dehydrogenase
1349	 69.00	0	1547288..1547887	-	199	146338524	-	BRADO1443	-	putative sulfopyruvate decarboxylase beta subunit
1350	 65.75	0	1547869..1548414	-	181	146338525	-	BRADO1444	-	putative sulfopyruvate decarboxylase alpha subunit
1351	 64.75	0	1548737..1550041	-	434	146338526	-	BRADO1445	-	cytochrome P-450
1352	 64.89	0	1550302..1551597	-	431	146338527	-	BRADO1446	-	cytochrome P-450
1353	 65.56	0	1551824..1552996	+	390	146338528	ivd2	BRADO1447	-	isovaleryl-CoA dehydrogenase
1354	 63.62	0	1553294..1554343	+	349	146338529	-	BRADO1448	-	hypothetical protein
1355	 68.17	0	1554318..1555451	+	377	146338530	-	BRADO1449	-	putative metalloendopeptidase
1356	 65.60	0	1555677..1556426	-	249	146338531	-	BRADO1450	-	hypothetical protein
1357	 67.60	0	1556548..1557081	-	177	146338532	-	BRADO1451	-	hypothetical protein
1358	 68.34	0	1557395..1558945	+	516	146338533	-	BRADO1452	-	hypothetical protein
1359	 63.29	0	1559093..1559596	+	167	146338534	-	BRADO1453	-	hypothetical protein
1360	 62.19	-1	1559837..1560037	-	66	146338535	-	BRADO1454	-	putative signal peptide
1361	 61.83	-1	1560408..1560779	-	123	146338536	-	BRADO1456	-	cytochrome c
1362	 65.04	0	1560973..1562139	+	388	146338537	-	BRADO1457	-	hypothetical protein
1363	 64.22	0	1562136..1563485	+	449	146338538	-	BRADO1458	-	two-component hybrid sensor and regulator
1364	 63.61	0	1563439..1564320	-	293	146338539	-	BRADO1459	-	two-component LuxR family transcriptional regulator (modular protein)
1365	 65.88	0	1564394..1565155	-	253	146338540	-	BRADO1460	-	two-component LuxR family transcriptional regulator
1366	 65.34	0	1565152..1566357	-	401	146338541	-	BRADO1461	-	Mox; cytochrome c like protein
1367	 64.13	0	1566444..1568135	-	563	146338542	-	BRADO1462	-	quinoprotein ethanol dehydrogenase
1368	 64.47	0	1568534..1569901	+	455	146338543	-	BRADO1463	-	protein prenyltransferase
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.