IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
180	 59.24	0	194438..194962	+	174	161618171	-	BCAN_A0188	-	hypothetical protein
181	 53.40	0	195030..195323	+	97	161618172	-	BCAN_A0189	-	stress responsive alpha-beta barrel domain-containing protein
182	 59.07	0	195324..195902	-	192	161618173	-	BCAN_A0190	-	methylated-DNA-[protein]-cysteine S-methyltransferase
183	 56.91	0	196160..196405	+	81	161618174	-	BCAN_A0191	-	hypothetical protein
184	 61.28	0	196458..196847	-	129	161618175	-	BCAN_A0192	-	BA14K family protein
185	 59.22	0	197161..200946	+	1261	161618176	metH	BCAN_A0193	-	B12-dependent methionine synthase
186	 48.81	-2	200910..201077	-	55	161618177	-	BCAN_A0194	-	hypothetical protein
187	 51.32	-1	201258..201974	+	238	161618178	solR	BCAN_A0195	-	transcriptional activator protein solR
188	 59.52	0	202089..203459	+	456	161618179	-	BCAN_A0196	-	aminotransferase
189	 55.70	0	203865..204767	+	300	161618180	cysD	BCAN_A0197	-	sulfate adenylyltransferase subunit 2
190	 58.24	0	204767..206701	+	644	161618181	cysN	BCAN_A0198	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
191	 61.58	+1	206704..207549	+	281	161618182	cysQ	BCAN_A0199	-	3'(2'),5'-bisphosphate nucleotidase
192	 55.64	0	207811..208617	-	268	161618183	-	BCAN_A0201	-	Crp/FNR family transcriptional regulator
193	 58.33	0	209878..210669	+	263	161618184	-	BCAN_A0203	-	DeoR family transcriptional regulator
194	 60.12	0	210751..212262	+	503	161618185	glpD	BCAN_A0204	-	glycerol-3-phosphate dehydrogenase
195	 64.44	+1	212481..213467	+	328	161618186	-	BCAN_A0205	-	Fis family transcriptional regulator
196	 57.91	0	213599..215116	+	505	161618187	thcA	BCAN_A0206	-	EPTC-inducible aldehyde dehydrogenase
197	 59.03	0	215597..216631	+	344	161618188	adhT	BCAN_A0207	-	alcohol dehydrogenase
198	 60.70	0	216653..217054	+	133	161618189	-	BCAN_A0208	-	hypothetical protein
199	 59.12	0	219583..220152	+	189	161618190	-	BCAN_A0211	-	hypothetical protein
200	 59.07	0	220455..221888	+	477	161618191	aldHT	BCAN_A0212	-	aldehyde dehydrogenase
201	 63.45	+1	221933..222709	-	258	161618192	-	BCAN_A0213	-	binding-protein-dependent transport systems inner membrane component
202	 58.80	0	222706..223404	-	232	161618193	-	BCAN_A0214	-	TenA family transcription regulator
203	 57.48	0	223401..224369	-	322	161618194	-	BCAN_A0215	-	NMT1/THI5-like domain-containing protein
204	 61.11	0	224393..225004	-	203	161618195	thiE	BCAN_A0216	-	thiamine-phosphate pyrophosphorylase
205	 62.52	+1	225001..225771	-	256	161618196	thiG	BCAN_A0217	-	thiazole synthase
206	 58.08	0	225773..225970	-	65	161618197	thiS	BCAN_A0218	-	thiamine biosynthesis protein ThiS
207	 63.28	+1	225967..226971	-	334	161618198	thiO	BCAN_A0219	-	glycine oxidase ThiO
208	 62.79	+1	226971..227846	-	291	161618199	thiD	BCAN_A0220	-	phosphomethylpyrimidine kinase
209	 57.77	0	228275..230386	+	703	161618200	-	BCAN_A0222	-	diguanylate cyclase
210	 62.19	+1	230485..232965	+	826	161618201	-	BCAN_A0223	-	heavy metal translocating P-type ATPase
211	 58.67	0	232945..233394	-	149	161618202	cueR	BCAN_A0224	-	Cu(I)-responsive transcriptional regulator
212	 61.18	0	233500..234246	-	248	161618203	-	BCAN_A0225	-	binding-protein-dependent transport systems inner membrane component
213	 63.47	+1	234243..235181	-	312	161618204	-	BCAN_A0226	-	ABC transporter related
214	 62.19	+1	235178..236338	-	386	161618205	-	BCAN_A0227	-	binding-protein-dependent transport systems inner membrane component
215	 55.99	0	236411..237478	-	355	161618206	-	BCAN_A0228	-	substrate-binding region of ABC-type glycine betaine transport system
216	 45.95	-2	237511..238176	-	221	161618207	-	BCAN_A0229	-	hypothetical protein
217	 60.58	0	238466..239731	-	421	161618208	gdhA	BCAN_A0230	-	glutamate dehydrogenase
218	 51.19	-1	239922..240089	+	55	161618209	-	BCAN_A0231	-	hypothetical protein
219	 59.73	0	240058..241311	+	417	161618210	-	BCAN_A0232	-	sarcosine oxidase beta subunit family protein
220	 58.82	0	241330..241635	+	101	161618211	-	BCAN_A0233	-	sarcosine oxidase delta subunit family protein
221	 61.57	+1	241635..244634	+	999	161618212	-	BCAN_A0234	-	sarcosine oxidase alpha subunit family protein
222	 57.66	0	244645..245199	+	184	161618213	-	BCAN_A0235	-	sarcosine oxidase gamma subunit
223	 59.72	0	245252..246100	-	282	161618214	-	BCAN_A0236	-	amidohydrolase 2
224	 60.25	0	246158..246952	-	264	161618215	-	BCAN_A0237	-	regulatory protein IclR
225	 57.73	0	247110..248429	+	439	161618216	-	BCAN_A0238	-	extracellular solute-binding protein
226	 58.33	0	248490..249413	+	307	161618217	-	BCAN_A0239	-	binding-protein-dependent transport systems inner membrane component
227	 59.36	0	249416..250291	+	291	161618218	-	BCAN_A0240	-	binding-protein-dependent transport systems inner membrane component
228	 60.44	0	250299..251390	+	363	161618219	lacK	BCAN_A0241	-	lactose transport ATP-binding protein lacK
229	 59.70	0	251393..252511	+	372	161618220	mdlA	BCAN_A0242	-	mandelate racemase
230	 50.72	-1	252508..252852	+	114	161618221	-	BCAN_A0243	-	hypothetical protein
231	 60.65	0	252845..253924	+	359	161618222	-	BCAN_A0244	-	oxidoreductase domain-containing protein
232	 61.50	+1	254029..254763	+	244	161618223	polS	BCAN_A0245	-	sorbitol dehydrogenase
233	 58.98	0	254804..255649	+	281	161618224	-	BCAN_A0246	-	fumarylacetoacetate (FAA) hydrolase
234	 58.53	0	255663..256940	+	425	161618225	-	BCAN_A0247	-	mandelate racemase/muconate lactonizing protein
235	 48.01	-2	257339..257890	-	183	161618226	-	BCAN_A0248	-	hypothetical protein
236	 46.38	-2	258719..258856	-	45	161618227	-	BCAN_A0249	-	hypothetical protein
237	 59.72	0	259163..259378	-	71	161618228	-	BCAN_A0251	-	zinc-binding protein
238	 61.24	0	259388..260014	-	208	161618229	maf	BCAN_A0252	-	Maf-like protein
239	 52.51	-1	260048..260266	-	72	161618230	infA	BCAN_A0253	-	translation initiation factor IF-1
240	 58.65	0	260378..260851	-	157	161618231	-	BCAN_A0254	-	protein tyrosine phosphatase
241	 59.01	0	260858..261340	-	160	161618232	-	BCAN_A0255	-	hypothetical protein
242	 61.87	+1	261347..262639	-	430	161618233	hisD	BCAN_A0256	-	histidinol dehydrogenase
243	 55.33	0	262714..263154	-	146	161618234	-	BCAN_A0257	-	hypothetical protein
244	 61.01	0	263425..264714	-	429	161618235	murA	BCAN_A0258	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
245	 59.44	0	264937..265116	-	59	161618236	-	BCAN_A0259	-	hypothetical protein
246	 55.63	0	265419..267185	+	588	161618237	-	BCAN_A0261	-	hypothetical protein
247	 56.26	0	267280..267702	+	140	161618238	-	BCAN_A0262	-	hypothetical protein
248	 56.41	0	267715..267909	+	64	161618239	-	BCAN_A0263	-	hypothetical protein
249	 58.09	0	268501..269118	+	205	161618240	cin	BCAN_A0264	-	DNA-invertase
250	 54.73	0	269676..271040	+	454	161618241	-	BCAN_A0265	-	hypothetical protein
251	 55.56	0	271628..271807	+	59	161618242	-	BCAN_A0266	-	hypothetical protein
252	 56.49	0	272281..272565	-	94	161618243	-	BCAN_A0267	-	hypothetical protein
253	 55.94	0	272679..272939	-	86	161618244	-	BCAN_A0268	-	hypothetical protein
254	 52.56	-1	273023..273412	+	129	161618245	-	BCAN_A0269	-	hypothetical protein
255	 61.92	+1	274004..274846	+	280	161618246	ureD	BCAN_A0270	-	urease accessory protein ureD
256	 59.74	0	274999..275301	+	100	161618247	ureA	BCAN_A0271	-	urease subunit gamma
257	 57.84	0	275468..275773	+	101	161618248	ureB	BCAN_A0272	-	urease subunit beta
258	 60.30	0	275792..277504	+	570	161618249	ureC	BCAN_A0273	-	urease subunit alpha
259	 59.10	0	277520..278008	+	162	161618250	ureE	BCAN_A0274	-	urease accessory protein UreE
260	 63.17	+1	277980..278666	+	228	161618251	ureF	BCAN_A0275	-	urease accessory protein ureF
261	 57.26	0	278663..279289	+	208	161618252	ureG	BCAN_A0276	-	urease accessory protein UreG
262	 58.73	0	279646..281271	-	541	161618253	luxN	BCAN_A0278	-	autoinducer 1 sensor kinase/phosphatase luxN
263	 54.25	0	281288..281593	-	101	161618254	-	BCAN_A0279	-	hypothetical protein
264	 60.68	0	281556..282707	+	383	161618255	-	BCAN_A0280	-	RND family efflux transporter MFP subunit
265	 60.31	0	282722..285853	+	1043	161618256	-	BCAN_A0281	-	acriflavin resistance protein
266	 59.93	0	285976..287445	-	489	161618257	hydA	BCAN_A0282	-	dihydropyrimidinase
267	 59.86	0	287497..288744	-	415	161618258	-	BCAN_A0283	-	allantoate amidohydrolase
268	 55.12	0	288963..289646	+	227	161618259	-	BCAN_A0284	-	TetR family transcriptional regulator
269	 61.28	0	289643..290032	+	129	161618260	-	BCAN_A0285	-	NUDIX hydrolase
270	 60.87	0	290077..291387	-	436	161618261	-	BCAN_A0286	-	dihydropyrimidine dehydrogenase
271	 60.86	0	291391..292887	-	498	161618262	-	BCAN_A0287	-	putative oxidoreductase
272	 54.62	0	292764..293012	+	82	161618263	-	BCAN_A0288	-	hypothetical protein
273	 56.29	0	293075..293527	-	150	161618264	-	BCAN_A0289	-	carbon monoxide dehydrogenase subunit G
274	 60.67	0	293678..295327	+	549	161618265	pgi	BCAN_A0290	-	glucose-6-phosphate isomerase
275	 58.76	0	295563..296624	+	353	161618266	-	BCAN_A0291	-	succinylglutamate desuccinylase/aspartoacylase
276	 60.27	0	296621..297370	+	249	161618267	-	BCAN_A0292	-	HAD family hydrolase
277	 58.99	0	297343..298215	-	290	161618268	-	BCAN_A0293	-	hypothetical protein
278	 59.39	0	298241..299986	-	581	161618269	-	BCAN_A0294	-	acyl-CoA synthetase
279	 56.35	0	300337..300966	-	209	161618270	ttgR	BCAN_A0295	-	HTH-type transcriptional regulator ttgR
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.