IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
528	 58.02	0	537876..538928	+	350	161618519	-	BCAN_A0558	-	hypothetical protein
529	 59.68	0	538936..540108	+	390	161618520	-	BCAN_A0559	-	oxidoreductase domain-containing protein
530	 56.35	0	540150..541457	-	435	161618521	xylA	BCAN_A0560	-	xylose isomerase
531	 61.78	+1	541504..542955	-	483	161618522	xylB	BCAN_A0561	-	xylulokinase
532	 59.50	0	542988..544019	-	343	161618523	degA	BCAN_A0562	-	HTH-type transcriptional regulator degA
533	 57.89	0	544281..545351	-	356	161618524	-	BCAN_A0563	-	helix-turn-helix domain-containing protein
534	 58.74	0	545890..547353	-	487	161618525	betB	BCAN_A0564	-	betaine aldehyde dehydrogenase
535	 59.76	0	547539..549188	-	549	161618526	betA	BCAN_A0565	-	choline dehydrogenase
536	 58.63	0	549191..549787	-	198	161618527	betI	BCAN_A0566	-	transcriptional regulator BetI
537	 60.70	0	549978..551000	+	340	161618528	-	BCAN_A0567	-	L-asparaginase II protein
538	 59.02	0	551045..551515	+	156	161618529	greA	BCAN_A0568	-	transcription elongation factor GreA
539	 50.26	-1	551512..551901	-	129	161618530	-	BCAN_A0569	-	death-on-curing family protein
540	 51.52	-1	551898..552128	-	76	161618531	-	BCAN_A0570	-	addiction module antidote
541	 55.79	0	552189..553181	-	330	161618532	-	BCAN_A0571	-	Mg2 transporter protein CorA family protein
542	 60.47	0	553337..554014	+	225	161618533	-	BCAN_A0572	-	GntR domain-containing protein
543	 61.63	+1	554011..555321	+	436	161618534	-	BCAN_A0573	-	major facilitator transporter
544	 60.61	0	555378..555740	-	120	161618535	-	BCAN_A0574	-	hypothetical protein
545	 59.66	0	556076..557587	+	503	161618536	-	BCAN_A0575	-	protein of unknown function DUF853 NPT hydrolase
546	 48.48	-2	557629..557727	+	32	161618537	-	BCAN_A0576	-	hypothetical protein
547	 60.81	0	557785..558501	-	238	161618538	-	BCAN_A0577	-	ErfK/YbiS/YcfS/YnhG family protein
548	 58.10	0	558804..559457	-	217	161618539	dehII	BCAN_A0578	-	haloacid dehalogenase, type II
549	 54.33	0	559680..560279	+	199	161618540	sodB	BCAN_A0579	-	superoxide dismutase (Fe)
550	 56.60	0	560325..560900	+	191	161618541	-	BCAN_A0580	-	hypothetical protein
551	 58.14	0	560451..560837	-	128	161618542	-	BCAN_A0581	-	hypothetical protein
552	 57.75	0	560904..563012	-	702	161618543	ptrB	BCAN_A0582	-	protease 2
553	 44.10	-2	563436..563630	+	64	161618544	-	BCAN_A0583	-	hypothetical protein
554	 53.61	0	563585..564013	+	142	161618545	rosAR	BCAN_A0584	-	transcriptional regulatory protein rosAr
555	 54.49	0	564221..564532	-	103	161618546	-	BCAN_A0585	-	hypothetical protein
556	 56.80	0	564713..565168	+	151	161618547	-	BCAN_A0586	-	hypothetical protein
557	 59.50	0	565165..565959	+	264	161618548	-	BCAN_A0587	-	hypothetical protein
558	 60.24	0	566050..567387	+	445	161618549	iaaH	BCAN_A0588	-	amidase
559	 59.62	0	567428..567853	-	141	161618550	-	BCAN_A0589	-	hypothetical protein
560	 56.44	0	567933..568382	-	149	161618551	-	BCAN_A0590	-	hypothetical protein
561	 59.18	0	568673..570502	+	609	161618552	-	BCAN_A0591	-	integral membrane sensor signal transduction histidine kinase
562	 60.28	0	570429..571445	+	338	161618553	-	BCAN_A0592	-	peptidoglycan binding domain-containing protein
563	 57.18	0	571459..571806	+	115	161618554	-	BCAN_A0593	-	hypothetical protein
564	 58.50	0	571817..572893	-	358	161618555	-	BCAN_A0594	-	hypothetical protein
565	 55.06	0	573091..573633	-	180	161618556	-	BCAN_A0595	-	hypothetical protein
566	 62.91	+1	573626..574237	-	203	161618557	-	BCAN_A0596	-	hypothetical protein
567	 59.20	0	574244..576400	-	718	161618558	-	BCAN_A0597	-	1A family penicillin-binding protein
568	 60.04	0	576758..577270	+	170	161618559	-	BCAN_A0598	-	hypothetical protein
569	 64.89	+1	577233..578468	+	411	161618560	-	BCAN_A0599	-	hypothetical protein
570	 61.89	+1	578500..579693	+	397	161618561	-	BCAN_A0600	-	HK97 family phage portal protein
571	 61.64	+1	579690..580067	+	125	161618562	-	BCAN_A0601	-	hypothetical protein
572	 62.93	+1	580054..580722	+	222	161618563	-	BCAN_A0602	-	HK97 family phage prohead protease
573	 60.00	0	580744..582018	+	424	161618564	-	BCAN_A0603	-	HK97 family phage major capsid protein
574	 58.73	0	582183..582749	+	188	161618565	-	BCAN_A0604	-	hypothetical protein
575	 58.41	0	582746..583084	+	112	161618566	-	BCAN_A0605	-	phage head-tail adaptor
576	 55.95	0	583081..583248	+	55	161618567	-	BCAN_A0606	-	hypothetical protein
577	 58.33	0	583208..583615	+	135	161618568	-	BCAN_A0607	-	hypothetical protein
578	 58.70	0	583656..584069	+	137	161618569	-	BCAN_A0608	-	TP901-1 family phage major tail protein
579	 62.28	+1	584066..584407	+	113	161618570	-	BCAN_A0609	-	hypothetical protein
580	 64.33	+1	584451..584621	+	56	161618571	-	BCAN_A0610	-	hypothetical protein
581	 63.37	+1	584626..585171	+	181	161618572	-	BCAN_A0611	-	hypothetical protein
582	 59.08	0	585174..585806	+	210	161618573	-	BCAN_A0612	-	hypothetical protein
583	 60.62	0	585803..586678	+	291	161618574	-	BCAN_A0613	-	phage protein
584	 64.37	+1	586675..587109	+	144	161618575	-	BCAN_A0614	-	NlpC/P60 family phage cell wall peptidase
585	 56.04	0	591033..591239	+	68	161618576	-	BCAN_A0617	-	hypothetical protein
586	 62.63	+1	591401..591697	+	98	161618577	-	BCAN_A0618	-	hypothetical protein
587	 57.83	0	591776..592465	+	229	161618578	-	BCAN_A0619	-	two component transcriptional regulator
588	 58.41	0	592615..593850	+	411	161618579	phoQ	BCAN_A0620	-	sensor protein phoQ
589	 58.85	0	593911..594396	+	161	161618580	omp	BCAN_A0621	-	17 kDa surface antigen precursor
590	 61.84	+1	594497..595636	+	379	161618581	-	BCAN_A0622	-	cytochrome c-type biogenesis protein
591	 59.04	0	595633..596130	+	165	161618582	ccmE	BCAN_A0623	-	cytochrome c-type biogenesis protein CcmE
592	 59.99	0	596150..598141	+	663	161618583	ccmF	BCAN_A0624	-	cytochrome c-type biogenesis protein CcmF
593	 56.18	0	598138..598614	+	158	161618584	-	BCAN_A0625	-	cytochrome c-type biogenesis protein ccl2 precursor
594	 56.32	0	598499..598672	+	57	161618585	-	BCAN_A0626	-	hypothetical protein
595	 60.51	0	598756..600297	+	513	161618586	degP	BCAN_A0627	-	protease Do
596	 60.31	0	600391..601098	+	235	161618587	copR	BCAN_A0628	-	transcriptional activator protein copR
597	 59.19	0	601098..602501	+	467	161618588	-	BCAN_A0629	-	integral membrane sensor signal transduction histidine kinase
598	 58.43	0	602624..605575	+	983	161618589	glnE	BCAN_A0630	-	glutamate-ammonia-ligase adenylyltransferase
599	 50.52	-1	605620..607731	-	703	161618590	lgtB	BCAN_A0631	-	lacto-N-neotetraose biosynthesis glycosyl transferase lgtB
600	 60.71	0	608002..610353	-	783	161618591	-	BCAN_A0632	-	multi-sensor signal transduction histidine kinase
601	 59.28	0	610744..613395	-	883	161618592	pepN	BCAN_A0633	-	aminopeptidase N
602	 58.70	0	613564..614580	+	338	161618593	-	BCAN_A0634	-	hypothetical protein
603	 58.87	0	614585..615841	-	418	161618594	-	BCAN_A0635	-	major facilitator transporter
604	 61.40	+1	616003..616875	-	290	161618595	-	BCAN_A0636	-	uracil-DNA glycosylase
605	 59.22	0	617264..618955	+	563	161618596	-	BCAN_A0637	-	electron transfer flavoprotein-ubiquinone oxidoreductase
606	 59.24	0	619071..620147	-	358	161618597	-	BCAN_A0638	-	hypothetical protein
607	 58.42	0	620200..621702	-	500	161618598	amn	BCAN_A0639	-	AMP nucleosidase
608	 55.97	0	621755..621913	+	52	161618599	-	BCAN_A0640	-	hypothetical protein
609	 51.77	-1	621910..622191	+	93	161618600	-	BCAN_A0641	-	hypothetical protein
610	 54.71	0	622269..622979	+	236	161618601	-	BCAN_A0642	-	glutathione S-transferase domain-containing protein
611	 57.76	0	623038..623385	-	115	161618602	-	BCAN_A0643	-	hypothetical protein
612	 53.26	0	623382..623672	-	96	161618603	-	BCAN_A0644	-	hypothetical protein
613	 57.36	0	623891..624148	+	85	161618604	-	BCAN_A0645	-	hypothetical protein
614	 55.04	0	624208..624981	-	257	161618605	-	BCAN_A0646	-	hypothetical protein
615	 57.60	0	625635..626285	+	216	161618606	-	BCAN_A0647	-	hypothetical protein
616	 62.13	+1	626330..626704	-	124	161618607	-	BCAN_A0648	-	hypothetical protein
617	 55.64	0	626722..627855	-	377	161618608	hisC	BCAN_A0649	-	histidinol-phosphate aminotransferase
618	 52.21	-1	628218..629144	-	308	161618609	xerC	BCAN_A0650	-	tyrosine recombinase xerC
619	 56.79	0	629418..630521	-	367	161618610	ropA	BCAN_A0651	-	Outer membrane protein IIIA precursor
620	 56.91	0	631322..632449	+	375	161618611	ropA	BCAN_A0653	-	Outer membrane protein IIIA precursor
621	 53.58	0	632593..633234	+	213	161618612	-	BCAN_A0654	-	hypothetical protein
622	 49.18	-1	633290..633472	+	60	161618613	-	BCAN_A0655	-	hypothetical protein
623	 57.78	0	633534..634208	+	224	161618614	-	BCAN_A0656	-	hypothetical protein
624	 59.67	0	634271..636328	-	685	161618615	-	BCAN_A0657	-	lytic transglycosylase catalytic
625	 60.61	0	636252..636416	+	54	161618616	-	BCAN_A0658	-	hypothetical protein
626	 56.92	0	636804..637685	+	293	161618617	dapA	BCAN_A0659	-	dihydrodipicolinate synthase
627	 55.77	0	637776..638252	+	158	161618618	smpB	BCAN_A0660	-	SsrA-binding protein
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.