IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1669	 61.11	0	1671281..1671982	+	233	161619660	-	BCAN_A1772	-	hypothetical protein
1670	 38.89	-2	1672235..1672342	-	35	161619661	-	BCAN_A1773	-	hypothetical protein
1671	 61.03	0	1672385..1672792	+	135	161619662	-	BCAN_A1774	-	hypothetical protein
1672	 59.13	0	1672870..1673559	-	229	161619663	-	BCAN_A1775	-	hypothetical protein
1673	 61.79	+1	1673687..1674691	-	334	161619664	-	BCAN_A1776	-	PIG3 family NAD(P)H quinone oxidoreductase
1674	 56.77	0	1674884..1675075	+	63	161619665	-	BCAN_A1777	-	hypothetical protein
1675	 60.05	0	1675173..1676411	+	412	161619666	-	BCAN_A1778	-	major facilitator transporter
1676	 48.89	-1	1676554..1676733	-	59	161619667	-	BCAN_A1779	-	hypothetical protein
1677	 52.25	-1	1676792..1677013	-	73	161619668	-	BCAN_A1780	-	hypothetical protein
1678	 49.51	-1	1677127..1677330	+	67	161619669	-	BCAN_A1781	-	hypothetical protein
1679	 62.99	+1	1677428..1677916	+	162	161619670	purE	BCAN_A1782	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1680	 59.87	0	1677933..1679021	+	362	161619671	purK	BCAN_A1783	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1681	 57.95	0	1679188..1679382	+	64	161619672	rpmJ	BCAN_A1784	-	50S ribosomal protein L36
1682	 57.10	0	1679420..1680109	+	229	161619673	-	BCAN_A1785	-	TPR repeat-containing protein
1683	 59.29	0	1680361..1681797	-	478	161619674	pyk	BCAN_A1786	-	pyruvate kinase
1684	 53.46	0	1681794..1682255	-	153	161619675	-	BCAN_A1787	-	hypothetical protein
1685	 59.10	0	1682496..1683314	+	272	161619676	-	BCAN_A1788	-	N-formylglutamate amidohydrolase
1686	 51.85	-1	1683311..1683472	+	53	161619677	-	BCAN_A1789	-	hypothetical protein
1687	 49.81	-1	1683487..1683747	+	86	161619678	-	BCAN_A1790	-	hypothetical protein
1688	 59.85	0	1683839..1685656	-	605	161619679	-	BCAN_A1791	-	ABC transporter related
1689	 50.98	-1	1685665..1685868	-	67	161619680	-	BCAN_A1792	-	hypothetical protein
1690	 60.35	0	1685804..1686088	-	94	161619681	-	BCAN_A1793	-	hypothetical protein
1691	 56.01	0	1686222..1686878	-	218	161619682	-	BCAN_A1794	-	thiamine pyrophosphokinase
1692	 55.62	0	1687185..1688189	+	334	161619683	thiB	BCAN_A1796	-	thiamine transporter substrate binding subunit
1693	 60.68	0	1688165..1689817	+	550	161619684	thiP	BCAN_A1797	-	thiamine transporter membrane protein
1694	 60.33	0	1689814..1690539	+	241	161619685	-	BCAN_A1798	-	thiamine ABC transporter, ATP-binding protein
1695	 61.13	0	1690806..1692287	+	493	161619686	-	BCAN_A1799	-	peptidase M48 Ste24p
1696	 57.89	0	1692314..1693042	+	242	161619687	-	BCAN_A1800	-	hypothetical protein
1697	 58.55	0	1693130..1694065	-	311	161619688	-	BCAN_A1801	-	RNA polymerase factor sigma-32
1698	 50.00	-1	1694106..1694309	+	67	161619689	-	BCAN_A1802	-	hypothetical protein
1699	 47.62	-2	1694229..1694438	-	69	161619690	-	BCAN_A1803	-	hypothetical protein
1700	 55.21	0	1694410..1694985	-	191	161619691	-	BCAN_A1804	-	hypothetical protein
1701	 55.75	0	1695503..1695841	-	112	161619692	fdxA	BCAN_A1805	-	ferredoxin-2
1702	 51.71	-1	1695974..1696207	-	77	161619693	-	BCAN_A1806	-	hypothetical protein
1703	 61.94	+1	1696204..1696605	-	133	161619694	-	BCAN_A1807	-	RNA-binding S4 domain-containing protein
1704	 62.95	+1	1696746..1697660	+	304	161619695	-	BCAN_A1808	-	hypothetical protein
1705	 61.94	+1	1700399..1701583	-	394	161619696	-	BCAN_A1810	-	acetyl-CoA acetyltransferase
1706	 52.70	-1	1701507..1701728	+	73	161619697	-	BCAN_A1811	-	hypothetical protein
1707	 62.04	+1	1701760..1702191	+	143	161619698	-	BCAN_A1812	-	hypothetical protein
1708	 54.44	0	1702323..1702502	-	59	161619699	rpmF	BCAN_A1813	-	50S ribosomal protein L32
1709	 56.27	0	1702663..1703460	-	265	161619700	mtgA	BCAN_A1814	-	monofunctional biosynthetic peptidoglycan transglycosylase
1710	 62.84	+1	1703584..1704498	+	304	161619701	-	BCAN_A1815	-	polyprenyl synthetase
1711	 60.17	0	1704506..1705768	-	420	161619702	ispG	BCAN_A1816	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1712	 57.07	0	1705936..1706727	+	263	161619703	-	BCAN_A1817	-	3-hydroxybutyrate dehydrogenase
1713	 58.96	0	1706745..1707938	-	397	161619704	mosC	BCAN_A1818	-	membrane protein mosC
1714	 58.79	0	1708000..1711476	-	1158	161619705	-	BCAN_A1819	-	pyruvate carboxylase
1715	 56.72	0	1711742..1712857	-	371	161619706	livJ	BCAN_A1820	-	Leu/Ile/Val-binding protein precursor
1716	 56.06	0	1713000..1713131	-	43	161619707	-	BCAN_A1821	-	hypothetical protein
1717	 49.28	-1	1713150..1713287	+	45	161619708	-	BCAN_A1822	-	hypothetical protein
1718	 54.75	0	1713478..1714593	-	371	161619709	livJ	BCAN_A1823	-	Leu/Ile/Val-binding protein precursor
1719	 53.91	0	1714745..1715089	-	114	161619710	-	BCAN_A1824	-	hypothetical protein
1720	 58.17	0	1715843..1717183	-	446	161619711	-	BCAN_A1827	-	ABC transporter related
1721	 57.97	0	1717183..1718562	-	459	161619712	-	BCAN_A1828	-	inner-membrane translocator
1722	 57.47	0	1718565..1719488	-	307	161619713	-	BCAN_A1829	-	hypothetical protein
1723	 59.18	0	1719767..1720768	-	333	161619714	-	BCAN_A1830	-	proline racemase
1724	 60.56	0	1720774..1722051	-	425	161619715	-	BCAN_A1831	-	D-amino-acid dehydrogenase
1725	 48.92	-1	1722060..1722245	+	61	161619716	-	BCAN_A1832	-	hypothetical protein
1726	 57.31	0	1723068..1723505	-	145	161619717	slyA	BCAN_A1835	-	transcriptional regulator slyA
1727	 57.84	0	1723848..1724255	-	135	161619718	atpC	BCAN_A1836	-	F0F1 ATP synthase subunit epsilon
1728	 61.62	+1	1724380..1725945	-	521	161619719	atpD	BCAN_A1837	-	F0F1 ATP synthase subunit beta
1729	 57.00	0	1726073..1726951	-	292	161619720	-	BCAN_A1838	-	F0F1 ATP synthase subunit gamma
1730	 59.74	0	1726973..1728502	-	509	161619721	atpA	BCAN_A1839	-	F0F1 ATP synthase subunit alpha
1731	 58.29	0	1728502..1729062	-	186	161619722	atpH	BCAN_A1840	-	F0F1 ATP synthase subunit delta
1732	 58.94	0	1729344..1729757	-	137	161619723	-	BCAN_A1841	-	hypothetical protein
1733	 62.42	+1	1729824..1732058	-	744	161619724	priA	BCAN_A1842	-	primosome assembly protein PriA
1734	 56.73	0	1732168..1732821	+	217	161619725	talC	BCAN_A1843	-	putative translaldolase
1735	 58.93	0	1732965..1733546	-	193	161619726	-	BCAN_A1844	-	hypothetical protein
1736	 59.26	0	1733533..1736166	-	877	161619727	leuS	BCAN_A1845	-	leucyl-tRNA synthetase
1737	 60.79	0	1736289..1736969	+	226	161619728	-	BCAN_A1846	-	hypothetical protein
1738	 57.06	0	1736982..1737512	-	176	161619729	-	BCAN_A1847	-	hypothetical protein
1739	 54.17	0	1737583..1737870	-	95	161619730	-	BCAN_A1848	-	Usg family protein
1740	 59.25	0	1738211..1740166	+	651	161619731	acsA	BCAN_A1849	-	acetyl-CoA synthetase
1741	 60.73	0	1740322..1740540	-	72	161619732	-	BCAN_A1850	-	hypothetical protein
1742	 60.22	0	1740672..1741649	+	325	161619733	htpX	BCAN_A1851	-	heat shock protein HtpX
1743	 62.73	+1	1741665..1743062	+	465	161619734	-	BCAN_A1852	-	Fmu (Sun) domain-containing protein
1744	 61.56	+1	1743183..1744925	+	580	161619735	-	BCAN_A1853	-	hypothetical protein
1745	 61.47	+1	1745032..1746648	+	538	161619736	purH	BCAN_A1854	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1746	 58.63	0	1746698..1748065	-	455	161619737	-	BCAN_A1855	-	major facilitator transporter
1747	 41.83	-2	1748155..1748307	+	50	161619738	-	BCAN_A1856	-	hypothetical protein
1748	 59.40	0	1748285..1753087	-	1600	161619739	-	BCAN_A1857	-	NAD-glutamate dehydrogenase
1749	 58.26	0	1753352..1753993	-	213	161619740	-	BCAN_A1858	-	hypothetical protein
1750	 58.71	0	1754006..1754809	-	267	161619741	-	BCAN_A1859	-	hypothetical protein
1751	 55.77	0	1754890..1755513	-	207	161619742	-	BCAN_A1860	-	LemA family protein
1752	 52.30	-1	1755510..1755683	-	57	161619743	-	BCAN_A1861	-	hypothetical protein
1753	 62.72	+1	1755783..1756187	-	134	161619744	rpsP	BCAN_A1862	-	30S ribosomal protein S16
1754	 58.41	0	1756254..1756568	-	104	161619745	-	BCAN_A1863	-	chorismate mutase
1755	 60.31	0	1756574..1758145	-	523	161619746	ffh	BCAN_A1864	-	signal recognition particle protein
1756	 59.90	0	1758580..1759407	+	275	161619747	-	BCAN_A1865	-	lytic murein transglycosylase
1757	 55.30	0	1759471..1760112	-	213	161619748	-	BCAN_A1866	-	carbonic anhydrase
1758	 61.87	+1	1760286..1761182	-	298	161619749	-	BCAN_A1867	-	pyridoxamine kinase
1759	 64.24	+1	1761184..1761471	-	95	161619750	-	BCAN_A1868	-	hypothetical protein
1760	 60.32	0	1761844..1763340	-	498	161619751	mmsA	BCAN_A1869	-	methylmalonate-semialdehyde dehydrogenase
1761	 61.81	+1	1763447..1764373	+	308	161619752	-	BCAN_A1870	-	LysR family transcriptional regulator
1762	 60.16	0	1764584..1765228	-	214	161619753	-	BCAN_A1871	-	hypothetical protein
1763	 58.78	0	1765222..1765614	+	130	161619754	-	BCAN_A1872	-	hypothetical protein
1764	 58.82	0	1765296..1765550	-	84	161619755	-	BCAN_A1873	-	hypothetical protein
1765	 60.15	0	1765666..1766202	-	178	161619756	nudH	BCAN_A1874	-	dinucleoside polyphosphate hydrolase
1766	 58.84	0	1766420..1767748	-	442	161619757	-	BCAN_A1875	-	carboxyl-terminal protease
1767	 59.41	0	1767738..1769087	-	449	161619758	-	BCAN_A1876	-	leucine zipper protein 1
1768	 57.22	0	1769200..1770099	-	299	161619759	-	BCAN_A1877	-	hypothetical protein
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.