IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
138	 59.51	0	153596..154168	-	190	161618129	-	BCAN_A0145	-	HIRA-interacting protein 5
139	 60.93	0	154277..154816	-	179	161618130	-	BCAN_A0146	-	UspA domain-containing protein
140	 59.33	0	154823..155980	-	385	161618131	trpS	BCAN_A0147	-	tryptophanyl-tRNA synthetase
141	 59.94	0	155987..157576	-	529	161618132	mviN	BCAN_A0148	-	integral membrane protein MviN
142	 58.47	0	157590..160394	-	934	161618133	glnD	BCAN_A0149	-	PII uridylyl-transferase
143	 45.83	-2	160460..160555	+	31	161618134	-	BCAN_A0150	-	hypothetical protein
144	 60.56	0	162966..165698	+	910	161618135	mutS	BCAN_A0152	-	DNA mismatch repair protein
145	 58.39	0	166004..166897	-	297	161618136	-	BCAN_A0153	-	hypothetical protein
146	 52.80	-1	167172..167654	-	160	161618137	lspA	BCAN_A0154	-	signal peptidase II
147	 60.18	0	167656..168549	-	297	161618138	-	BCAN_A0155	-	tRNA/rRNA methyltransferase (SpoU)
148	 61.08	0	168546..169691	-	381	161618139	-	BCAN_A0156	-	hypothetical protein
149	 58.95	0	169804..170127	-	107	161618140	-	BCAN_A0157	-	hypothetical protein
150	 57.19	0	170137..170421	-	94	161618141	ihfB	BCAN_A0158	-	integration host factor subunit beta
151	 60.06	0	170468..171451	-	327	161618142	sppA	BCAN_A0159	-	signal peptide peptidase SppA, 36K type
152	 56.02	0	171913..172635	+	240	161618143	-	BCAN_A0160	-	hypothetical protein
153	 60.98	0	172958..173572	+	204	161618144	-	BCAN_A0161	-	hypothetical protein
154	 59.95	0	173584..174417	+	277	161618145	-	BCAN_A0162	-	ABC transporter ATP-binding protein
155	 57.75	0	174713..176215	+	500	161618146	rpoN	BCAN_A0163	-	RNA polymerase factor sigma-54
156	 46.99	-2	176364..176729	-	121	161618147	-	BCAN_A0164	-	hypothetical protein
157	 58.92	0	176965..177558	+	197	161618148	yfiA	BCAN_A0165	-	ribosomal subunit interface protein
158	 58.49	0	177661..178125	+	154	161618149	ptsN	BCAN_A0166	-	PTS IIA-like nitrogen-regulatory protein PtsN
159	 58.54	0	178206..178451	-	81	161618150	-	BCAN_A0167	-	hypothetical protein
160	 56.50	0	178557..178979	-	140	161618151	hspD	BCAN_A0168	-	small heat shock protein hspD
161	 49.25	-1	179070..179270	-	66	161618152	-	BCAN_A0169	-	hypothetical protein
162	 58.05	0	179251..179865	-	204	161618153	-	BCAN_A0170	-	hypothetical protein
163	 60.51	0	179853..180599	+	248	161618154	nth	BCAN_A0171	-	endonuclease III
164	 58.40	0	180640..181353	-	237	161618155	-	BCAN_A0172	-	CysZ-like protein
165	 59.00	0	181350..181610	-	86	161618156	-	BCAN_A0173	-	hypothetical protein
166	 59.92	0	181613..182605	+	330	161618157	-	BCAN_A0174	-	fructokinase-2
167	 59.97	0	182624..183280	-	218	161618158	-	BCAN_A0175	-	hypothetical protein
168	 59.45	0	183413..184105	-	230	161618159	grpE	BCAN_A0176	-	protein grpE
169	 59.85	0	184211..185281	-	356	161618160	hrcA	BCAN_A0177	-	heat-inducible transcription repressor
170	 62.76	+1	185503..186219	+	238	161618161	rph	BCAN_A0178	-	ribonuclease PH
171	 57.78	0	186393..186797	+	134	161618162	-	BCAN_A0179	-	glyoxalase/bleomycin resistance protein/dioxygenase
172	 59.58	0	186800..187462	+	220	161618163	rdgB	BCAN_A0180	-	putative deoxyribonucleotide triphosphate pyrophosphatase
173	 60.58	0	187459..188673	+	404	161618164	-	BCAN_A0181	-	coproporphyrinogen III oxidase
174	 62.28	+1	188685..189596	+	303	161618165	-	BCAN_A0182	-	hypothetical protein
175	 61.68	+1	189593..189973	+	126	161618166	-	BCAN_A0183	-	hypothetical protein
176	 63.94	+1	190199..191626	+	475	161618167	cobA	BCAN_A0184	-	uroporphyrin-III C-methyltransferase
177	 62.71	+1	191644..191946	+	100	161618168	-	BCAN_A0185	-	hypothetical protein
178	 57.51	0	191967..193637	+	556	161618169	-	BCAN_A0186	-	sulfite reductase (ferredoxin)
179	 63.37	+1	193627..194385	+	252	161618170	cysH	BCAN_A0187	-	phosphoadenosine phosphosulfate reductase
180	 59.24	0	194438..194962	+	174	161618171	-	BCAN_A0188	-	hypothetical protein
181	 53.40	0	195030..195323	+	97	161618172	-	BCAN_A0189	-	stress responsive alpha-beta barrel domain-containing protein
182	 59.07	0	195324..195902	-	192	161618173	-	BCAN_A0190	-	methylated-DNA-[protein]-cysteine S-methyltransferase
183	 56.91	0	196160..196405	+	81	161618174	-	BCAN_A0191	-	hypothetical protein
184	 61.28	0	196458..196847	-	129	161618175	-	BCAN_A0192	-	BA14K family protein
185	 59.22	0	197161..200946	+	1261	161618176	metH	BCAN_A0193	-	B12-dependent methionine synthase
186	 48.81	-2	200910..201077	-	55	161618177	-	BCAN_A0194	-	hypothetical protein
187	 51.32	-1	201258..201974	+	238	161618178	solR	BCAN_A0195	-	transcriptional activator protein solR
188	 59.52	0	202089..203459	+	456	161618179	-	BCAN_A0196	-	aminotransferase
189	 55.70	0	203865..204767	+	300	161618180	cysD	BCAN_A0197	-	sulfate adenylyltransferase subunit 2
190	 58.24	0	204767..206701	+	644	161618181	cysN	BCAN_A0198	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
191	 61.58	+1	206704..207549	+	281	161618182	cysQ	BCAN_A0199	-	3'(2'),5'-bisphosphate nucleotidase
192	 55.64	0	207811..208617	-	268	161618183	-	BCAN_A0201	-	Crp/FNR family transcriptional regulator
193	 58.33	0	209878..210669	+	263	161618184	-	BCAN_A0203	-	DeoR family transcriptional regulator
194	 60.12	0	210751..212262	+	503	161618185	glpD	BCAN_A0204	-	glycerol-3-phosphate dehydrogenase
195	 64.44	+1	212481..213467	+	328	161618186	-	BCAN_A0205	-	Fis family transcriptional regulator
196	 57.91	0	213599..215116	+	505	161618187	thcA	BCAN_A0206	-	EPTC-inducible aldehyde dehydrogenase
197	 59.03	0	215597..216631	+	344	161618188	adhT	BCAN_A0207	-	alcohol dehydrogenase
198	 60.70	0	216653..217054	+	133	161618189	-	BCAN_A0208	-	hypothetical protein
199	 59.12	0	219583..220152	+	189	161618190	-	BCAN_A0211	-	hypothetical protein
200	 59.07	0	220455..221888	+	477	161618191	aldHT	BCAN_A0212	-	aldehyde dehydrogenase
201	 63.45	+1	221933..222709	-	258	161618192	-	BCAN_A0213	-	binding-protein-dependent transport systems inner membrane component
202	 58.80	0	222706..223404	-	232	161618193	-	BCAN_A0214	-	TenA family transcription regulator
203	 57.48	0	223401..224369	-	322	161618194	-	BCAN_A0215	-	NMT1/THI5-like domain-containing protein
204	 61.11	0	224393..225004	-	203	161618195	thiE	BCAN_A0216	-	thiamine-phosphate pyrophosphorylase
205	 62.52	+1	225001..225771	-	256	161618196	thiG	BCAN_A0217	-	thiazole synthase
206	 58.08	0	225773..225970	-	65	161618197	thiS	BCAN_A0218	-	thiamine biosynthesis protein ThiS
207	 63.28	+1	225967..226971	-	334	161618198	thiO	BCAN_A0219	-	glycine oxidase ThiO
208	 62.79	+1	226971..227846	-	291	161618199	thiD	BCAN_A0220	-	phosphomethylpyrimidine kinase
209	 57.77	0	228275..230386	+	703	161618200	-	BCAN_A0222	-	diguanylate cyclase
210	 62.19	+1	230485..232965	+	826	161618201	-	BCAN_A0223	-	heavy metal translocating P-type ATPase
211	 58.67	0	232945..233394	-	149	161618202	cueR	BCAN_A0224	-	Cu(I)-responsive transcriptional regulator
212	 61.18	0	233500..234246	-	248	161618203	-	BCAN_A0225	-	binding-protein-dependent transport systems inner membrane component
213	 63.47	+1	234243..235181	-	312	161618204	-	BCAN_A0226	-	ABC transporter related
214	 62.19	+1	235178..236338	-	386	161618205	-	BCAN_A0227	-	binding-protein-dependent transport systems inner membrane component
215	 55.99	0	236411..237478	-	355	161618206	-	BCAN_A0228	-	substrate-binding region of ABC-type glycine betaine transport system
216	 45.95	-2	237511..238176	-	221	161618207	-	BCAN_A0229	-	hypothetical protein
217	 60.58	0	238466..239731	-	421	161618208	gdhA	BCAN_A0230	-	glutamate dehydrogenase
218	 51.19	-1	239922..240089	+	55	161618209	-	BCAN_A0231	-	hypothetical protein
219	 59.73	0	240058..241311	+	417	161618210	-	BCAN_A0232	-	sarcosine oxidase beta subunit family protein
220	 58.82	0	241330..241635	+	101	161618211	-	BCAN_A0233	-	sarcosine oxidase delta subunit family protein
221	 61.57	+1	241635..244634	+	999	161618212	-	BCAN_A0234	-	sarcosine oxidase alpha subunit family protein
222	 57.66	0	244645..245199	+	184	161618213	-	BCAN_A0235	-	sarcosine oxidase gamma subunit
223	 59.72	0	245252..246100	-	282	161618214	-	BCAN_A0236	-	amidohydrolase 2
224	 60.25	0	246158..246952	-	264	161618215	-	BCAN_A0237	-	regulatory protein IclR
225	 57.73	0	247110..248429	+	439	161618216	-	BCAN_A0238	-	extracellular solute-binding protein
226	 58.33	0	248490..249413	+	307	161618217	-	BCAN_A0239	-	binding-protein-dependent transport systems inner membrane component
227	 59.36	0	249416..250291	+	291	161618218	-	BCAN_A0240	-	binding-protein-dependent transport systems inner membrane component
228	 60.44	0	250299..251390	+	363	161618219	lacK	BCAN_A0241	-	lactose transport ATP-binding protein lacK
229	 59.70	0	251393..252511	+	372	161618220	mdlA	BCAN_A0242	-	mandelate racemase
230	 50.72	-1	252508..252852	+	114	161618221	-	BCAN_A0243	-	hypothetical protein
231	 60.65	0	252845..253924	+	359	161618222	-	BCAN_A0244	-	oxidoreductase domain-containing protein
232	 61.50	+1	254029..254763	+	244	161618223	polS	BCAN_A0245	-	sorbitol dehydrogenase
233	 58.98	0	254804..255649	+	281	161618224	-	BCAN_A0246	-	fumarylacetoacetate (FAA) hydrolase
234	 58.53	0	255663..256940	+	425	161618225	-	BCAN_A0247	-	mandelate racemase/muconate lactonizing protein
235	 48.01	-2	257339..257890	-	183	161618226	-	BCAN_A0248	-	hypothetical protein
236	 46.38	-2	258719..258856	-	45	161618227	-	BCAN_A0249	-	hypothetical protein
237	 59.72	0	259163..259378	-	71	161618228	-	BCAN_A0251	-	zinc-binding protein
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.