IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1613	 59.20	0	1613731..1615686	-	651	161619604	macB	BCAN_A1711	-	macrolide export ATP-binding/permease protein macB
1614	 59.01	0	1615686..1616912	-	408	161619605	-	BCAN_A1712	-	RND family efflux transporter MFP subunit
1615	 61.39	+1	1617147..1617620	-	157	161619606	dut	BCAN_A1713	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1616	 56.48	0	1617843..1618313	-	156	161619607	-	BCAN_A1714	-	AsnC family transcriptional regulator
1617	 53.70	0	1618459..1618674	+	71	161619608	-	BCAN_A1715	-	hypothetical protein
1618	 60.30	0	1618714..1619577	+	287	161619609	-	BCAN_A1716	-	glutamine amidotransferase class-II
1619	 59.35	0	1619604..1620587	-	327	161619610	-	BCAN_A1717	-	rubrerythrin
1620	 59.87	0	1620782..1622134	+	450	161619611	-	BCAN_A1718	-	hypothetical protein
1621	 60.73	0	1622344..1623741	-	465	161619612	-	BCAN_A1719	-	hypothetical protein
1622	 54.05	0	1623939..1624049	-	36	161619613	-	BCAN_A1720	-	hypothetical protein
1623	 60.85	0	1624054..1625343	-	429	161619614	purA	BCAN_A1721	-	adenylosuccinate synthetase
1624	 56.86	0	1625661..1626170	-	169	161619615	-	BCAN_A1722	-	hypothetical protein
1625	 57.49	0	1626175..1627776	-	533	161619616	serA	BCAN_A1723	-	D-3-phosphoglycerate dehydrogenase
1626	 52.63	-1	1627748..1627918	-	56	161619617	-	BCAN_A1724	-	hypothetical protein
1627	 58.67	0	1627930..1629105	-	391	161619618	-	BCAN_A1725	-	phosphoserine aminotransferase
1628	 56.12	0	1630392..1631216	-	274	161619619	-	BCAN_A1729	-	porin opacity type
1629	 57.90	0	1631401..1632780	-	459	161619620	glmM	BCAN_A1730	-	phosphoglucosamine mutase
1630	 58.29	0	1633061..1634995	-	644	161619621	ftsH	BCAN_A1731	-	ATP-dependent metalloprotease FtsH
1631	 61.10	0	1635131..1636477	-	448	161619622	tilS	BCAN_A1732	-	tRNA(Ile)-lysidine synthase
1632	 59.92	0	1636493..1637959	-	488	161619623	ygbF	BCAN_A1733	-	tol-pal system protein YbgF
1633	 62.52	+1	1638356..1638862	-	168	161619624	pal	BCAN_A1734	-	peptidoglycan-associated lipoprotein
1634	 49.44	-1	1638911..1639090	-	59	161619625	-	BCAN_A1735	-	hypothetical protein
1635	 59.31	0	1639150..1640481	-	443	161619626	tolB	BCAN_A1736	-	translocation protein TolB
1636	 60.32	0	1640537..1641607	-	356	161619627	-	BCAN_A1737	-	TolA protein
1637	 55.19	0	1641615..1642067	-	150	161619628	tolR	BCAN_A1738	-	protein TolR
1638	 59.07	0	1642114..1642824	-	236	161619629	tolQ	BCAN_A1739	-	protein TolQ
1639	 58.16	0	1643199..1643480	-	93	161619630	-	BCAN_A1740	-	thioesterase superfamily protein
1640	 61.67	+1	1643628..1644668	-	346	161619631	ruvB	BCAN_A1741	-	Holliday junction DNA helicase B
1641	 61.33	+1	1644709..1645326	-	205	161619632	ruvA	BCAN_A1742	-	Holliday junction DNA helicase motor protein
1642	 59.77	0	1645331..1645852	-	173	161619633	ruvC	BCAN_A1743	-	Holliday junction resolvase
1643	 60.95	0	1645954..1646460	-	168	161619634	-	BCAN_A1744	-	hypothetical protein
1644	 58.71	0	1646948..1648129	-	393	161619635	-	BCAN_A1745	-	hypothetical protein
1645	 61.71	+1	1648374..1649039	+	221	161619636	thiE	BCAN_A1746	-	thiamine-phosphate pyrophosphorylase
1646	 61.89	+1	1649040..1650128	+	362	161619637	-	BCAN_A1747	-	Sel1 domain-containing protein
1647	 56.51	0	1650393..1650953	+	186	161619638	efp	BCAN_A1748	-	elongation factor P
1648	 62.01	+1	1651139..1651933	+	264	161619639	-	BCAN_A1749	-	inositol-phosphate phosphatase
1649	 42.34	-2	1651938..1652048	+	36	161619640	-	BCAN_A1750	-	hypothetical protein
1650	 60.76	0	1652188..1653237	+	349	161619641	-	BCAN_A1751	-	hypothetical protein
1651	 59.50	0	1653244..1654275	+	343	161619642	-	BCAN_A1752	-	hypothetical protein
1652	 60.61	0	1654309..1656108	-	599	161619643	-	BCAN_A1753	-	ABC transporter, ATP-binding/permease protein
1653	 59.01	0	1656424..1656645	+	73	161619644	rpmE	BCAN_A1754	-	50S ribosomal protein L31
1654	 57.43	0	1656873..1657619	-	248	161619645	-	BCAN_A1755	-	hypothetical protein
1655	 62.67	+1	1658695..1659270	+	191	161619646	bioY	BCAN_A1757	-	protein bioY
1656	 59.44	0	1659281..1659709	+	142	161619647	-	BCAN_A1758	-	hypothetical protein
1657	 56.18	0	1659722..1660465	-	247	161619648	-	BCAN_A1759	-	integral membrane protein TerC
1658	 58.91	0	1660676..1661500	-	274	161619649	-	BCAN_A1760	-	hypothetical protein
1659	 62.14	+1	1661609..1662205	-	198	161619650	-	BCAN_A1761	-	5,10-methenyltetrahydrofolate synthetase
1660	 59.02	0	1662593..1662958	-	121	161619651	-	BCAN_A1763	-	hypothetical protein
1661	 60.44	0	1662968..1663240	-	90	161619652	-	BCAN_A1764	-	hypothetical protein
1662	 60.04	0	1663669..1665660	+	663	161619653	tkt	BCAN_A1765	-	transketolase
1663	 58.53	0	1665801..1666808	+	335	161619654	gap	BCAN_A1766	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1664	 60.20	0	1666876..1668066	+	396	161619655	pgk	BCAN_A1767	-	phosphoglycerate kinase
1665	 56.97	0	1668357..1668521	-	54	161619656	-	BCAN_A1768	-	hypothetical protein
1666	 60.44	0	1668795..1670705	+	636	161619657	-	BCAN_A1769	-	AMP-dependent synthetase and ligase
1667	 58.25	0	1670635..1670943	+	102	161619658	-	BCAN_A1770	-	short-chain dehydrogenase/reductase SDR
1668	 54.30	0	1671089..1671274	+	61	161619659	-	BCAN_A1771	-	hypothetical protein
1669	 61.11	0	1671281..1671982	+	233	161619660	-	BCAN_A1772	-	hypothetical protein
1670	 38.89	-2	1672235..1672342	-	35	161619661	-	BCAN_A1773	-	hypothetical protein
1671	 61.03	0	1672385..1672792	+	135	161619662	-	BCAN_A1774	-	hypothetical protein
1672	 59.13	0	1672870..1673559	-	229	161619663	-	BCAN_A1775	-	hypothetical protein
1673	 61.79	+1	1673687..1674691	-	334	161619664	-	BCAN_A1776	-	PIG3 family NAD(P)H quinone oxidoreductase
1674	 56.77	0	1674884..1675075	+	63	161619665	-	BCAN_A1777	-	hypothetical protein
1675	 60.05	0	1675173..1676411	+	412	161619666	-	BCAN_A1778	-	major facilitator transporter
1676	 48.89	-1	1676554..1676733	-	59	161619667	-	BCAN_A1779	-	hypothetical protein
1677	 52.25	-1	1676792..1677013	-	73	161619668	-	BCAN_A1780	-	hypothetical protein
1678	 49.51	-1	1677127..1677330	+	67	161619669	-	BCAN_A1781	-	hypothetical protein
1679	 62.99	+1	1677428..1677916	+	162	161619670	purE	BCAN_A1782	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1680	 59.87	0	1677933..1679021	+	362	161619671	purK	BCAN_A1783	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1681	 57.95	0	1679188..1679382	+	64	161619672	rpmJ	BCAN_A1784	-	50S ribosomal protein L36
1682	 57.10	0	1679420..1680109	+	229	161619673	-	BCAN_A1785	-	TPR repeat-containing protein
1683	 59.29	0	1680361..1681797	-	478	161619674	pyk	BCAN_A1786	-	pyruvate kinase
1684	 53.46	0	1681794..1682255	-	153	161619675	-	BCAN_A1787	-	hypothetical protein
1685	 59.10	0	1682496..1683314	+	272	161619676	-	BCAN_A1788	-	N-formylglutamate amidohydrolase
1686	 51.85	-1	1683311..1683472	+	53	161619677	-	BCAN_A1789	-	hypothetical protein
1687	 49.81	-1	1683487..1683747	+	86	161619678	-	BCAN_A1790	-	hypothetical protein
1688	 59.85	0	1683839..1685656	-	605	161619679	-	BCAN_A1791	-	ABC transporter related
1689	 50.98	-1	1685665..1685868	-	67	161619680	-	BCAN_A1792	-	hypothetical protein
1690	 60.35	0	1685804..1686088	-	94	161619681	-	BCAN_A1793	-	hypothetical protein
1691	 56.01	0	1686222..1686878	-	218	161619682	-	BCAN_A1794	-	thiamine pyrophosphokinase
1692	 55.62	0	1687185..1688189	+	334	161619683	thiB	BCAN_A1796	-	thiamine transporter substrate binding subunit
1693	 60.68	0	1688165..1689817	+	550	161619684	thiP	BCAN_A1797	-	thiamine transporter membrane protein
1694	 60.33	0	1689814..1690539	+	241	161619685	-	BCAN_A1798	-	thiamine ABC transporter, ATP-binding protein
1695	 61.13	0	1690806..1692287	+	493	161619686	-	BCAN_A1799	-	peptidase M48 Ste24p
1696	 57.89	0	1692314..1693042	+	242	161619687	-	BCAN_A1800	-	hypothetical protein
1697	 58.55	0	1693130..1694065	-	311	161619688	-	BCAN_A1801	-	RNA polymerase factor sigma-32
1698	 50.00	-1	1694106..1694309	+	67	161619689	-	BCAN_A1802	-	hypothetical protein
1699	 47.62	-2	1694229..1694438	-	69	161619690	-	BCAN_A1803	-	hypothetical protein
1700	 55.21	0	1694410..1694985	-	191	161619691	-	BCAN_A1804	-	hypothetical protein
1701	 55.75	0	1695503..1695841	-	112	161619692	fdxA	BCAN_A1805	-	ferredoxin-2
1702	 51.71	-1	1695974..1696207	-	77	161619693	-	BCAN_A1806	-	hypothetical protein
1703	 61.94	+1	1696204..1696605	-	133	161619694	-	BCAN_A1807	-	RNA-binding S4 domain-containing protein
1704	 62.95	+1	1696746..1697660	+	304	161619695	-	BCAN_A1808	-	hypothetical protein
1705	 61.94	+1	1700399..1701583	-	394	161619696	-	BCAN_A1810	-	acetyl-CoA acetyltransferase
1706	 52.70	-1	1701507..1701728	+	73	161619697	-	BCAN_A1811	-	hypothetical protein
1707	 62.04	+1	1701760..1702191	+	143	161619698	-	BCAN_A1812	-	hypothetical protein
1708	 54.44	0	1702323..1702502	-	59	161619699	rpmF	BCAN_A1813	-	50S ribosomal protein L32
1709	 56.27	0	1702663..1703460	-	265	161619700	mtgA	BCAN_A1814	-	monofunctional biosynthetic peptidoglycan transglycosylase
1710	 62.84	+1	1703584..1704498	+	304	161619701	-	BCAN_A1815	-	polyprenyl synthetase
1711	 60.17	0	1704506..1705768	-	420	161619702	ispG	BCAN_A1816	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1712	 57.07	0	1705936..1706727	+	263	161619703	-	BCAN_A1817	-	3-hydroxybutyrate dehydrogenase
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.