IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1778	 61.31	0	1778818..1779246	-	142	161619769	rplU	BCAN_A1888	-	50S ribosomal protein L21
1779	 49.72	-1	1779776..1780654	+	292	161619770	-	BCAN_A1890	-	transposase
1780	 52.74	-1	1780871..1782823	+	650	161619771	-	BCAN_A1891	-	hypothetical protein
1781	 51.85	-1	1782820..1783494	+	224	161619772	-	BCAN_A1892	-	hypothetical protein
1782	 48.25	-2	1783907..1784020	+	37	161619773	-	BCAN_A1893	-	hypothetical protein
1783	 48.03	-2	1784053..1784739	-	228	161619774	-	BCAN_A1894	-	transposase
1784	 50.35	-1	1784850..1786289	-	479	161619775	-	BCAN_A1895	-	hypothetical protein
1785	 45.65	-2	1786252..1786389	-	45	161619776	-	BCAN_A1896	-	hypothetical protein
1786	 50.37	-1	1786465..1787139	-	224	161619777	-	BCAN_A1897	-	hypothetical protein
1787	 54.76	0	1787457..1787624	+	55	161619778	-	BCAN_A1898	-	hypothetical protein
1788	 45.10	-2	1788012..1788164	+	50	161619779	-	BCAN_A1901	-	hypothetical protein
1789	 59.05	0	1794277..1796232	+	651	161619780	-	BCAN_A1906	-	peptidase M23B
1790	 59.17	0	1796300..1797526	-	408	161619781	-	BCAN_A1907	-	ATP synthase subunits region ORF 5
1791	 58.82	0	1798199..1800823	-	874	161619782	clpB	BCAN_A1908	-	chaperone clpB
1792	 62.85	+1	1801022..1801780	-	252	161619783	-	BCAN_A1909	-	hypothetical protein
1793	 50.55	-1	1801761..1802033	-	90	161619784	-	BCAN_A1910	-	hypothetical protein
1794	 49.66	-1	1802095..1802241	+	48	161619785	-	BCAN_A1911	-	hypothetical protein
1795	 57.88	0	1802225..1803112	-	295	161619786	-	BCAN_A1912	-	HemK family methyltransferase
1796	 60.19	0	1803109..1804188	-	359	161619787	prfA	BCAN_A1913	-	peptide chain release factor 1
1797	 60.46	0	1804385..1806655	-	756	161619788	ptsI	BCAN_A1914	-	phosphoenolpyruvate-protein phosphotransferase
1798	 59.04	0	1806983..1808254	-	423	161619789	-	BCAN_A1915	-	aspartate kinase
1799	 59.84	0	1808472..1809218	+	248	161619790	ubiG	BCAN_A1916	-	3-demethylubiquinone-9 3-methyltransferase
1800	 59.17	0	1809224..1810117	-	297	161619791	-	BCAN_A1917	-	hypothetical protein
1801	 56.34	0	1810145..1810570	-	141	161619792	-	BCAN_A1918	-	hypothetical protein
1802	 60.00	0	1810576..1811430	-	284	161619793	-	BCAN_A1919	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1803	 56.93	0	1811441..1811707	-	88	161619794	grxC	BCAN_A1920	-	glutaredoxin 3
1804	 45.53	-2	1811691..1811813	+	40	161619795	-	BCAN_A1921	-	hypothetical protein
1805	 62.10	+1	1811791..1812579	-	262	161619796	gntX	BCAN_A1922	-	protein gntX
1806	 62.53	+1	1812762..1813655	+	297	161619797	bioC	BCAN_A1923	-	biotin synthesis protein BioC
1807	 50.37	-1	1813721..1813855	-	44	161619798	-	BCAN_A1924	-	hypothetical protein
1808	 60.05	0	1813794..1815032	+	412	161619799	-	BCAN_A1925	-	major facilitator transporter
1809	 55.83	0	1815058..1815537	-	159	161619800	-	BCAN_A1926	-	hypothetical protein
1810	 61.90	+1	1815953..1817524	-	523	161619801	-	BCAN_A1927	-	HemY domain-containing protein
1811	 62.09	+1	1817537..1818913	-	458	161619802	-	BCAN_A1928	-	hypothetical protein
1812	 58.76	0	1818996..1819703	-	235	161619803	-	BCAN_A1929	-	uroporphyrinogen-III synthase
1813	 62.43	+1	1819727..1820671	-	314	161619804	hemC	BCAN_A1930	-	porphobilinogen deaminase
1814	 63.61	+1	1820790..1821869	+	359	161619805	-	BCAN_A1931	-	O-sialoglycoprotein endopeptidase
1815	 62.39	+1	1821866..1822846	+	326	161619806	gpsA	BCAN_A1932	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
1816	 60.48	0	1822848..1823138	+	96	161619807	-	BCAN_A1933	-	YciI-like protein
1817	 58.04	0	1823151..1823579	+	142	161619808	-	BCAN_A1934	-	hypothetical protein
1818	 59.01	0	1823531..1824235	+	234	161619809	prmA	BCAN_A1935	-	ribosomal protein L11 methyltransferase
1819	 61.42	+1	1824281..1825138	-	285	161619810	-	BCAN_A1936	-	hypothetical protein
1820	 62.05	+1	1825254..1826747	+	497	161619811	-	BCAN_A1937	-	GntR family transcriptional regulator
1821	 61.25	0	1826809..1829373	-	854	161619812	ftsK	BCAN_A1938	-	DNA translocase ftsK
1822	 59.14	0	1829583..1830884	-	433	161619813	amt	BCAN_A1939	-	ammonium transporter
1823	 53.46	0	1830858..1831016	+	52	161619814	-	BCAN_A1940	-	hypothetical protein
1824	 59.33	0	1831107..1832060	-	317	161619815	tesB	BCAN_A1941	-	acyl-CoA thioesterase II
1825	 62.65	+1	1832229..1833473	+	414	161619816	-	BCAN_A1942	-	2-octaprenyl-6-methoxyphenyl hydroxylase
1826	 55.91	0	1833559..1833930	-	123	161619817	-	BCAN_A1943	-	glyoxalase/bleomycin resistance protein/dioxygenase
1827	 56.92	0	1834177..1834956	-	259	161619818	-	BCAN_A1944	-	succinate dehydrogenase iron-sulfur subunit
1828	 61.73	+1	1834972..1836813	-	613	161619819	sdhA	BCAN_A1945	-	succinate dehydrogenase flavoprotein subunit
1829	 54.29	0	1836821..1837216	-	131	161619820	sdhD	BCAN_A1946	-	succinate dehydrogenase, hydrophobic membrane anchor protein
1830	 59.40	0	1837230..1837628	-	132	161619821	sdhC	BCAN_A1947	-	succinate dehydrogenase, cytochrome b556 subunit
1831	 53.85	0	1837670..1837864	+	64	161619822	-	BCAN_A1948	-	hypothetical protein
1832	 56.86	0	1837973..1838431	-	152	161619823	-	BCAN_A1949	-	hypothetical protein
1833	 60.43	0	1838688..1840097	-	469	161619824	leuC	BCAN_A1950	-	isopropylmalate isomerase large subunit
1834	 58.45	0	1840308..1840745	-	145	161619825	rplS	BCAN_A1951	-	50S ribosomal protein L19
1835	 56.35	0	1841037..1842500	+	487	161619826	-	BCAN_A1952	-	hypothetical protein
1836	 60.32	0	1842653..1842904	-	83	161619827	-	BCAN_A1953	-	hypothetical protein
1837	 59.12	0	1842901..1843311	-	136	161619828	-	BCAN_A1954	-	hypothetical protein
1838	 59.23	0	1843304..1843666	-	120	161619829	-	BCAN_A1955	-	hypothetical protein
1839	 55.86	0	1843663..1843986	-	107	161619830	-	BCAN_A1956	-	NIPSNAP family protein
1840	 59.01	0	1844057..1844722	+	221	161619831	-	BCAN_A1957	-	ArsR family transcriptional regulator
1841	 61.36	+1	1844857..1845591	-	244	161619832	trmD	BCAN_A1958	-	tRNA (guanine-N(1)-)-methyltransferase
1842	 58.07	0	1845588..1846157	-	189	161619833	rimM	BCAN_A1959	-	16S rRNA-processing protein
1843	 62.76	+1	1846381..1847328	+	315	161619834	xerC	BCAN_A1960	-	site-specific tyrosine recombinase XerC
1844	 56.49	0	1847382..1848383	+	333	161619835	-	BCAN_A1961	-	GumN family protein
1845	 58.26	0	1848587..1849990	-	467	161619836	lpdA	BCAN_A1962	-	dihydrolipoamide dehydrogenase
1846	 53.59	0	1850159..1850701	-	180	161619837	-	BCAN_A1963	-	hypothetical protein
1847	 55.56	0	1850772..1851410	-	212	161619838	-	BCAN_A1964	-	lysine exporter protein LysE/YggA
1848	 60.14	0	1851452..1851865	-	137	161619839	-	BCAN_A1965	-	hypothetical protein
1849	 61.53	+1	1851875..1853101	-	408	161619840	sucB	BCAN_A1966	-	dihydrolipoamide acetyltransferase
1850	 59.37	0	1853163..1856177	-	1004	161619841	sucA	BCAN_A1967	-	alpha-ketoglutarate decarboxylase
1851	 56.67	0	1856314..1856463	+	49	161619842	-	BCAN_A1968	-	hypothetical protein
1852	 60.69	0	1856453..1857355	-	300	161619843	-	BCAN_A1969	-	succinyl-CoA synthetase subunit alpha
1853	 57.56	0	1857359..1858555	-	398	161619844	-	BCAN_A1970	-	succinyl-CoA synthetase subunit beta
1854	 61.68	+1	1858662..1859624	-	320	161619845	mdh	BCAN_A1971	-	malate dehydrogenase
1855	 51.85	-1	1859744..1859986	-	80	161619846	-	BCAN_A1972	-	hypothetical protein
1856	 57.73	0	1860063..1861226	-	387	161619847	-	BCAN_A1973	-	AFG1-like ATPase
1857	 63.48	+1	1861346..1861879	-	177	161619848	-	BCAN_A1974	-	hypothetical protein
1858	 50.49	-1	1862009..1862212	-	67	161619849	-	BCAN_A1975	-	hypothetical protein
1859	 63.16	+1	1862243..1863154	+	303	161619850	dapF	BCAN_A1976	-	diaminopimelate epimerase
1860	 60.05	0	1863154..1864437	+	427	161619851	-	BCAN_A1977	-	MiaB-like tRNA modifying enzyme
1861	 60.66	0	1864459..1865856	+	465	161619852	ftsY	BCAN_A1978	-	signal recognition particle-docking protein FtsY
1862	 56.11	0	1865856..1866518	+	220	161619853	ispZ	BCAN_A1979	-	intracellular septation protein A
1863	 58.24	0	1866542..1867324	+	260	161619854	gloB	BCAN_A1980	-	hydroxyacylglutathione hydrolase
1864	 54.47	0	1867371..1867862	+	163	161619855	-	BCAN_A1981	-	hypothetical protein
1865	 56.21	0	1867927..1868232	-	101	161619856	-	BCAN_A1982	-	hypothetical protein
1866	 59.71	0	1868344..1868760	-	138	161619857	-	BCAN_A1983	-	mutator MutT protein
1867	 59.60	0	1868757..1869548	-	263	161619858	-	BCAN_A1984	-	GCN5-related N-acetyltransferase
1868	 60.95	0	1869606..1870847	-	413	161619859	argJ	BCAN_A1985	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1869	 52.78	-1	1871081..1871224	-	47	161619860	-	BCAN_A1986	-	hypothetical protein
1870	 57.93	0	1871285..1872280	-	331	161619861	surA	BCAN_A1987	-	chaperone surA precursor
1871	 47.62	-2	1872408..1872575	-	55	161619862	-	BCAN_A1988	-	hypothetical protein
1872	 58.62	0	1872619..1875339	+	906	161619863	secA	BCAN_A1989	-	preprotein translocase subunit SecA
1873	 45.39	-2	1875367..1875507	+	46	161619864	-	BCAN_A1990	-	hypothetical protein
1874	 59.05	0	1876116..1877402	+	428	161619865	-	BCAN_A1991	-	hypothetical protein
1875	 55.54	0	1877571..1879205	+	544	161619866	-	BCAN_A1992	-	sulfatase
1876	 46.08	-2	1879559..1879660	+	33	161619867	-	BCAN_A1993	-	hypothetical protein
1877	 59.04	0	1880373..1881356	-	327	161619868	oxyR	BCAN_A1995	-	transcriptional regulator
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.