IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
344	 61.93	+1	366665..367951	+	428	161618335	ttuD	BCAN_A0363	-	hydroxypyruvate reductase
345	 53.46	0	367932..368090	-	52	161618336	ccoS	BCAN_A0364	-	cytochrome oxidase maturation protein, cbb3-type
346	 60.82	0	368087..370345	-	752	161618337	-	BCAN_A0365	-	heavy metal translocating P-type ATPase
347	 57.03	0	370342..370839	-	165	161618338	-	BCAN_A0366	-	FixH family protein
348	 58.28	0	370839..372389	-	516	161618339	ccoG	BCAN_A0367	-	cytochrome c oxidase accessory protein CcoG
349	 60.65	0	372549..373412	-	287	161618340	-	BCAN_A0368	-	cytochrome c oxidase, cbb3-type, subunit III
350	 49.69	-1	373405..373563	-	52	161618341	-	BCAN_A0369	-	Cbb3-type cytochrome oxidase component
351	 58.88	0	373578..374309	-	243	161618342	ccoO	BCAN_A0370	-	cytochrome c oxidase, cbb3-type, subunit II
352	 57.87	0	374324..375949	-	541	161618343	ccoN	BCAN_A0371	-	cytochrome c oxidase, cbb3-type, subunit I
353	 58.82	0	376167..376625	-	152	161618344	fur	BCAN_A0372	-	ferric uptake regulation protein
354	 51.99	-1	376624..376950	+	108	161618345	-	BCAN_A0373	-	hypothetical protein
355	 57.40	0	377067..377681	+	204	161618346	-	BCAN_A0374	-	DSBA oxidoreductase
356	 60.65	0	377730..379175	-	481	161618347	-	BCAN_A0375	-	succinate semialdehyde dehydrogenase
357	 59.58	0	379374..380459	+	361	161618348	-	BCAN_A0376	-	methylated-DNA-[protein]-cysteine S-methyltransferase
358	 53.56	0	380641..380991	+	116	161618349	-	BCAN_A0377	-	hypothetical protein
359	 60.06	0	381328..382371	+	347	161618350	-	BCAN_A0378	-	hypothetical protein
360	 56.01	0	383823..385070	+	415	161618351	-	BCAN_A0380	-	transport protein
361	 59.86	0	385109..386107	-	332	161618352	-	BCAN_A0381	-	polysaccharide deacetylase
362	 62.35	+1	386353..387024	+	223	161618353	-	BCAN_A0382	-	hypothetical protein
363	 61.78	+1	387046..388497	+	483	161618354	-	BCAN_A0383	-	GTP-binding protein EngA
364	 56.80	0	388656..389972	+	438	161618355	dnaK	BCAN_A0384	-	chaperone protein dnaK
365	 60.39	0	390409..391698	+	429	161618356	-	BCAN_A0385	-	cell wall hydrolase SleB
366	 55.89	0	391969..392367	+	132	161618357	-	BCAN_A0386	-	hypothetical protein
367	 55.87	0	392475..393224	+	249	161618358	atpB	BCAN_A0387	-	F0F1 ATP synthase subunit A
368	 61.84	+1	393292..393519	+	75	161618359	atpE	BCAN_A0388	-	F0F1 ATP synthase subunit C
369	 62.84	+1	393691..394317	+	208	161618360	-	BCAN_A0389	-	F0F1 ATP synthase subunit B'
370	 56.04	0	394328..394807	+	159	161618361	atpF	BCAN_A0390	-	F0F1 ATP synthase subunit B
371	 62.44	+1	394930..395592	-	220	161618362	rnhB	BCAN_A0391	-	ribonuclease HII
372	 60.95	0	395769..396941	-	390	161618363	-	BCAN_A0392	-	radical SAM domain-containing protein
373	 56.78	0	397662..397934	-	90	161618364	-	BCAN_A0394	-	hypothetical protein
374	 55.80	0	398078..398353	-	91	161618365	-	BCAN_A0395	-	hypothetical protein
375	 33.33	-2	398425..398637	-	70	161618366	-	BCAN_A0396	-	hypothetical protein
376	 47.62	-2	398621..398767	-	48	161618367	-	BCAN_A0397	-	hypothetical protein
377	 60.11	0	398712..399611	-	299	161618368	ispE	BCAN_A0398	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
378	 61.26	0	399641..399862	-	73	161618369	-	BCAN_A0399	-	hypothetical protein
379	 59.98	0	400293..401399	-	368	161618370	-	BCAN_A0400	-	peptidase S49
380	 59.56	0	401320..402501	-	393	161618371	nhaA	BCAN_A0401	-	Na+/H+ antiporter NhaA
381	 46.85	-2	402521..402742	-	73	161618372	-	BCAN_A0402	-	hypothetical protein
382	 65.39	+1	402791..403573	-	260	161618373	-	BCAN_A0403	-	methyltransferase small
383	 53.07	0	403570..403797	-	75	161618374	-	BCAN_A0404	-	hypothetical protein
384	 61.68	+1	404060..405082	+	340	161618375	-	BCAN_A0405	-	hypothetical protein
385	 59.11	0	405386..407251	+	621	161618376	bimA	BCAN_A0406	-	protein bimA
386	 57.07	0	407403..408329	+	308	161618377	glyQ	BCAN_A0407	-	glycyl-tRNA synthetase subunit alpha
387	 53.66	0	408326..408448	+	40	161618378	-	BCAN_A0408	-	hypothetical protein
388	 60.07	0	408448..410781	+	777	161618379	glyS	BCAN_A0409	-	glycyl-tRNA synthetase subunit beta
389	 64.92	+1	410920..411891	+	323	161618380	-	BCAN_A0410	-	Sua5/YciO/YrdC/YwlC family protein
390	 59.02	0	411917..413329	+	470	161618381	-	BCAN_A0411	-	hypothetical protein
391	 52.52	-1	413367..413684	-	105	161618382	-	BCAN_A0412	-	plasmid stabilization system protein
392	 54.41	0	413681..413941	-	86	161618383	-	BCAN_A0413	-	CopG-like DNA-binding
393	 46.01	-2	414050..414262	-	70	161618384	-	BCAN_A0414	-	hypothetical protein
394	 62.08	+1	414252..414818	+	188	161618385	-	BCAN_A0415	-	hypothetical protein
395	 60.56	0	414961..415713	-	250	161618386	-	BCAN_A0416	-	enoyl-CoA hydratase
396	 61.10	0	415716..417494	-	592	161618387	-	BCAN_A0417	-	acyl-CoA dehydrogenase domain-containing protein
397	 57.68	0	417812..418957	+	381	161618388	-	BCAN_A0418	-	diguanylate cyclase
398	 61.14	0	418975..420258	-	427	161618389	purD	BCAN_A0419	-	phosphoribosylamine--glycine ligase
399	 61.18	0	420403..421404	+	333	161618390	ubiA	BCAN_A0420	-	prenyltransferase
400	 60.13	0	421444..422055	-	203	161618391	pdxH	BCAN_A0421	-	pyridoxamine 5'-phosphate oxidase
401	 56.48	0	422329..422799	+	156	161618392	-	BCAN_A0422	-	hypothetical protein
402	 60.19	0	422944..423885	+	313	161618393	dnaJ	BCAN_A0423	-	chaperone protein dnaJ
403	 56.78	0	424029..424847	+	272	161618394	fabI	BCAN_A0424	-	enoyl-(acyl carrier protein) reductase
404	 58.56	0	425903..426013	+	36	161618395	-	BCAN_A0427	-	cold shock protein
405	 49.33	-1	426111..426260	-	49	161618396	-	BCAN_A0428	-	hypothetical protein
406	 55.87	0	426483..426695	+	70	161618397	-	BCAN_A0429	-	hypothetical protein
407	 60.35	0	426772..427452	+	226	161618398	-	BCAN_A0430	-	hypothetical protein
408	 50.00	-1	427597..427848	-	83	161618399	-	BCAN_A0431	-	hypothetical protein
409	 61.00	0	428123..429217	+	364	161618400	aroC	BCAN_A0432	-	chorismate synthase
410	 60.30	0	429353..430468	+	371	161618401	ribB	BCAN_A0433	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
411	 58.15	0	430684..431634	+	316	161618402	-	BCAN_A0434	-	histone deacetylase superfamily protein
412	 56.86	0	431639..431893	+	84	161618403	xseB	BCAN_A0435	-	exodeoxyribonuclease VII small subunit
413	 57.61	0	431900..432418	-	172	161618404	-	BCAN_A0436	-	SNARE associated Golgi protein
414	 52.87	-1	432660..432920	-	86	161618405	ymgE	BCAN_A0437	-	transglycosylase-associated protein
415	 64.13	+1	433083..433634	+	183	161618406	-	BCAN_A0438	-	hypothetical protein
416	 61.05	0	433838..434710	+	290	161618407	-	BCAN_A0439	-	pirin domain-containing protein
417	 62.11	+1	434853..436784	+	643	161618408	dxs	BCAN_A0440	-	1-deoxy-D-xylulose-5-phosphate synthase
418	 61.81	+1	436790..437551	+	253	161618409	-	BCAN_A0441	-	hemolysin A
419	 63.70	+1	437548..438795	+	415	161618410	rumA	BCAN_A0442	-	23S ribosomal RNA (uracil-5-)-methyltransferase rumA
420	 57.71	0	438939..439541	-	200	161618411	-	BCAN_A0443	-	hypothetical protein
421	 51.37	-1	439671..440036	+	121	161618412	-	BCAN_A0444	-	hypothetical protein
422	 61.81	+1	440223..441437	+	404	161618413	-	BCAN_A0445	-	peptidoglycan-binding LysM
423	 58.29	0	441640..443526	+	628	161618414	-	BCAN_A0446	-	heavy metal tolerance protein precursor
424	 59.66	0	443631..444329	+	232	161618415	-	BCAN_A0447	-	phosphatidylserine decarboxylase
425	 59.26	0	444334..445170	+	278	161618416	pssA	BCAN_A0448	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
426	 61.00	0	445255..445995	-	246	161618417	-	BCAN_A0449	-	short-chain dehydrogenase/reductase SDR
427	 59.26	0	446064..447521	-	485	161618418	purF	BCAN_A0450	-	amidophosphoribosyltransferase
428	 48.99	-1	447543..447740	+	65	161618419	-	BCAN_A0451	-	hypothetical protein
429	 58.20	0	447836..448414	-	192	161618420	-	BCAN_A0452	-	colicin V production protein
430	 62.18	+1	448540..449943	-	467	161618421	radA	BCAN_A0453	-	DNA repair protein RadA
431	 58.63	0	449971..451476	-	501	161618422	dnaB	BCAN_A0454	-	replicative DNA helicase
432	 58.25	0	453327..453896	-	189	161618423	rplI	BCAN_A0457	-	50S ribosomal protein L9
433	 61.83	+1	453926..454897	-	323	161618424	-	BCAN_A0458	-	hypothetical protein
434	 58.63	0	455048..455296	-	82	161618425	rpsR	BCAN_A0459	-	30S ribosomal protein S18
435	 61.74	+1	455299..455745	-	148	161618426	rpsF	BCAN_A0460	-	30S ribosomal protein S6
436	 54.72	0	455770..456129	-	119	161618427	-	BCAN_A0461	-	hypothetical protein
437	 61.69	+1	456151..457095	+	314	161618428	fabD	BCAN_A0462	-	malonyl CoA-acyl carrier protein transacylase
438	 59.08	0	457165..457902	+	245	161618429	fabG	BCAN_A0463	-	3-ketoacyl-(acyl-carrier-protein) reductase NodG
439	 53.59	0	458176..458412	+	78	161618430	acpP	BCAN_A0464	-	acyl carrier protein
440	 57.95	0	458416..458679	+	87	161618431	-	BCAN_A0465	-	hypothetical protein
441	 61.84	+1	458736..459998	+	420	161618432	-	BCAN_A0466	-	3-oxoacyl-(acyl carrier protein) synthase II
442	 59.08	0	460223..461461	+	412	161618433	-	BCAN_A0467	-	hypothetical protein
443	 61.44	+1	461646..462545	+	299	161618434	-	BCAN_A0468	-	hypothetical protein
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.