IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1832	 56.86	0	1837973..1838431	-	152	161619823	-	BCAN_A1949	-	hypothetical protein
1833	 60.43	0	1838688..1840097	-	469	161619824	leuC	BCAN_A1950	-	isopropylmalate isomerase large subunit
1834	 58.45	0	1840308..1840745	-	145	161619825	rplS	BCAN_A1951	-	50S ribosomal protein L19
1835	 56.35	0	1841037..1842500	+	487	161619826	-	BCAN_A1952	-	hypothetical protein
1836	 60.32	0	1842653..1842904	-	83	161619827	-	BCAN_A1953	-	hypothetical protein
1837	 59.12	0	1842901..1843311	-	136	161619828	-	BCAN_A1954	-	hypothetical protein
1838	 59.23	0	1843304..1843666	-	120	161619829	-	BCAN_A1955	-	hypothetical protein
1839	 55.86	0	1843663..1843986	-	107	161619830	-	BCAN_A1956	-	NIPSNAP family protein
1840	 59.01	0	1844057..1844722	+	221	161619831	-	BCAN_A1957	-	ArsR family transcriptional regulator
1841	 61.36	+1	1844857..1845591	-	244	161619832	trmD	BCAN_A1958	-	tRNA (guanine-N(1)-)-methyltransferase
1842	 58.07	0	1845588..1846157	-	189	161619833	rimM	BCAN_A1959	-	16S rRNA-processing protein
1843	 62.76	+1	1846381..1847328	+	315	161619834	xerC	BCAN_A1960	-	site-specific tyrosine recombinase XerC
1844	 56.49	0	1847382..1848383	+	333	161619835	-	BCAN_A1961	-	GumN family protein
1845	 58.26	0	1848587..1849990	-	467	161619836	lpdA	BCAN_A1962	-	dihydrolipoamide dehydrogenase
1846	 53.59	0	1850159..1850701	-	180	161619837	-	BCAN_A1963	-	hypothetical protein
1847	 55.56	0	1850772..1851410	-	212	161619838	-	BCAN_A1964	-	lysine exporter protein LysE/YggA
1848	 60.14	0	1851452..1851865	-	137	161619839	-	BCAN_A1965	-	hypothetical protein
1849	 61.53	+1	1851875..1853101	-	408	161619840	sucB	BCAN_A1966	-	dihydrolipoamide acetyltransferase
1850	 59.37	0	1853163..1856177	-	1004	161619841	sucA	BCAN_A1967	-	alpha-ketoglutarate decarboxylase
1851	 56.67	0	1856314..1856463	+	49	161619842	-	BCAN_A1968	-	hypothetical protein
1852	 60.69	0	1856453..1857355	-	300	161619843	-	BCAN_A1969	-	succinyl-CoA synthetase subunit alpha
1853	 57.56	0	1857359..1858555	-	398	161619844	-	BCAN_A1970	-	succinyl-CoA synthetase subunit beta
1854	 61.68	+1	1858662..1859624	-	320	161619845	mdh	BCAN_A1971	-	malate dehydrogenase
1855	 51.85	-1	1859744..1859986	-	80	161619846	-	BCAN_A1972	-	hypothetical protein
1856	 57.73	0	1860063..1861226	-	387	161619847	-	BCAN_A1973	-	AFG1-like ATPase
1857	 63.48	+1	1861346..1861879	-	177	161619848	-	BCAN_A1974	-	hypothetical protein
1858	 50.49	-1	1862009..1862212	-	67	161619849	-	BCAN_A1975	-	hypothetical protein
1859	 63.16	+1	1862243..1863154	+	303	161619850	dapF	BCAN_A1976	-	diaminopimelate epimerase
1860	 60.05	0	1863154..1864437	+	427	161619851	-	BCAN_A1977	-	MiaB-like tRNA modifying enzyme
1861	 60.66	0	1864459..1865856	+	465	161619852	ftsY	BCAN_A1978	-	signal recognition particle-docking protein FtsY
1862	 56.11	0	1865856..1866518	+	220	161619853	ispZ	BCAN_A1979	-	intracellular septation protein A
1863	 58.24	0	1866542..1867324	+	260	161619854	gloB	BCAN_A1980	-	hydroxyacylglutathione hydrolase
1864	 54.47	0	1867371..1867862	+	163	161619855	-	BCAN_A1981	-	hypothetical protein
1865	 56.21	0	1867927..1868232	-	101	161619856	-	BCAN_A1982	-	hypothetical protein
1866	 59.71	0	1868344..1868760	-	138	161619857	-	BCAN_A1983	-	mutator MutT protein
1867	 59.60	0	1868757..1869548	-	263	161619858	-	BCAN_A1984	-	GCN5-related N-acetyltransferase
1868	 60.95	0	1869606..1870847	-	413	161619859	argJ	BCAN_A1985	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1869	 52.78	-1	1871081..1871224	-	47	161619860	-	BCAN_A1986	-	hypothetical protein
1870	 57.93	0	1871285..1872280	-	331	161619861	surA	BCAN_A1987	-	chaperone surA precursor
1871	 47.62	-2	1872408..1872575	-	55	161619862	-	BCAN_A1988	-	hypothetical protein
1872	 58.62	0	1872619..1875339	+	906	161619863	secA	BCAN_A1989	-	preprotein translocase subunit SecA
1873	 45.39	-2	1875367..1875507	+	46	161619864	-	BCAN_A1990	-	hypothetical protein
1874	 59.05	0	1876116..1877402	+	428	161619865	-	BCAN_A1991	-	hypothetical protein
1875	 55.54	0	1877571..1879205	+	544	161619866	-	BCAN_A1992	-	sulfatase
1876	 46.08	-2	1879559..1879660	+	33	161619867	-	BCAN_A1993	-	hypothetical protein
1877	 59.04	0	1880373..1881356	-	327	161619868	oxyR	BCAN_A1995	-	transcriptional regulator
1878	 42.47	-2	1881396..1881581	-	61	161619869	-	BCAN_A1996	-	hypothetical protein
1879	 50.48	-1	1881499..1881603	+	34	161619870	-	BCAN_A1997	-	hypothetical protein
1880	 58.16	0	1881647..1882492	+	281	161619871	patH	BCAN_A1998	-	amino-acid ABC transporter-binding protein patH precurso
1881	 58.63	0	1882432..1883277	+	281	161619872	-	BCAN_A1999	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1882	 58.09	0	1883282..1884004	+	240	161619873	-	BCAN_A2000	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1883	 59.80	0	1884001..1884816	+	271	161619874	occP	BCAN_A2001	-	octopine permease ATP-binding protein P
1884	 60.45	0	1884837..1885850	+	337	161619875	pah	BCAN_A2002	-	proclavaminate amidinohydrolase
1885	 58.61	0	1885859..1887310	+	483	161619876	aspA	BCAN_A2003	-	aspartate ammonia-lyase
1886	 57.54	0	1887294..1888049	+	251	161619877	bztD	BCAN_A2004	-	glutamate/glutamine/aspartate/asparagine transport ATP-binding protein bztD
1887	 58.86	0	1888058..1889056	+	332	161619878	ansA	BCAN_A2005	-	L-asparaginase
1888	 51.90	-1	1889193..1889876	-	227	161619879	-	BCAN_A2006	-	GntR family transcriptional regulator
1889	 56.36	0	1889900..1890889	-	329	161619880	ansA	BCAN_A2007	-	L-asparaginase
1890	 54.13	0	1890967..1892274	+	435	161619881	-	BCAN_A2008	-	major facilitator transporter
1891	 56.21	0	1892761..1892913	-	50	161619882	-	BCAN_A2009	-	hypothetical protein
1892	 59.03	0	1892960..1894243	-	427	161619883	mdeA	BCAN_A2010	-	methionine gamma-lyase
1893	 57.78	0	1894423..1894872	-	149	161619884	-	BCAN_A2011	-	UspA domain-containing protein
1894	 57.86	0	1895092..1896102	+	336	161619885	cysK	BCAN_A2012	-	cysteine synthase A
1895	 50.60	-1	1896184..1896432	-	82	161619886	-	BCAN_A2013	-	hypothetical protein
1896	 57.19	0	1896592..1897467	-	291	161619887	mmgB	BCAN_A2014	-	3-hydroxybutyryl-CoA dehydrogenase
1897	 60.65	0	1897951..1898880	-	309	161619888	-	BCAN_A2015	-	electron transfer flavoprotein, alpha subunit
1898	 58.37	0	1899033..1899779	-	248	161619889	etfB	BCAN_A2016	-	electron transfer flavoprotein subunit beta
1899	 59.51	0	1900115..1900813	+	232	161619890	-	BCAN_A2017	-	exsB protein
1900	 56.28	0	1900813..1901178	+	121	161619891	-	BCAN_A2018	-	hypothetical protein
1901	 58.07	0	1901178..1901933	+	251	161619892	-	BCAN_A2019	-	radical SAM domain-containing protein
1902	 61.05	0	1902070..1902657	-	195	161619893	-	BCAN_A2020	-	ATP:cob(I)alamin adenosyltransferase
1903	 54.41	0	1902659..1902862	-	67	161619894	-	BCAN_A2021	-	hypothetical protein
1904	 60.14	0	1902892..1903734	-	280	161619895	vdlC	BCAN_A2022	-	short chain dehydrogenase
1905	 56.68	0	1903892..1904752	+	286	161619896	yihY	BCAN_A2023	-	YihY family protein
1906	 60.91	0	1904770..1905255	+	161	161619897	-	BCAN_A2024	-	hypothetical protein
1907	 58.58	0	1905263..1905979	-	238	161619898	-	BCAN_A2025	-	redoxin domain-containing protein
1908	 59.60	0	1906033..1907433	+	466	161619899	argH	BCAN_A2026	-	argininosuccinate lyase
1909	 58.20	0	1907538..1907726	+	62	161619900	-	BCAN_A2027	-	hypothetical protein
1910	 61.06	0	1907754..1909019	+	421	161619901	lysA	BCAN_A2028	-	diaminopimelate decarboxylase
1911	 61.07	0	1909118..1911763	+	881	161619902	-	BCAN_A2029	-	hypothetical protein
1912	 55.49	0	1911803..1912339	-	178	161619903	hpt	BCAN_A2030	-	hypoxanthine phosphoribosyltransferase
1913	 62.82	+1	1912488..1913267	+	259	161619904	-	BCAN_A2031	-	ATP synthase subunits region ORF 4
1914	 59.08	0	1913412..1914518	+	368	161619905	hisC	BCAN_A2032	-	histidinol-phosphate aminotransferase
1915	 60.77	0	1914523..1915488	+	321	161619906	-	BCAN_A2033	-	cyclohexadienyl dehydrogenase
1916	 57.65	0	1915457..1916476	-	339	161619907	-	BCAN_A2034	-	hypothetical protein
1917	 48.53	-2	1916496..1916699	-	67	161619908	-	BCAN_A2035	-	hypothetical protein
1918	 58.11	0	1916688..1917248	+	186	161619909	-	BCAN_A2036	-	cation transport regulator-like protein 1
1919	 53.26	0	1917581..1917871	+	96	161619910	-	BCAN_A2038	-	protein of unknown function YGGT
1920	 55.18	0	1918042..1918572	-	176	161619911	ppa	BCAN_A2039	-	inorganic pyrophosphatase
1921	 58.88	0	1918725..1919507	-	260	161619912	-	BCAN_A2040	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1922	 56.55	0	1919686..1920219	-	177	161619913	-	BCAN_A2041	-	hypothetical protein
1923	 60.88	0	1920585..1921586	-	333	161619914	-	BCAN_A2042	-	hypothetical protein
1924	 60.15	0	1921579..1922238	-	219	161619915	ftsE	BCAN_A2043	-	cell division ATP-binding protein FtsE
1925	 53.11	0	1922243..1922419	-	58	161619916	-	BCAN_A2044	-	hypothetical protein
1926	 54.58	0	1922547..1922819	-	90	161619917	-	BCAN_A2045	-	hypothetical protein
1927	 56.29	0	1922596..1922913	+	105	161619918	-	BCAN_A2046	-	hypothetical protein
1928	 58.37	0	1923297..1923983	+	228	161619919	aqpZ	BCAN_A2047	-	aquaporin Z
1929	 55.03	0	1924364..1925059	+	231	161619920	-	BCAN_A2048	-	outer membrane lipoprotein carrier protein LolA
1930	 58.24	0	1925162..1925968	+	268	161619921	-	BCAN_A2049	-	exodeoxyribonuclease III (xth)
1931	 61.69	+1	1925974..1926435	-	153	161619922	-	BCAN_A2050	-	cAMP-dependent protein kinase regulatory subunit
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.