IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
836	 62.25	+1	838145..839164	+	339	161618827	cobU	BCAN_A0881	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
837	 54.58	0	839272..839751	-	159	161618828	-	BCAN_A0882	-	hypothetical protein
838	 59.97	0	839880..840521	-	213	161618829	-	BCAN_A0883	-	hypothetical protein
839	 57.72	0	840618..841187	-	189	161618830	-	BCAN_A0884	-	nuclease
840	 47.31	-2	841158..841436	+	92	161618831	-	BCAN_A0885	-	hypothetical protein
841	 56.97	0	841808..842611	+	267	161618832	exoR	BCAN_A0886	-	exopolysaccharide production negative regulator precursor
842	 54.92	0	842670..843452	-	260	161618833	-	BCAN_A0887	-	exodeoxyribonuclease III (xth)
843	 57.49	0	843621..844328	+	235	161618834	-	BCAN_A0888	-	hypothetical protein
844	 54.74	0	844409..844735	-	108	161618835	-	BCAN_A0889	-	iron-sulfur cluster assembly accessory protein
845	 58.64	0	844902..846110	+	402	161618836	dgt	BCAN_A0890	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
846	 56.94	0	846332..848089	+	585	161618837	argS	BCAN_A0891	-	arginyl-tRNA synthetase
847	 59.38	0	848301..851237	+	978	161618838	-	BCAN_A0892	-	Oleosin B6
848	 59.22	0	851438..852457	+	339	161618839	nagZ	BCAN_A0893	-	Beta-hexosaminidase
849	 60.92	0	852530..853381	+	283	161618840	scpA	BCAN_A0894	-	segregation and condensation protein A
850	 60.47	0	853374..854099	+	241	161618841	scpB	BCAN_A0895	-	segregation and condensation protein B
851	 55.71	0	854245..854463	+	72	161618842	tatA	BCAN_A0896	-	twin argininte translocase protein A
852	 56.21	0	854544..855155	+	203	161618843	tatB	BCAN_A0897	-	sec-independent translocase
853	 57.09	0	855152..855976	+	274	161618844	tatC	BCAN_A0898	-	Sec-independent protein translocase TatC
854	 59.27	0	856053..857336	+	427	161618845	serS	BCAN_A0899	-	seryl-tRNA synthetase
855	 60.94	0	857485..858252	+	255	161618846	surE	BCAN_A0900	-	stationary phase survival protein SurE
856	 58.59	0	858249..858917	+	222	161618847	pcm	BCAN_A0901	-	protein-L-isoaspartate O-methyltransferase
857	 60.43	0	859296..860594	+	432	161618848	lppB	BCAN_A0902	-	Outer membrane antigenic lipoprotein B precursor
858	 54.79	0	860643..861509	-	288	161618849	-	BCAN_A0903	-	hypothetical protein
859	 54.39	0	861669..862010	+	113	161618850	yajC	BCAN_A0904	-	preprotein translocase, YajC subunit
860	 56.66	0	862129..864456	+	775	161618851	secD	BCAN_A0905	-	bifunctional preprotein translocase subunit SecD/SecF
861	 60.51	0	864459..864848	+	129	161618852	-	BCAN_A0906	-	hypothetical protein
862	 58.15	0	864854..865687	+	277	161618853	crtB	BCAN_A0907	-	phytoene synthase
863	 59.74	0	865739..867139	-	466	161618854	gid	BCAN_A0908	-	tRNA (uracil-5-)-methyltransferase Gid
864	 59.86	0	867399..867545	-	48	161618855	-	BCAN_A0909	-	hypothetical protein
865	 56.55	0	867819..868955	+	378	161618856	-	BCAN_A0910	-	hypothetical protein
866	 55.96	0	868952..869521	+	189	161618857	-	BCAN_A0911	-	hypothetical protein
867	 56.18	0	869919..871358	+	479	161618858	tig	BCAN_A0913	-	trigger factor
868	 57.09	0	871508..873010	+	500	161618859	gatB	BCAN_A0914	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
869	 53.57	0	873010..873513	+	167	161618860	-	BCAN_A0915	-	GCN5-related N-acetyltransferase
870	 59.12	0	873673..874083	+	136	161618861	-	BCAN_A0916	-	NADH dehydrogenase
871	 57.96	0	874277..874747	+	156	161618862	-	BCAN_A0917	-	hypothetical protein
872	 58.80	0	874791..875324	-	177	161618863	aat	BCAN_A0918	-	leucyl/phenylalanyl-tRNA--protein transferase
873	 57.62	0	875412..876770	-	452	161618864	accC	BCAN_A0919	-	acetyl-CoA carboxylase biotin carboxylase subunit
874	 61.15	0	876820..877290	-	156	161618865	accB	BCAN_A0920	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
875	 55.06	0	877292..877765	-	157	161618866	aroQ	BCAN_A0921	-	3-dehydroquinate dehydratase
876	 55.89	0	878009..878806	-	265	161618867	-	BCAN_A0922	-	DSBA oxidoreductase
877	 58.47	0	878854..880269	-	471	161618868	-	BCAN_A0923	-	peptidase M48 Ste24p
878	 59.36	0	880461..881624	+	387	161618869	-	BCAN_A0924	-	aminotransferase class I and II
879	 58.94	0	881743..884511	-	922	161618870	-	BCAN_A0925	-	ribonuclease
880	 60.75	0	884514..884699	+	61	161618871	-	BCAN_A0926	-	hypothetical protein
881	 56.90	0	885190..886458	+	422	161618872	-	BCAN_A0927	-	N-acetylmuramoyl-L-alanine amidase
882	 58.33	0	886738..889197	+	819	161618873	-	BCAN_A0928	-	1A family penicillin-binding protein
883	 57.66	0	889501..890466	+	321	161618874	prfB	BCAN_A0929	-	peptide chain release factor 2
884	 44.24	-2	890525..890689	-	54	161618875	-	BCAN_A0930	-	hypothetical protein
885	 58.27	0	890660..891028	+	122	161618876	-	BCAN_A0931	-	transposase for insertion sequence element IS6501
886	 50.64	-1	891025..891417	+	130	161618877	-	BCAN_A0932	-	transposase for insertion sequence element IS6501
887	 61.71	+1	891569..891931	-	120	161618878	-	BCAN_A0933	-	peptidase M23B
888	 57.68	0	892102..892947	-	281	161618879	-	BCAN_A0934	-	hypothetical protein
889	 56.13	0	892969..893433	-	154	161618880	-	BCAN_A0935	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
890	 56.61	0	893678..897118	+	1146	161618881	-	BCAN_A0936	-	hypothetical protein
891	 58.29	0	897178..898431	-	417	161618882	tyrS	BCAN_A0937	-	tyrosyl-tRNA synthetase
892	 60.52	0	898547..899668	+	373	161618883	anmK	BCAN_A0938	-	anhydro-N-acetylmuramic acid kinase
893	 55.56	0	899665..899997	-	110	161618884	qacF	BCAN_A0939	-	quaternary ammonium compound-resistance protein qacF
894	 57.63	0	900109..900783	-	224	161618885	-	BCAN_A0940	-	hypothetical protein
895	 60.14	0	900988..902166	+	392	161618886	iscS	BCAN_A0941	-	cysteine desulfurase
896	 55.97	0	902347..903870	+	507	161618887	sufB	BCAN_A0942	-	cysteine desulfurase activator complex subunit SufB
897	 56.22	0	903938..904693	+	251	161618888	sufC	BCAN_A0943	-	FeS assembly ATPase SufC
898	 59.08	0	904707..905984	+	425	161618889	sufD	BCAN_A0944	-	FeS assembly protein SufD
899	 55.42	0	906066..907310	+	414	161618890	sufS	BCAN_A0945	-	SufS subfamily cysteine desulfurase
900	 57.38	0	907307..907726	+	139	161618891	-	BCAN_A0946	-	FeS assembly SUF system protein
901	 51.65	-1	907760..908731	-	323	161618892	-	BCAN_A0947	-	glycosyl transferase, group 2 family protein
902	 54.52	0	909158..909931	+	257	161618893	ppnK	BCAN_A0949	-	inorganic polyphosphate/ATP-NAD kinase
903	 57.97	0	910259..911707	+	482	161618894	-	BCAN_A0950	-	ATP-dependent RNA helicase DDX17
904	 54.40	0	911962..912450	-	162	161618895	sufA	BCAN_A0951	-	FeS assembly scaffold SufA
905	 54.66	0	912460..913017	-	185	161618896	-	BCAN_A0952	-	hypothetical protein
906	 54.65	0	912517..913140	+	207	161618897	-	BCAN_A0953	-	hypothetical protein
907	 60.20	0	913221..913421	+	66	161618898	-	BCAN_A0954	-	heavy metal transport/detoxification protein
908	 54.47	0	913465..913710	+	81	161618899	-	BCAN_A0955	-	hypothetical protein
909	 56.05	0	913748..914416	+	222	161618900	pcm	BCAN_A0956	-	protein-L-isoaspartate O-methyltransferase
910	 59.08	0	914555..915925	+	456	161618901	-	BCAN_A0957	-	TolC family type I secretion outer membrane protein
911	 57.79	0	916175..916906	+	243	161618902	-	BCAN_A0958	-	hypothetical protein
912	 57.19	0	917197..919929	+	910	161618903	valS	BCAN_A0959	-	valyl-tRNA synthetase
913	 52.73	-1	920293..920622	+	109	161618904	-	BCAN_A0960	-	membrane protein involved in aromatic hydrocarbon degradation
914	 52.53	-1	920731..921621	+	296	161618905	-	BCAN_A0961	-	membrane protein involved in aromatic hydrocarbon degradation
915	 56.16	0	921687..922562	-	291	161618906	-	BCAN_A0962	-	6-phosphogluconate dehydrogenase NAD-binding
916	 57.49	0	922590..923210	-	206	161618907	-	BCAN_A0963	-	glutathione S-transferase IV
917	 56.35	0	923383..924216	-	277	161618908	-	BCAN_A0964	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
918	 57.40	0	924219..924941	-	240	161618909	-	BCAN_A0965	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
919	 47.78	-2	924957..925136	-	59	161618910	-	BCAN_A0966	-	hypothetical protein
920	 55.27	0	925184..925990	-	268	161618911	-	BCAN_A0967	-	extracellular solute-binding protein
921	 58.45	0	927662..928696	-	344	161618912	moaA	BCAN_A0970	-	molybdenum cofactor biosynthesis protein A
922	 55.28	0	928883..929242	+	119	161618913	-	BCAN_A0971	-	hypothetical protein
923	 56.28	0	929310..930416	-	368	161618914	-	BCAN_A0972	-	monooxygenase, FAD-binding
924	 58.46	0	930760..932379	-	539	161618915	-	BCAN_A0973	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
925	 55.38	0	933157..934689	+	510	161618916	-	BCAN_A0974	-	peptidoglycan binding domain-containing protein
926	 53.57	0	935490..935741	-	83	161618917	-	BCAN_A0977	-	transglycosylase-associated protein
927	 54.94	0	935896..936057	+	53	161618918	-	BCAN_A0978	-	hypothetical protein
928	 50.78	-1	936250..937275	-	341	161618919	-	BCAN_A0980	-	hypothetical protein
929	 57.69	0	937450..938652	+	400	161618920	-	BCAN_A0981	-	hypothetical protein
930	 51.47	-1	937680..937883	-	67	161618921	-	BCAN_A0982	-	hypothetical protein
931	 51.52	-1	938649..938879	+	76	161618922	-	BCAN_A0983	-	hypothetical protein
932	 57.61	0	938876..939151	+	91	161618923	-	BCAN_A0984	-	hypothetical protein
933	 54.76	0	939174..939761	+	195	161618924	-	BCAN_A0985	-	hypothetical protein
934	 57.58	0	940907..941038	-	43	161618925	-	BCAN_A0988	-	hypothetical protein
935	 52.05	-1	941055..941225	-	56	161618926	-	BCAN_A0989	-	hypothetical protein
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.