IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
62	 64.18	0	73336..73857	-	173	146337237	fabA	BRADO0063	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
63	 64.06	0	74366..74749	+	127	146337238	-	BRADO0064	-	ferric uptake regulation protein
64	 65.13	0	74857..75378	-	173	146337239	-	BRADO0065	-	putative signal peptide
65	 66.17	0	75734..76735	+	333	146337240	-	BRADO0066	-	putative D-isomer specific 2-hydroxyacid dehydrogenases family protein; putative glyoxylate reductase (glycolate reductase)
66	 70.37	+1	76847..77791	-	314	146337241	-	BRADO0067	-	LysR family transcriptional regulator
67	 67.36	0	77907..78911	+	334	146337242	-	BRADO0068	-	oxidoreductase
68	 67.16	0	79118..79921	-	267	146337243	-	BRADO0069	-	putative molybdopterin biosynthesis protein moeB
69	 68.71	0	80061..81428	+	455	146337244	-	BRADO0070	-	hypothetical protein
70	 68.78	0	81858..82661	+	267	146337245	-	BRADO0071	-	hypothetical protein
71	 64.60	0	82971..83453	-	160	146337246	-	BRADO0073	-	putative cAMP-binding protein
72	 66.21	0	83514..84395	-	293	146337247	mutM	BRADO0074	-	bifunctional formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase mutM
73	 64.83	0	84502..85263	+	253	146337248	ubiE	BRADO0075	-	ubiquinone/menaquinone biosynthesis methyltransferase
74	 68.00	0	85260..86834	+	524	146337249	ubiB	BRADO0076	-	ubiquinone biosynthesis protein ubiB
75	 69.19	+1	87140..88567	+	475	146337250	coaBC	BRADO0077	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
76	 70.81	+1	88564..89022	+	152	146337251	dut	BRADO0078	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
77	 68.34	0	89215..91722	+	835	146337252	-	BRADO0079	-	putative sensor histidine kinase
78	 68.56	0	91719..93248	+	509	146337253	-	BRADO0080	-	bifunctional ATPase/phosphotransferase
79	 63.40	0	93554..93859	+	101	146337254	-	BRADO0081	-	hypothetical protein
80	 68.05	0	94016..94738	+	240	146337255	-	BRADO0082	-	putative nucleotidyl transferase family protein; putative mannose-1-phosphate guanyltransferase
81	 69.53	+1	95216..98362	+	1048	146337256	-	BRADO0083	-	helicase-exonuclease type V family protein AddB subunit
82	 68.74	0	98359..101829	+	1156	146337257	-	BRADO0084	-	helicase-exonuclease type V family protein AddA subunit
83	 65.43	0	101929..102252	+	107	146337258	trxA	BRADO0085	-	thioredoxin 1, redox factor
84	 67.06	0	102527..103540	+	337	146337259	ligC	BRADO0086	-	ATP-dependent DNA ligase
85	 64.78	0	103541..104281	-	246	146337260	-	BRADO0087	-	putative phosphoesterase
86	 66.22	0	104295..105638	-	447	146337261	-	BRADO0088	-	folC bifunctional protein
87	 67.31	0	105635..106573	-	312	146337262	accD	BRADO0089	-	acetyl-CoA carboxylase subunit beta
88	 68.94	0	106668..107504	-	278	146337263	trpA	BRADO0090	-	tryptophan synthase subunit alpha
89	 65.03	0	107501..108724	-	407	146337264	trpB	BRADO0091	-	tryptophan synthase subunit beta
90	 65.45	0	108721..109380	-	219	146337265	trpF	BRADO0092	-	N-(5'-phosphoribosyl)anthranilate isomerase
91	 67.94	0	109459..109851	-	130	146337266	-	BRADO0093	-	putative signal peptide
92	 63.52	0	109930..110247	-	105	146337267	ihfB	BRADO0094	-	integration host factor subunit beta
93	 65.44	0	110415..111395	-	326	146337268	-	BRADO0095	-	S49 family peptidase
94	 62.87	0	111819..113528	-	569	146337269	rpsA	BRADO0096	-	30S ribosomal protein S1
95	 66.67	0	113798..114436	-	212	146337270	cmk	BRADO0097	-	cytidylate kinase (CK) (cytidine monophosphate kinase) (CMP kinase)
96	 69.28	+1	114433..115770	-	445	146337271	aroA	BRADO0098	-	3-phosphoshikimate 1-carboxyvinyltransferase
97	 64.44	0	115920..116324	+	134	146337272	-	BRADO0099	-	hypothetical protein
98	 60.32	-1	116707..116958	+	83	146337273	-	BRADO0100	-	excinuclease ABC subunit C
99	 66.45	0	116966..117421	-	151	146337274	ohrR	BRADO0101	-	organic hydroperoxide resistance transcriptional regulator
100	 68.78	0	117594..118019	+	141	146337275	ohr	BRADO0102	-	organic hydroperoxide resistance protein
101	 66.67	0	118176..119378	+	400	146337276	-	BRADO0103	-	putative caiB/baiF CoA-transferase family protein; putative Formyl-CoA transferase
102	 62.88	0	119646..120887	+	413	146337277	-	BRADO0104	-	putative sugar ABC transporter (substrate binding protein); putative glycerol 3-phosphate transport protein, ugpB-like protein
103	 63.72	0	120959..121840	+	293	146337278	-	BRADO0105	-	putative sugar ABC transporter (permease protein); putative glycerol 3-phosphate transport protein, ugpA-like protein
104	 62.90	0	121840..122688	+	282	146337279	-	BRADO0106	-	putative sugar ABC transporter (permease protein); putative glycerol 3-phosphate transport protein, ugpE-like protein
105	 66.67	0	122800..123879	+	359	146337280	-	BRADO0107	-	glycerol-3-phosphate transporter ATP-binding subunit
106	 60.33	-1	124014..124439	+	141	146337281	-	BRADO0108	-	putative small heat shock protein; putative HSP20-like chaperone
107	 64.77	0	124498..124761	+	87	146337282	-	BRADO0109	-	hypothetical protein
108	 67.06	0	124912..125421	+	169	146337283	-	BRADO0110	-	GNAT family acetyltransferase
109	 68.40	0	125439..125900	-	153	146337284	ptsN	BRADO0111	-	nitrogen regulatory protein
110	 64.18	0	126231..126833	-	200	146337285	-	BRADO0112	-	sigma-54 modulation protein
111	 65.39	0	126924..128564	-	546	146337286	rpoN	BRADO0113	-	RNA polymerase factor sigma-54
112	 68.00	0	128776..129825	-	349	146337287	-	BRADO0114	-	putative ABC transporter ATP-binding protein
113	 69.53	+1	130189..130887	-	232	146337288	-	BRADO0115	-	putative OstA-like protein
114	 64.56	0	130892..131602	-	236	146337289	-	BRADO0116	-	hypothetical protein
115	 64.72	0	131761..132375	-	204	146337290	-	BRADO0117	-	putative 3'-5' exonuclease family protein
116	 64.81	0	132868..133839	+	323	146337291	-	BRADO0118	-	putative TRAP-type C4-dicarboxylate transport system, binding periplasmic protein (DctP subunit)
117	 62.27	-1	133948..134493	+	181	146337292	-	BRADO0119	-	putative TRAP-type C4-dicarboxylate transport system, small permease component (dctQ subunit)
118	 64.19	0	134484..135776	+	430	146337293	-	BRADO0120	-	putative TRAP-type C4-dicarboxylate transport system, large permease component (dctM subunit)
119	 66.80	0	136094..136858	-	254	146337294	-	BRADO0121	-	hypothetical protein
120	 61.81	-1	136941..137084	-	47	146337295	-	BRADO0122	-	putative cytochrome c precursor
121	 65.45	0	137689..139410	-	573	146337296	-	BRADO0123	-	putative quinoprotein ethanol dehydrogenase family protein
122	 67.80	0	140245..141123	+	292	146337297	-	BRADO0124	-	putative oxidoreductase; putative 3-hydroxyisobutyrate dehydrogenase
123	 57.64	-2	141449..141880	-	143	146337298	-	BRADO0125	-	hypothetical protein
124	 71.52	+1	143495..144463	+	322	146337299	-	BRADO0128	-	putative NAD dependent epimerase/dehydratase family protein
125	 64.06	0	144576..145382	-	268	146337300	uppP	BRADO0129	-	undecaprenyl pyrophosphate phosphatase
126	 67.39	0	145741..146433	+	230	146337301	-	BRADO0130	-	putative glutathione S-transferase family protein
127	 67.79	0	146583..147560	+	325	146337302	-	BRADO0131	-	putative iron-sulfur cluster binding protein
128	 69.59	+1	147572..148357	-	261	146337303	-	BRADO0132	-	hypothetical protein
129	 60.20	-1	148620..149222	+	200	146337304	infC	BRADO0134	-	translation initiation factor IF-3
130	 72.95	+2	149315..149680	-	121	146337305	-	BRADO0135	-	putative signal peptide
131	 60.70	-1	149944..150144	+	66	146337306	rpmI	BRADO0137	-	50S ribosomal protein L35
132	 65.56	0	150217..150576	+	119	146337307	rplT	BRADO0138	-	50S ribosomal protein L20
133	 64.91	0	150720..151802	+	360	146337308	pheS	BRADO0139	-	phenylalanyl-tRNA synthetase subunit alpha
134	 61.39	-1	151799..152215	+	138	146337309	-	BRADO0140	-	hypothetical protein
135	 67.16	0	152212..154620	+	802	146337310	pheT	BRADO0141	-	phenylalanyl-tRNA synthetase subunit beta
136	 67.80	0	154617..155408	+	263	146337311	-	BRADO0142	-	hypothetical protein
137	 61.69	-1	155442..156386	+	314	146337312	-	BRADO0143	-	beta-lactamase family hydrolase
138	 70.21	+1	156542..157951	-	469	146337313	-	BRADO0144	-	putative flavin containing amine oxidoreductase
139	 63.70	0	158146..159123	+	325	146337314	-	BRADO0145	-	hypothetical protein
140	 61.96	-1	159126..159401	-	91	146337315	-	BRADO0146	-	hypothetical protein
141	 68.57	0	159669..162137	+	822	146337316	actP	BRADO0147	-	copper-transporting P-type ATPase
142	 66.27	0	162348..163100	+	250	146337317	-	BRADO0148	-	CysZ-like protein
143	 68.02	0	163038..164657	-	539	146337318	-	BRADO0149	-	multidrug ABC transporter membrane protein
144	 67.91	0	164654..165136	-	160	146337319	-	BRADO0150	-	hypothetical protein
145	 68.38	0	165169..166221	-	350	146337320	-	BRADO0151	-	putative Type III polyketide synthase; putative chalcone synthase
146	 66.91	0	166604..167437	-	277	146337321	nth	BRADO0152	-	endonuclease III DNA-(apurinic or apyrimidinic site) lyase
147	 67.04	0	167460..167993	+	177	146337322	-	BRADO0153	-	hypothetical protein
148	 70.33	+1	168384..169283	+	299	146337323	-	BRADO0154	-	putative methylated-DNA--protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase); putative ADA regulatory protein
149	 56.73	-2	169380..169721	-	113	146337324	-	BRADO0155	-	hypothetical protein
150	 64.91	0	170071..170355	-	94	146337325	-	BRADO0156	-	hypothetical protein
151	 66.35	0	170819..171442	-	207	146337326	gpmA	BRADO0157	-	phosphoglyceromutase
152	 68.86	0	171467..172285	-	272	146337327	dapB	BRADO0158	-	dihydrodipicolinate reductase
153	 63.70	0	172367..172669	-	100	146337328	-	BRADO0159	-	hypothetical protein
154	 70.08	+1	172703..173434	-	243	146337329	pyrF	BRADO0160	-	orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase)
155	 68.79	0	173441..174052	-	203	146337330	-	BRADO0161	-	putative NADPH-dependent FMN reductase
156	 66.33	0	174065..174667	-	200	146337331	pmtA	BRADO0162	-	phospholipid N-methyltransferase
157	 68.26	0	174885..176015	-	376	146337332	dnaJ	BRADO0163	-	chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
158	 64.35	0	176158..178053	-	631	146337333	dnaK	BRADO0164	-	molecular chaperone DnaK
159	 68.80	0	178591..179526	+	311	146337334	-	BRADO0165	-	putative signal peptide
160	 65.66	0	179537..180232	-	231	146337335	-	BRADO0166	-	putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase
161	 66.76	0	180504..181550	+	348	146337336	-	BRADO0168	-	glycosyl transferase family protein
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.